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uk.ac.ebi.intenz.tools.sib.sptr_enzyme
Class EnzymeXrefFactory

java.lang.Object
  extended by uk.ac.ebi.interfaces.Factory
      extended by uk.ac.ebi.intenz.tools.sib.sptr_enzyme.EnzymeXrefFactory

public class EnzymeXrefFactory
extends uk.ac.ebi.interfaces.Factory

This class is a simple extension of the abstract Factory, which allows to create EnzymeCrossReference instances only.

Version:
preliminary - $Revision: 1.2 $ $Date: 2008/01/28 11:43:22 $
Author:
Michael Darsow

Field Summary
 
Fields inherited from class uk.ac.ebi.interfaces.Factory
COMMENT_ALLERGEN, COMMENT_ALTERNATIVE_INITIATION, COMMENT_ALTERNATIVE_PRODUCTS, COMMENT_ALTERNATIVE_PROMOTOR, COMMENT_ALTERNATIVE_SPLICING, COMMENT_BIOPHYSICOCHEMICAL_PROPERTIES, COMMENT_BIOTECHNOLOGY, COMMENT_CATALYTIC_ACTIVITY, COMMENT_CAUTION, COMMENT_COFACTOR, COMMENT_DATABASE, COMMENT_DEVELOPMENTAL_STAGE, COMMENT_DISEASE, COMMENT_DOMAIN, COMMENT_ENZYME_REGULATION, COMMENT_FUNCTION, COMMENT_INDUCTION, COMMENT_INTERACTION, COMMENT_MASS_SPECTROMETRY, COMMENT_MISCELLANEOUS, COMMENT_PATHWAY, COMMENT_PHARMACEUTICAL, COMMENT_POLYMORPHISM, COMMENT_PTM, COMMENT_RNA_EDITING, COMMENT_SIMILARITY, COMMENT_SUBCELLULAR_LOCATION, COMMENT_SUBUNIT, COMMENT_TISSUE_SPECIFICITY, COMMENT_TOXIC_DOSE, FEATURE_TYPE_ACT_SITE, FEATURE_TYPE_BINDING, FEATURE_TYPE_CA_BIND, FEATURE_TYPE_CARBOHYD, FEATURE_TYPE_CHAIN, FEATURE_TYPE_COILED, FEATURE_TYPE_COMPBIAS, FEATURE_TYPE_CONFLICT, FEATURE_TYPE_CROSSLNK, FEATURE_TYPE_DISULFID, FEATURE_TYPE_DNA_BIND, FEATURE_TYPE_DOMAIN, FEATURE_TYPE_HELIX, FEATURE_TYPE_INIT_MET, FEATURE_TYPE_LIPID, FEATURE_TYPE_METAL, FEATURE_TYPE_MOD_RES, FEATURE_TYPE_MOTIF, FEATURE_TYPE_MUTAGEN, FEATURE_TYPE_NON_CONS, FEATURE_TYPE_NON_TER, FEATURE_TYPE_NP_BIND, FEATURE_TYPE_PEPTIDE, FEATURE_TYPE_PROPEP, FEATURE_TYPE_REGION, FEATURE_TYPE_REPEAT, FEATURE_TYPE_SE_CYS, FEATURE_TYPE_SIGNAL, FEATURE_TYPE_SIMILAR, FEATURE