Serialized Form

Package uk.ac.ebi.intenz.domain.exceptions

Class uk.ac.ebi.intenz.domain.exceptions.DomainException extends Exception implements Serializable

serialVersionUID: -6121194983313071023L

Serialized Fields

messageKey

String messageKey

property

String property

Class uk.ac.ebi.intenz.domain.exceptions.EcException extends DomainException implements Serializable

serialVersionUID: 7460755784911875672L

Class uk.ac.ebi.intenz.domain.exceptions.EnzymeNameException extends DomainException implements Serializable

serialVersionUID: 5676315508371150769L

Class uk.ac.ebi.intenz.domain.exceptions.EnzymeReactionException extends DomainException implements Serializable

serialVersionUID: -5288612034876625163L

Class uk.ac.ebi.intenz.domain.exceptions.EnzymeReferenceException extends DomainException implements Serializable

serialVersionUID: 1347812603822224978L

Package uk.ac.ebi.intenz.tools.sib.exceptions

Class uk.ac.ebi.intenz.tools.sib.exceptions.EnzymeEntryValidationException extends Exception implements Serializable

Package uk.ac.ebi.intenz.tools.sib.sptr_enzyme

Class uk.ac.ebi.intenz.tools.sib.sptr_enzyme.EnzymeCrossReference extends Object implements Serializable

Serialized Fields

accessionNumber

String accessionNumber

databaseName

String databaseName

properties

Hashtable<K,V> properties

Class uk.ac.ebi.intenz.tools.sib.sptr_enzyme.EnzymeCrossReferenceException extends uk.ac.ebi.interfaces.sptr.SPTRException implements Serializable

Class uk.ac.ebi.intenz.tools.sib.sptr_enzyme.EnzymeEntryImpl extends Object implements Serializable

Serialized Fields

id

int id

ec

String ec

commonName

String commonName

cofactors

String cofactors

comment

String comment

synonyms

ArrayList<E> synonyms

reactions

ArrayList<E> reactions

xrefs

ArrayList<E> xrefs

isTransferredOrDeleted

boolean isTransferredOrDeleted

Package uk.ac.ebi.intenz.tools.sib.writer

Class uk.ac.ebi.intenz.tools.sib.writer.EnzymeFlatFileWriteException extends uk.ac.ebi.interfaces.sptr.SPTRException implements Serializable

Package uk.ac.ebi.intenz.webapp

Class uk.ac.ebi.intenz.webapp.IntenzWsEcServlet extends javax.servlet.http.HttpServlet implements Serializable

serialVersionUID: 4868575459199989086L

Serialized Fields

xmlExporterPool

XmlExporterPool xmlExporterPool

LOGGER

org.apache.log4j.Logger LOGGER

ds

DataSource ds

stats

IntEnzDbStatistics stats

Object containing release number and date.

relNum

String relNum

relDate

String relDate

descriptions

Map<K,V> descriptions

Package uk.ac.ebi.intenz.webapp.controller

Class uk.ac.ebi.intenz.webapp.controller.IntEnzActionServlet extends org.apache.struts.action.ActionServlet implements Serializable

serialVersionUID: -7398277166501014952L

Class uk.ac.ebi.intenz.webapp.controller.IntEnzContactServlet extends javax.servlet.http.HttpServlet implements Serializable

Class uk.ac.ebi.intenz.webapp.controller.IntEnzHandlerServlet extends javax.servlet.http.HttpServlet implements Serializable

serialVersionUID: -7167746042181128767L

Serialized Fields

LOGGER

org.apache.log4j.Logger LOGGER

envContext

Context envContext

Class uk.ac.ebi.intenz.webapp.controller.SitemapServlet extends javax.servlet.http.HttpServlet implements Serializable

Serialized Fields

LOGGER

org.apache.log4j.Logger LOGGER

Package uk.ac.ebi.intenz.webapp.dtos

Class uk.ac.ebi.intenz.webapp.dtos.CofactorDTO extends org.apache.struts.action.ActionForm implements Serializable

