uk.ac.ebi.intenz.tools.sib.translator
Class SIBEnzymeLogger

java.lang.Object
  uk.ac.ebi.intenz.tools.sib.translator.SIBEnzymeLogger

public class SIBEnzymeLogger
extends Object

This class is used to log translation activities during the parse process.

Version:

1.0 - 08-Apr-2003

Author:

Michael Darsow

Field Summary

static int	COMMENTS
static int	COMMON_NAMES
static int	OTHER_NAMES
static int	REACTIONS

Constructor Summary

SIBEnzymeLogger(String dir, int type, boolean enzymeLogFormat)
Enables a logger which stores all results in one file.

SIBEnzymeLogger(String dir, String ec)
Initialises the log file of the given EC.

Method Summary

void	add(String before, String after, String ec) Adds information to the log file.
void	addOtherNameLog(String nameNotMatching, String set, String ec)
void	close() Must be called to close the log file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

COMMON_NAMES

public static final int COMMON_NAMES

See Also:

Constant Field Values

REACTIONS

public static final int REACTIONS

See Also:

Constant Field Values

OTHER_NAMES

public static final int OTHER_NAMES

See Also:

Constant Field Values

COMMENTS

public static final int COMMENTS

See Also:

Constant Field Values

Constructor Detail

SIBEnzymeLogger

public SIBEnzymeLogger(String dir,
                       String ec)

Initialises the log file of the given EC.

Parameters:

ec - Used for the file name.

SIBEnzymeLogger

public SIBEnzymeLogger(String dir,
                       int type,
                       boolean enzymeLogFormat)

Enables a logger which stores all results in one file.

Parameters:

dir - Directory of the log file.

type - Type of comparison (see static fields).

enzymeLogFormat -

Method Detail

add

public void add(String before,
                String after,
                String ec)

Adds information to the log file.

Parameters:

before - Not translated string.

after - Translated string.

ec - The EC number.

addOtherNameLog

public void addOtherNameLog(String nameNotMatching,
                            String set,
                            String ec)

close

public void close()

Must be called to close the log file.