_TYPE_SITE, FEATURE_TYPE_STRAND, FEATURE_TYPE_THIOETH, FEATURE_TYPE_THIOLEST, FEATURE_TYPE_TOPO_DOM, FEATURE_TYPE_TRANSIT, FEATURE_TYPE_TRANSMEM, FEATURE_TYPE_TURN, FEATURE_TYPE_UNSURE, FEATURE_TYPE_VARIANT, FEATURE_TYPE_VARSPLIC, FEATURE_TYPE_ZN_FING, XREF_AARHUSGHENT2DPAGE, XREF_AGD, XREF_ANU2DPAGE, XREF_ARRAYEXPRESS, XREF_BIOCYC, XREF_BLOCKS, XREF_BURULIST, XREF_CARBBANK, XREF_CATH, XREF_CAZy, XREF_COME, XREF_COMPLUYEAST2DPAGE, XREF_CORNEA2DPAGE, XREF_CYGD, XREF_DICTYBASE, XREF_DIP, XREF_DOSACCOBS2DPAGE, XREF_DRUG_BANK, XREF_ECHOBASE, XREF_ECO2DBASE, XREF_ECOGENE, XREF_EMBL, XREF_EMBL_ANNCON, XREF_EMBL_TPA, XREF_EMBL_WGS, XREF_ENSEMBL, XREF_ENZYME, XREF_EPO, XREF_FLYBASE, XREF_GCRDB, XREF_GENE3D, XREF_GENEDBSPOMBE, XREF_GENEFARM, XREF_GENEW, XREF_GENOME_REVIEWS, XREF_GERMONLINE, XREF_GLYCOSUITEDB, XREF_GO, XREF_GRAMENE, XREF_HAMAP, XREF_HCV_DB, XREF_HGNC, XREF_HINV, XREF_HIV, XREF_HPA, XREF_HSC2DPAGE, XREF_HSSP, XREF_INTACT, XREF_INTERPRO, XREF_IPI, XREF_IUPHAR, XREF_JPO, XREF_KEGG, XREF_LEGIOLIST, XREF_LEPROMA, XREF_LINKHUB, XREF_LISTILIST, XREF_MAIZE2DPAGE, XREF_MAIZEDB, XREF_MENDEL, XREF_MEROPS, XREF_MGI, XREF_MIM, XREF_MSDSITE, XREF_MYPULIST, XREF_OGP, XREF_PANDIT, XREF_PANTHER, XREF_PDB, XREF_PEROXIBASE, XREF_PFAM, XREF_PHCI2DPAGE, XREF_PHOSSITE, XREF_PHOTOLIST, XREF_PIR, XREF_PIRARC, XREF_PIRSF, XREF_PMMA2DPAGE, XREF_PPTASEDB, XREF_PRF, XREF_PRINTS, XREF_PRODOM, XREF_PROSITE, XREF_PROSITE_DOC, XREF_RAT_HEART_2DPAGE, XREF_REACTOME, XREF_REBASE, XREF_REFSEQ, XREF_REMTREMBL, XREF_REPRODUCTION2DPAGE, XREF_RGD, XREF_RZPD_PROTEXP, XREF_SAGALIST, XREF_SCOP, XREF_SGD, XREF_SIENA2DPAGE, XREF_SMART, XREF_SMR, XREF_STYGENE, XREF_SUBTILIST, XREF_SWISS2DPAGE, XREF_SWISSPROT, XREF_SWISSPROT_VARSPLIC, XREF_TAIR, XREF_TIGR, XREF_TIGRFAMS, XREF_TRANSFAC, XREF_TREMBL, XREF_TREMBL_NEW, XREF_TREMBL_VARSPLIC, XREF_TROME, XREF_TUBERCULIST, XREF_UNIGENE, XREF_UPO, XREF_VEGA, XREF_WORMBASE, XREF_WORMPEP, XREF_ZFIN
 
