Package uk.ac.ebi.intenz.tools.sib.writer

This package contains classes for writing the enzyme.dat flat file.

See:
Description

Interface Summary

LineFormatter	This interface provides a method to format lines according to the rules of the enzyme.dat file.
LineWrapper	Defines a method to retrieve the next line wrapping position.

Class Summary

CC_LineFormatter	Handles the special needs regarding the format of the CC line.
DefaultLineFormatter	Provides a default implementation which can be applied to all line types.
EnzymeFlatFileWriter	This utility class provides methods for exporting enzyme data into the ENZYME flat file format.
LineType	Represents an enumeration of all ENZYME line types.
LineWrapperFactory	This class provides a factory method to retrieve the adequate LineWrapper implementation.

Exception Summary

EnzymeFlatFileWriteException

This exception is thrown whenever an error occurs during the creation of the ENZYME flat file.

Package uk.ac.ebi.intenz.tools.sib.writer Description

This package contains classes for writing the enzyme.dat flat file.

The flat file writer is comprised of classes responsible for proper formatting of the individual line types and classes defining rules for line wrapping. Two interfaces are provided which can be implemented to provide additional classes for formatting or wrapping.

The formatting classes take care that the lines will get the expected format in the end. At the moment two classes exist whereas the DefaultLineFormatter defines the format of all line types. The CC line is a special case and handled by the CC_LineFormatter.

Finally the line wrapping classes can be retrieved using the LineWrapperFactory. This factory contains some nested classes which cover different line wrapping scenarios which are usually not connected to any specific line type, hence the distinction of these two components.