Serialized Fields

cofactorValue

String cofactorValue

xmlCofactorValue

String xmlCofactorValue

orderIn

String orderIn

source

String source

view

String view

sourceDisplay

String sourceDisplay

viewDisplayString

String viewDisplayString

viewDisplayImage

String viewDisplayImage

accession

String accession

compoundId

String compoundId

Class uk.ac.ebi.intenz.webapp.dtos.CommentDTO extends org.apache.struts.action.ActionForm implements Serializable

Serialized Fields

comment

String comment

xmlComment

String xmlComment

orderIn

String orderIn

source

String source

view

String view

sourceDisplay

String sourceDisplay

viewDisplayString

String viewDisplayString

viewDisplayImage

String viewDisplayImage

Class uk.ac.ebi.intenz.webapp.dtos.DataCommentDTO extends org.apache.struts.action.ActionForm implements Serializable

Serialized Fields

xmlComment

String xmlComment

Deprecated.

displayComment

String displayComment

Deprecated.

id

String id

Deprecated.

Class uk.ac.ebi.intenz.webapp.dtos.EcSearchForm extends org.apache.struts.validator.ValidatorForm implements Serializable

Serialized Fields

ec

String ec

Class uk.ac.ebi.intenz.webapp.dtos.EnzymeClassDTO extends GhostEntityDTO implements Serializable

Serialized Fields

description

String description

subclasses

List<E> subclasses

Class uk.ac.ebi.intenz.webapp.dtos.EnzymeDTO extends org.apache.struts.validator.ValidatorForm implements Serializable

Serialized Fields

uowId

Integer uowId

isActive

boolean isActive

id

String id

ec

String ec

transferredEc

String transferredEc

transferredToEc

String transferredToEc

systematicName

EnzymeNameDTO systematicName

note

String note

historyLine

String historyLine

latestHistoryEventNote

String latestHistoryEventNote

latestHistoryEventClass

String latestHistoryEventClass

latestHistoryEventGroupId

String latestHistoryEventGroupId

latestHistoryEventId

String latestHistoryEventId

latestHistoryBeforeId

String latestHistoryBeforeId

latestHistoryAfterId

String latestHistoryAfterId

statusCode

String statusCode

statusText

String statusText

source

String source

className

String className

classEc

String classEc

subclassName

String subclassName

subclassEc

String subclassEc

subSubclassName

String subSubclassName

subSubclassEc

String subSubclassEc

commonNames

List<E> commonNames

reactionDtos

List<E> reactionDtos

synonyms

List<E> synonyms

cofactors

List<E> cofactors

links

List<E> links

uniProtLinks

List<E> uniProtLinks

comments

List<E> comments

references

List<E> references

xcharsView

String xcharsView

Class uk.ac.ebi.intenz.webapp.dtos.EnzymeLinkDTO extends org.apache.struts.action.ActionForm implements Serializable

Serialized Fields

databaseName

String databaseName

databaseCode

String databaseCode

source

String source

url

String url

accession

String accession

name

String name

sourceDisplay

String sourceDisplay

view

String view

viewDisplayString

String viewDisplayString

viewDisplayImage

String viewDisplayImage

dataComment

String dataComment

Class uk.ac.ebi.intenz.webapp.dtos.EnzymeListDTO extends org.apache.struts.action.ActionForm implements Serializable

Serialized Fields

result

List<E> result

Class uk.ac.ebi.intenz.webapp.dtos.EnzymeNameDTO extends org.apache.struts.action.ActionForm implements Serializable

Serialized Fields

name

String name

xmlName

String xmlName

type

String type

qualifier

String qualifier

qualifierDisplay

String qualifierDisplay

orderIn

String orderIn

source

String source

view

String view

sourceDisplay

String sourceDisplay

viewDisplayString

String viewDisplayString

viewDisplayImage

String viewDisplayImage

Class uk.ac.ebi.intenz.webapp.dtos.EnzymeSubclassDTO extends GhostEntityDTO implements Serializable

Serialized Fields

description

String description

subSubclasses

List<E> subSubclasses

classEc

String classEc

className

String className

Class uk.ac.ebi.intenz.webapp.dtos.EnzymeSubSubclassDTO extends GhostEntityDTO implements Serializable

Serialized Fields

description

String description

entries

List<E> entries

className

String className

classEc

String classEc

subclassName

String subclassName

subclassEc

String subclassEc

Class uk.ac.ebi.intenz.webapp.dtos.FlatFileExportForm extends org.apache.struts.validator.ValidatorForm implements Serializable