Constructor Summary
EnzymeXrefFactory()
           
 
Method Summary
 uk.ac.ebi.interfaces.sptr.Absorption copyAbsorptionInstance(uk.ac.ebi.interfaces.sptr.Absorption absorption)
           
 uk.ac.ebi.interfaces.interpro.Annotation copyAnnotationInstance(uk.ac.ebi.interfaces.interpro.Annotation annotation)
           
 uk.ac.ebi.interfaces.citation.Author copyAuthorInstance(uk.ac.ebi.interfaces.citation.Author author)
           
 uk.ac.ebi.interfaces.citation.Book copyBookInstance(uk.ac.ebi.interfaces.citation.Book book)
           
 uk.ac.ebi.interfaces.clustr.CluSTrEntry copyCluSTrEntry(uk.ac.ebi.interfaces.clustr.CluSTrEntry cluSTrEntry)
           
 uk.ac.ebi.interfaces.citation.ElectronicArticle copyElectronicArticleInstance(uk.ac.ebi.interfaces.citation.ElectronicArticle electronicArticle)
           
 uk.ac.ebi.interfaces.enzyme.EnzymeEntry copyEnzymeEntryInstance(uk.ac.ebi.interfaces.enzyme.EnzymeEntry entry)
           
 uk.ac.ebi.interfaces.feature.Feature copyFeatureInstance(uk.ac.ebi.interfaces.feature.Feature feature)
           
 uk.ac.ebi.interfaces.feature.FeatureLocation copyFeatureLocationInstance(uk.ac.ebi.interfaces.feature.FeatureLocation location)
           
 uk.ac.ebi.interfaces.sptr.Gene copyGeneInstance(uk.ac.ebi.interfaces.sptr.Gene gene)
           
 uk.ac.ebi.interfaces.go.GOEvidence copyGOEvidence(uk.ac.ebi.interfaces.go.GOEvidence goEvidence)
           
 uk.ac.ebi.interfaces.go.GOProteinData copyGOProteinData(uk.ac.ebi.interfaces.go.GOProteinData goProteinData)
           
 uk.ac.ebi.interfaces.go.GOStructure copyGOStructure(uk.ac.ebi.interfaces.go.GOStructure goStructure)
           
 uk.ac.ebi.interfaces.go.GOTerm copyGOTerm(uk.ac.ebi.interfaces.go.GOTerm goTerm)
           
 uk.ac.ebi.interfaces.integr8.Gene copyIntegr8GeneInstance(uk.ac.ebi.interfaces.sptr.Gene gene)
           
 uk.ac.ebi.interfaces.integr8.Gene copyIntegr8GeneInstance(uk.ac.ebi.interfaces.integr8.Gene gene)
           
 uk.ac.ebi.interfaces.integr8.SPTREntry copyIntegr8SPTREntryInstance(uk.ac.ebi.interfaces.integr8.SPTREntry sptrEntry)
           
 uk.ac.ebi.interfaces.interpro.InterProCrossReference copyInterProCrossReferenceInstance(uk.ac.ebi.interfaces.interpro.InterProCrossReference interProCrossReference)
           
 uk.ac.ebi.interfaces.interpro.InterProEntry copyInterProEntry(uk.ac.ebi.interfaces.interpro.InterProEntry interProEntry)
           
 uk.ac.ebi.interfaces.interpro.InterProProteinData copyInterProProteinData(uk.ac.ebi.interfaces.interpro.InterProProteinData interProProteinData)
           
 uk.ac.ebi.interfaces.interpro.InterProStructure copyInterProStructure(uk.ac.ebi.interfaces.interpro.InterProStructure interProStructure)
           
 uk.ac.ebi.interfaces.sptr.Isoform copyIsoformInstance(uk.ac.ebi.interfaces.sptr.Isoform isoform)
           
 uk.ac.ebi.interfaces.citation.JournalArticle copyJournalArticleInstance(uk.ac.ebi.interfaces.citation.JournalArticle journalArticle)
           
 uk.ac.ebi.interfaces.sptr.KineticParameter copyKineticParameterInstance(uk.ac.ebi.interfaces.sptr.KineticParameter kineticParameter)
           
 uk.ac.ebi.interfaces.sptr.MassSpectrometryRange copyMassSpectrometryRangeInstance(uk.ac.ebi.interfaces.sptr.MassSpectrometryRange massSpectrometryRange)
           
 uk.ac.ebi.interfaces.sptr.MaximumVelocity copyMaximumVelocityInstance(uk.ac.ebi.interfaces.sptr.MaximumVelocity maximumVelocity)
           
 uk.ac.ebi.interfaces.sptr.MichaelisConstant copyMichaelisConstantInstance(uk.ac.ebi.interfaces.sptr.MichaelisConstant michaelisConstant)
           
 uk.ac.ebi.interfaces.citation.Patent copyPatentInstance(uk.ac.ebi.interfaces.citation.Patent patent)
           
 uk.ac.ebi.interfaces.pythia.PredictiveInstance copyPredictiveInstance(uk.ac.ebi.interfaces.pythia.PredictiveInstance predictiveInstance)
           
 uk.ac.ebi.interfaces.integr8.ProteomeEntry copyProteomeEntryInstance(uk.ac.ebi.interfaces.integr8.ProteomeEntry proteomeEntry)
           
