uk.ac.ebi.intenz.webapp.dtos
Class EnzymeDTO

java.lang.Object
  org.apache.struts.action.ActionForm
      org.apache.struts.validator.ValidatorForm
          uk.ac.ebi.intenz.webapp.dtos.EnzymeDTO

All Implemented Interfaces:

Serializable

public class EnzymeDTO
extends org.apache.struts.validator.ValidatorForm

This ActionForm stores all enzyme properties in a Map since the number of properties needs to be dynamically adjustable.

The enzyme properties will be stored as follows:

KEY	VALUE TYPE	Description
ec	String	The enzyme's EC number.
commonNames	String[][]	String[][] containing [index]{name, source}. See also EnzymeName.
reactions	String[][]	String[][] containing [index]{textualRepresentation, source}. See also uk.ac.ebi.intenz.domain.enzyme.Reaction.
systematicName	String	The enzyme's systematic name.
synonyms	String[][]	String[][] containing [index]{name, qualifier, source, orderIn}. See also EnzymeName.
cofactors	String[]	String[] of cofactors (Strings containing the 'cofactorValue'). See also Cofactor.
links	String[][]	String[][] containing [index]{source, specificUrl, accession, name}. See also EnzymeLink.
comments	String[][]	String[][] containing [index]{commentText, source}. See also EnzymeComment.
references	String[][]	String[][] containing [index]{pubId, authors, title, year, pubName, firstPage, lastPage, edition, editor, volume, publisher, publisherPlace, pubMedId, medlineId, patentNumber}. See also uk.ac.ebi.intenz.domain.reference.
note	String	A note which might have been added by a curator.
historyLine	String	The enzyme's history line.
status	String	The enzyme's status (code).
source	String	The enzyme's source (code).

Version:

$Revision: 1.3 $ $Date: 2008/03/12 12:29:16 $

Author:

Michael Darsow

See Also:

Serialized Form

Field Summary

Fields inherited from class org.apache.struts.validator.ValidatorForm

page, validatorResults

Fields inherited from class org.apache.struts.action.ActionForm

multipartRequestHandler, servlet

Constructor Summary

EnzymeDTO()

EnzymeDTO(EnzymeDTO enzymeDTO)

Method Summary

List	getAllLinks()
List	getCasLinks()
String	getClassEc()
String	getClassName()
Object	getCofactor(int index)
List<CofactorDTO>	getCofactors()
CommentDTO	getComment(int index)
List	getComments()
EnzymeNameDTO	getCommonName(int index)
List	getCommonNames()
String	getEc()
List	getGoLinks()
String	getHistoryLine()
String	getId()
String	getLatestHistoryAfterId()
String	getLatestHistoryBeforeId()
String	getLatestHistoryEventClass()
String	getLatestHistoryEventGroupId()
String	getLatestHistoryEventId()
String	getLatestHistoryEventNote()
EnzymeLinkDTO	getLink(int index)
List	getLinks()
List	getLinks(String dbCode)
String	getNote()
ReactionDTO	getReactionDto(int index)
List<ReactionDTO>	getReactionDtos()
ReferenceDTO	getReference(int index)
List<ReferenceDTO>	getReferences()
String	getSource()
String	getStatusCode()
String	getStatusText()
String	getSubclassEc()
String	getSubclassName()
String	getSubSubclassEc()
String	getSubSubclassName()
EnzymeNameDTO	getSynonym(int index)
List	getSynonyms()
EnzymeNameDTO	getSystematicName()
String	getTransferredEc()
String	getTransferredToEc()
EnzymeLinkDTO	getUniProtLink(int index)
List	getUniProtLinks()
Integer	getUowId()
String	getXcharsView()
boolean	isActive()
boolean	isPreliminaryEc()
void	reset(org.apache.struts.action.ActionMapping mapping, javax.servlet.http.HttpServletRequest request)
void	setActive(boolean active)
void	setClassEc(String classEc)
void	setClassName(String className)
void	setCofactors(List<CofactorDTO> cofactors)
void	setComments(List comments)
void	setCommonNames(List commonNames)
void	setEc(String ec)
void	setHistoryLine(String historyLine)
void	setId(String id)
void	setLatestHistoryAfterId(String latestHistoryAfterId)
void	setLatestHistoryBeforeId(String latestHistoryBeforeId)
void	setLatestHistoryEventClass(String latestHistoryEventClass)
void	setLatestHistoryEventGroupId(String latestHistoryEventGroupId)
void	setLatestHistoryEventId(String latestHistoryEventId)
void	setLatestHistoryEventNote(String latestHistoryEventNote)
void	setLinks(List links)
void	setNote(String note)
void	setReactionDtos(List<ReactionDTO> reactions)
void	setReferences(List<ReferenceDTO> references)
void	setSource(String source)
void	setStatusCode(String statusCode)
void	setStatusText(String statusText)
void	setSubclassEc(String subclassEc)
void	setSubclassName(String subclassName)
void	setSubSubclassEc(String subSubclassEc)
void	setSubSubclassName(String subSubclassName)
void	setSynonyms(List synonyms)
void	setSystematicName(EnzymeNameDTO systematicName)
void	setTransferredEc(String transferredEc)
void	setTransferredToEc(String transferredToEc)
void	setUniProtLinks(List uniProtLinks)
void	setUowId(Integer uowId)
void	setXcharsView(String xcharsView)
org.apache.struts.action.ActionErrors	validate(org.apache.struts.action.ActionMapping mapping, javax.servlet.http.HttpServletRequest request)

