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EnzymeEntry.addCofactor(Object) instead
EnzymeEntrys into BioPAX
catalysys objects and viceversa.EnzymeEntry may catalyze more than one
reaction.Book instance.
CC line.DELETION events and returns the source node of this event.
IntEnzUtilities.cleanLinks(String) and IntEnzUtilities.firstLetterToUppercase(String)
RheaCompoundDbReader.
UnitOfWork.register(uk.ac.ebi.intenz.webapp.dtos.EnzymeDTO).
EnzymeCommissionNumber.
LineWrapper implementation which will be chosen according to the needs of the text to be
wrapped.
JAXBElement<EnzymeNameType>}
JAXBElement<BookType>}
BookType
JAXBElement<CofactorType>}
Cofactors
CofactorType
JAXBElement<ViewableType>}
Comments
JAXBElement<InactiveStatusType>}
JAXBElement<XmlContentType>}
JAXBElement<String>}
JAXBElement<EcClassType>}
EcClassType
JAXBElement<EcSubclassType>}
EcSubclassType
JAXBElement<EcSubsubclassType>}
EcSubsubclassType
Editorial
EntryType
JAXBElement<EnzymeType>}
EnzymeNameType
EnzymeType
InactiveStatusType
Intenz
JAXBElement<JournalType>}
JournalType
JAXBElement<LinkType>}
Links
LinkType
JAXBElement<XmlContentType>}
JAXBElement<PatentType>}
PatentType
JAXBElement<ReactionType>}
Reactions
ReactionType
References
JAXBElement<EnzymeNameType>}
Synonyms
JAXBElement<EnzymeNameType>}
JAXBElement<InactiveStatusType>}
ViewableType
XmlContentType
SQLException object.
ec parameter.EnzymeComment instance.
SPTRCrossReference interface.EnzymeCrossReference instance to the given database.
Map since the number of properties needs to
be dynamically adjustable.INTENZ.
EnzymeEntry interface.Status instead.EnzymeSubclass instance.
EnzymeSubSubclass instance.
View instead.Factory,
which allows to create EnzymeCrossReference instances only.FutureEvent objects are equal.
HistoryEvent objects are equal.
equals() method.
equals() method.
equals() method.
equals() method.
Event instead.HistoryEventMapper instead.http://www.sitemaps.org)
Journal instance by using the PubMed ID of the reference.
find() method and handles empty results
and SQL exceptions.
find() method and handles empty results
and SQL exceptions.
find() method and handles empty results
and SQL exceptions.
find() method and handles empty results
and SQL exceptions.
find() method and handles empty results
and SQL exceptions.
q (query) parameter.CC lines according to the format described in the class description.
LineWrapper
implementations.
line type as
described in the class description.
Cofactor.getCompound().getName() or Cofactor.toString() instead
EnzymeEntry.getComments(String) instead
view value matches the
parameter's view value.
EnzymeName instance representing an enzyme's common (recommended) name.
EnzymeClass,
EnzymeSubClass or EnzymeSubSubClass objects
from which to retrieve names and descriptions.
databaseCode.
EnzymeName object using a
EnzymeNameDTO object stored in the enzyme DTO.
EnzymeEntry.getLinks(String) instead
EnzymeEntry.getReactions(View) or EnzymeEntry.getReactions(String) instead.
EnzymeName instance representing an enzyme's synonym.
EnzymeEntry.getSynonyms(String) or EnzymeEntry.getSynonyms(View) instead.
EnzymeName instance representing an enzyme's systematic name.
ArrayList of GhostEnzymeDTO instances.GoLinkImporter here.HistoryGraph instance.
id2ec.FUTURE_EVENTS table.
FUTURE_EVENTS table.
FUTURE_EVENTS table.
FUTURE_EVENTS table.
78 characters.
SUBSUBCLASSES table.
SpecialCharacters instance and establishes a connection.true if this node's event is a DELETION event.
EnzymeCommissionNumber.PRELIMINARY_PREFIX).
true if the given node is the successor of this node.
true if this node's event is a TRANSFER event.
true if this link belongs to the XREFS table.
Map since the number of properties needs to
be dynamically adjustable.enzyme.dat file.LineWrapper implementation.2-Carb- prefixed word.
IntEnzUtilities.linkEcNumbers(String) instead and - if needed -
IntEnzUtilities.firstLetterToUppercase(String)
XmlExporter
class.
Site map XML file (sitemap.xml) to be used in
Google sitemaps
to make every IntEnz entry available to Google indexing.
Patent instance.
SpecialCharacters instance and establishes a connection.
EnzymeDTO instance.
EnzymeEntry.removeCofactor(Object) instead
RuleGroup.applyRules(String).
TagRules.applyRules(String) only.
RuleGroup implementations.q (query) parameter.Map since the number of properties needs to
be dynamically adjustable.EnzymeLink.
IntEnz format.
XCharsASCIITranslator.toXCharsFormat(String, boolean) method for each item.
enzyme.dat flat file.ENZYMES.
FUTURE_EVENTS table.
FUTURE_EVENTS table.
FUTURE_EVENTS table.
EnzymeNameQualifierConstant instance of the given qualifier string.
EnzymeNameTypeConstant instance of the given type string.
EnzymeClass instance.
EnzymeCommissionNumber instance defined by the given integer.
EnzymeCommissionNumber instance defined by the given integers.
EnzymeCommissionNumber instance defined by the given integers.
EnzymeCommissionNumber instance defined by the given integers.
EnzymeCommissionNumber instance defined by the given string.
EnzymeLink instance.
EnzymeLink instance.
ENZYME data into the IntEnz format and vice versa.
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