 uk.ac.ebi.interfaces.pythia.PythiaEntry copyPythiaEntryInstance(uk.ac.ebi.interfaces.pythia.PythiaEntry pythiaEntry)
           
 uk.ac.ebi.interfaces.interpro.SignatureDBHit copySignaturDBHit(uk.ac.ebi.interfaces.interpro.SignatureDBHit signatureDBHit)
           
 uk.ac.ebi.interfaces.interpro.SignatureDBEntry copySignatureDBEntry(uk.ac.ebi.interfaces.interpro.SignatureDBEntry signatureDBEntry)
           
 uk.ac.ebi.interfaces.sptr.spin.SPINSubmission copySPINSubmissionInstance(uk.ac.ebi.interfaces.sptr.spin.SPINSubmission spinSubmission)
           
 uk.ac.ebi.interfaces.sptr.SPTRComment copySPTRCommentInstance(uk.ac.ebi.interfaces.sptr.SPTRComment sptrComment)
           
 uk.ac.ebi.interfaces.sptr.SPTRCrossReference copySPTRCrossReference(uk.ac.ebi.interfaces.sptr.SPTRCrossReference sptrCrossReference)
           
 uk.ac.ebi.interfaces.sptr.SPTRCrossReference copySPTRCrossReferenceInstance(uk.ac.ebi.interfaces.sptr.SPTRCrossReference sptrCrossReference)
           
 uk.ac.ebi.interfaces.sptr.SPTREntry copySPTREntryInstance(uk.ac.ebi.interfaces.sptr.SPTREntry entry)
           
 uk.ac.ebi.interfaces.citation.Submission copySubmissionInstance(uk.ac.ebi.interfaces.citation.Submission submission)
           
 uk.ac.ebi.interfaces.citation.Thesis copyThesisInstance(uk.ac.ebi.interfaces.citation.Thesis thesis)
           
 uk.ac.ebi.interfaces.uniparc.UniParcCrossReference copyUniParcCrossReference(uk.ac.ebi.interfaces.uniparc.UniParcCrossReference uniParcCrossReference)
           
 uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData copyUniParcCrossReferenceMetaData(uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData uniParcCrossReferenceMetaData)
           
 uk.ac.ebi.interfaces.uniparc.UniParcEntry copyUniParcEntry(uk.ac.ebi.interfaces.uniparc.UniParcEntry uniParcEntry)
           
 uk.ac.ebi.interfaces.citation.UnpublishedObservations copyUnpublishedObservationsInstance(uk.ac.ebi.interfaces.citation.UnpublishedObservations unpublishedObservations)
           
 uk.ac.ebi.interfaces.citation.UnpublishedResults copyUnpublishedResultsInstance(uk.ac.ebi.interfaces.citation.UnpublishedResults unpublishedResults)
           
 uk.ac.ebi.interfaces.sptr.Absorption newAbsorptionInstance()
           
 uk.ac.ebi.interfaces.interpro.Annotation newAnnotationInstance()
           
 uk.ac.ebi.interfaces.citation.Author newAuthorInstance()
           
 uk.ac.ebi.interfaces.citation.Book newBookInstance()
           
 uk.ac.ebi.interfaces.uniref.ClusterMember newClusterMember(String s)
           
 uk.ac.ebi.interfaces.clustr.CluSTrEntry newCluSTrEntry()
           
 uk.ac.ebi.interfaces.citation.ElectronicArticle newElectronicArticleInstance()
           
 uk.ac.ebi.interfaces.sptr.SPTRCrossReference newEnzymeCrossReference(String type)
           Returns a new instance of an EnzymeCrossReference.
 uk.ac.ebi.interfaces.enzyme.EnzymeEntry newEnzymeEntryInstance()
           
 uk.ac.ebi.interfaces.feature.Feature newFeatureInstance(String featureType)
           
 uk.ac.ebi.interfaces.feature.FeatureLocation newFeatureLocationInstance()
           
 uk.ac.ebi.interfaces.sptr.Gene newGeneInstance()
           
 uk.ac.ebi.interfaces.go.GOEvidence newGOEvidence()
           