Serialized Fields

versionNumber

String versionNumber

Class uk.ac.ebi.intenz.webapp.dtos.GhostEntityDTO extends org.apache.struts.validator.ValidatorForm implements Serializable

Serialized Fields

ec

String ec

name

String name

Class uk.ac.ebi.intenz.webapp.dtos.GhostEnzymeDTO extends GhostEntityDTO implements Serializable

Serialized Fields

enzymeId

String enzymeId

source

String source

status

String status

eventClass

String eventClass

eventNote

String eventNote

active

boolean active

Class uk.ac.ebi.intenz.webapp.dtos.GhostEnzymeListDTO extends org.apache.struts.validator.ValidatorForm implements Serializable

Serialized Fields

ghostEnzymeList

List<E> ghostEnzymeList

Class uk.ac.ebi.intenz.webapp.dtos.IubmbEnzymeDTO extends org.apache.struts.action.ActionForm implements Serializable

Serialized Fields

id

String id

ec

String ec

latestHistoryEventClass

String latestHistoryEventClass

latestHistoryEventNote

String latestHistoryEventNote

systematicName

EnzymeNameDTO systematicName

historyLine

String historyLine

commonNames

List<E> commonNames

reactions

List<E> reactions

synonyms

List<E> synonyms

links

List<E> links

comments

List<E> comments

references

List<E> references

statusCode

String statusCode

Class uk.ac.ebi.intenz.webapp.dtos.ReactionDTO extends org.apache.struts.action.ActionForm implements Serializable

Serialized Fields

id

long id

textualRepresentation

String textualRepresentation

xmlTextualRepresentation

String xmlTextualRepresentation

orderIn

String orderIn

source

String source

view

String view

iubmb

String iubmb

sourceDisplay

String sourceDisplay

viewDisplayString

String viewDisplayString

viewDisplayImage

String viewDisplayImage

status

String status

Class uk.ac.ebi.intenz.webapp.dtos.ReferenceDTO extends org.apache.struts.action.ActionForm implements Serializable

Serialized Fields

pubId

String pubId

type

String type

authors

String authors

title

String title

year

String year

pubName

String pubName

firstPage

String firstPage

lastPage

String lastPage

edition

String edition

editor

String editor

volume

String volume

publisher

String publisher

publisherPlace

String publisherPlace

pubMedId

String pubMedId

medlineId

String medlineId

view

String view

source

String source

sourceDisplay

String sourceDisplay

viewDisplayString

String viewDisplayString

viewDisplayImage

String viewDisplayImage

xmlAuthors

String xmlAuthors

xmlTitle

String xmlTitle

xmlPubName

String xmlPubName

xmlEditor

String xmlEditor

xmlPublisher

String xmlPublisher

Class uk.ac.ebi.intenz.webapp.dtos.SearchForm extends org.apache.struts.validator.ValidatorForm implements Serializable

Serialized Fields

q

String q

Class uk.ac.ebi.intenz.webapp.dtos.SibEnzymeDTO extends org.apache.struts.action.ActionForm implements Serializable

Serialized Fields

id

String id

ec

String ec

entry

String entry

statusCode

String statusCode

Package uk.ac.ebi.intenz.webapp.exceptions

Class uk.ac.ebi.intenz.webapp.exceptions.CommitException extends Exception implements Serializable

Class uk.ac.ebi.intenz.webapp.exceptions.DatabaseException extends Exception implements Serializable

Serialized Fields

sqlException

SQLException sqlException

Class uk.ac.ebi.intenz.webapp.exceptions.DeregisterException extends DomainException implements Serializable

Class uk.ac.ebi.intenz.webapp.exceptions.InvalidECException extends Exception implements Serializable

Class uk.ac.ebi.intenz.webapp.exceptions.InvalidLinkNameException extends Exception implements Serializable

Class uk.ac.ebi.intenz.webapp.exceptions.QueryException extends Exception implements Serializable

Package uk.ac.ebi.intenz.webapp.utilities

Class uk.ac.ebi.intenz.webapp.utilities.AutoGrowingList extends ArrayList implements Serializable

Serialized Fields

clazz

Class<T> clazz

logger

org.apache.log4j.Logger logger