Methods inherited from class org.apache.struts.validator.ValidatorForm

getPage, getResultValueMap, getValidationKey, getValidatorResults, setPage, setValidatorResults

Methods inherited from class org.apache.struts.action.ActionForm

getMultipartRequestHandler, getServlet, getServletWrapper, reset, setMultipartRequestHandler, setServlet, validate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EnzymeDTO

public EnzymeDTO()

EnzymeDTO

public EnzymeDTO(EnzymeDTO enzymeDTO)

Method Detail

getXcharsView

public String getXcharsView()

setXcharsView

public void setXcharsView(String xcharsView)

isActive

public boolean isActive()

setActive

public void setActive(boolean active)

getAllLinks

public List getAllLinks()

getClassEc

public String getClassEc()

setClassEc

public void setClassEc(String classEc)

getClassName

public String getClassName()

setClassName

public void setClassName(String className)

getCofactors

public List<CofactorDTO> getCofactors()

setCofactors

public void setCofactors(List<CofactorDTO> cofactors)

getComments

public List getComments()

setComments

public void setComments(List comments)

getCommonNames

public List getCommonNames()

setCommonNames

public void setCommonNames(List commonNames)

getEc

public String getEc()

setEc

public void setEc(String ec)

isPreliminaryEc

public boolean isPreliminaryEc()

getHistoryLine

public String getHistoryLine()

setHistoryLine

public void setHistoryLine(String historyLine)

getId

public String getId()

setId

public void setId(String id)

getLatestHistoryAfterId

public String getLatestHistoryAfterId()

setLatestHistoryAfterId

public void setLatestHistoryAfterId(String latestHistoryAfterId)

getLatestHistoryBeforeId

public String getLatestHistoryBeforeId()

setLatestHistoryBeforeId

public void setLatestHistoryBeforeId(String latestHistoryBeforeId)

getLatestHistoryEventClass

public String getLatestHistoryEventClass()

setLatestHistoryEventClass

public void setLatestHistoryEventClass(String latestHistoryEventClass)

getLatestHistoryEventGroupId

public String getLatestHistoryEventGroupId()

setLatestHistoryEventGroupId

public void setLatestHistoryEventGroupId(String latestHistoryEventGroupId)

getLatestHistoryEventId

public String getLatestHistoryEventId()

setLatestHistoryEventId

public void setLatestHistoryEventId(String latestHistoryEventId)

getLatestHistoryEventNote

public String getLatestHistoryEventNote()

setLatestHistoryEventNote

public void setLatestHistoryEventNote(String latestHistoryEventNote)

getLinks

public List getLinks()

setLinks

public void setLinks(List links)

getNote

public String getNote()

setNote

public void setNote(String note)

getReactionDtos

public List<ReactionDTO> getReactionDtos()

setReactionDtos

public void setReactionDtos(List<ReactionDTO> reactions)

getReferences

public List<ReferenceDTO> getReferences()

setReferences

public void setReferences(List<ReferenceDTO> references)

getSource

public String getSource()

setSource

public void setSource(String source)

getStatusCode

public String getStatusCode()

setStatusCode

public void setStatusCode(String statusCode)

getStatusText

public String getStatusText()

setStatusText

public void setStatusText(String statusText)

getSubSubclassEc

public String getSubSubclassEc()

setSubSubclassEc

public void setSubSubclassEc(String subSubclassEc)

getSubSubclassName

public String getSubSubclassName()

setSubSubclassName

public void setSubSubclassName(String subSubclassName)

getSubclassEc

public String getSubclassEc()

setSubclassEc

public void setSubclassEc(String subclassEc)

getSubclassName

public String getSubclassName()

setSubclassName

public void setSubclassName(String subclassName)

getSynonyms

public List getSynonyms()

setSynonyms

public void setSynonyms(List synonyms)

getSystematicName

public EnzymeNameDTO getSystematicName()

setSystematicName

public void setSystematicName(EnzymeNameDTO systematicName)

getTransferredEc

public String getTransferredEc()

setTransferredEc

public void setTransferredEc(String transferredEc)

getTransferredToEc

public String getTransferredToEc()

setTransferredToEc

public void setTransferredToEc(String transferredToEc)

getUniProtLinks

public List getUniProtLinks()

setUniProtLinks

public void setUniProtLinks(List uniProtLinks)

getUowId

public Integer getUowId()

setUowId

public void setUowId(Integer uowId)

getCofactor

public Object getCofactor(int index)

getComment

public CommentDTO getComment(int index)

getCommonName

public EnzymeNameDTO getCommonName(int index)

getLink

public EnzymeLinkDTO getLink(int index)

getReactionDto

public ReactionDTO getReactionDto(int index)

getReference

public ReferenceDTO getReference(int index)

getSynonym

public EnzymeNameDTO getSynonym(int index)

getUniProtLink

public EnzymeLinkDTO getUniProtLink(int index)

getLinks

public List getLinks(String dbCode)

getGoLinks

public List getGoLinks()

getCasLinks

public List getCasLinks()

reset

public void reset(org.apache.struts.action.ActionMapping mapping,
                  javax.servlet.http.HttpServletRequest request)

Overrides:

reset in class org.apache.struts.validator.ValidatorForm

validate

public org.apache.struts.action.ActionErrors validate(org.apache.struts.action.ActionMapping mapping,
                                                      javax.servlet.http.HttpServletRequest request)

Overrides:

validate in class org.apache.struts.validator.ValidatorForm