IntEnz 4.2.4 API

Packages

uk.ac.ebi.intenz.biopax.level2
uk.ac.ebi.intenz.domain	Contains the IntEnz domain packages and classes.
uk.ac.ebi.intenz.domain.constants	The most commonly used constants are implemented as typesafe enums.
uk.ac.ebi.intenz.domain.enzyme	The core enzyme information is held in these classes.
uk.ac.ebi.intenz.domain.exceptions
uk.ac.ebi.intenz.domain.history	The classification classes will be used to represent the EC hierarchy and the enzyme history.
uk.ac.ebi.intenz.domain.reference	Classes for storing publication data.
uk.ac.ebi.intenz.domain.stats
uk.ac.ebi.intenz.mapper	O/R mapping layer classes.
uk.ac.ebi.intenz.stats
uk.ac.ebi.intenz.stats.db
uk.ac.ebi.intenz.tools.export
uk.ac.ebi.intenz.tools.importer
uk.ac.ebi.intenz.tools.release
uk.ac.ebi.intenz.tools.release.helper
uk.ac.ebi.intenz.tools.sib	This package contains a class which allows to execute the flat file writer from the command line. In addition a comparator is available which can be used to check a generated flat file with a given one.
uk.ac.ebi.intenz.tools.sib.comparator
uk.ac.ebi.intenz.tools.sib.exceptions
uk.ac.ebi.intenz.tools.sib.helper
uk.ac.ebi.intenz.tools.sib.sptr_enzyme	This package contains SPTR classes which implement SPTR interfaces.
uk.ac.ebi.intenz.tools.sib.translator	These classes are used to transfer ENZYME data into the IntEnz format and vice versa.
uk.ac.ebi.intenz.tools.sib.translator.rules	This package consists of the rule classes used by the translator.
uk.ac.ebi.intenz.tools.sib.validator
uk.ac.ebi.intenz.tools.sib.writer	This package contains classes for writing the enzyme.dat flat file.
uk.ac.ebi.intenz.webapp	This package contains packages and classes used for the public read-only IntEnz web application.
uk.ac.ebi.intenz.webapp.controller	All front controller related classes are stored here.
uk.ac.ebi.intenz.webapp.controller.common	Contains common commands.
uk.ac.ebi.intenz.webapp.controller.export
uk.ac.ebi.intenz.webapp.controller.helper.dtoinit
uk.ac.ebi.intenz.webapp.controller.helper.forwards
uk.ac.ebi.intenz.webapp.controller.modification
uk.ac.ebi.intenz.webapp.controller.search
uk.ac.ebi.intenz.webapp.dtos
uk.ac.ebi.intenz.webapp.exceptions	All exceptions are located here.
uk.ac.ebi.intenz.webapp.helper
uk.ac.ebi.intenz.webapp.util
uk.ac.ebi.intenz.webapp.utilities
uk.ac.ebi.intenz.xml.jaxb