 uk.ac.ebi.interfaces.go.GOProteinData newGOProteinData(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
           
 uk.ac.ebi.interfaces.go.GOStructure newGOStructure()
           
 uk.ac.ebi.interfaces.go.GOTerm newGOTerm()
           
 uk.ac.ebi.interfaces.integr8.Gene newIntegr8GeneInstance()
           
 uk.ac.ebi.interfaces.integr8.SPTREntry newIntegr8SPTREntryInstance(int i)
           
 uk.ac.ebi.interfaces.integr8.SPTREntry newIntegr8SPTREntryInstance(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
           
 uk.ac.ebi.interfaces.interpro.InterProCrossReference newInterProCrossReferenceInstance(String s)
           
 uk.ac.ebi.interfaces.interpro.InterProEntry newInterProEntry()
           
 uk.ac.ebi.interfaces.interpro.InterProProteinData newInterProProteinData(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
           
 uk.ac.ebi.interfaces.interpro.InterProStructure newInterProStructure(uk.ac.ebi.interfaces.interpro.InterProEntry interProEntry)
           
 uk.ac.ebi.interfaces.sptr.Isoform newIsoformInstance()
           
 uk.ac.ebi.interfaces.citation.JournalArticle newJournalArticleInstance()
           
 uk.ac.ebi.interfaces.sptr.KineticParameter newKineticParameterInstance()
           
 uk.ac.ebi.interfaces.sptr.MassSpectrometryRange newMassSpectrometryRangeInstance()
           
 uk.ac.ebi.interfaces.sptr.MaximumVelocity newMaximumVelocityInstance()
           
 uk.ac.ebi.interfaces.sptr.MichaelisConstant newMichaelisConstantInstance()
           
 uk.ac.ebi.interfaces.citation.Patent newPatentInstance()
           
 uk.ac.ebi.interfaces.pythia.PredictiveInstance newPredictiveInstance(String s)
           
 uk.ac.ebi.interfaces.integr8.ProteomeEntry newProteomeEntryInstance()
           
 uk.ac.ebi.interfaces.pythia.PythiaEntry newPythiaEntryInstance(int i)
           
 uk.ac.ebi.interfaces.interpro.SignatureDBEntry newSignatureDBEntry(int i)
           
 uk.ac.ebi.interfaces.interpro.SignatureDBHit newSignatureDBHit()
           
 uk.ac.ebi.interfaces.sptr.spin.SPINSubmission newSPINSubmissionInstance()
           
 uk.ac.ebi.interfaces.sptr.SPTRComment newSPTRCommentInstance(String type)
           
 uk.ac.ebi.interfaces.sptr.SPTRCrossReference newSPTRCrossReference(String type)
           
 uk.ac.ebi.interfaces.sptr.SPTRCrossReference newSPTRCrossReferenceInstance(String s)
           
 uk.ac.ebi.interfaces.sptr.SPTREntry newSPTREntryInstance()
           
 uk.ac.ebi.interfaces.sptr.SPTREntry newSPTREntryInstance(int entryType)
           
 uk.ac.ebi.interfaces.citation.Submission newSubmissionInstance()
           
 uk.ac.ebi.interfaces.citation.Thesis newThesisInstance()
           
 uk.ac.ebi.interfaces.uniparc.UniParcCrossReference newUniParcCrossReference(String s)
           
 uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData newUniParcCrossReferenceMetaData()
           
 uk.ac.ebi.interfaces.uniparc.UniParcEntry newUniParcEntry()
           
 uk.ac.ebi.interfaces.uniparc.UniParcEntry newUniParcEntry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry, String s, uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData uniParcCrossReferenceMetaData)
           
 uk.ac.ebi.interfaces.uniref.UniRef100Entry newUniRef100Entry()
           
 uk.ac.ebi.interfaces.uniref.UniRef100Entry newUniRef100Entry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
           
 uk.ac.ebi.interfaces.uniref.UniRef50Entry newUniRef50Entry()
           
 uk.ac.ebi.interfaces.uniref.UniRef50Entry newUniRef50Entry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
           
 uk.ac.ebi.interfaces.uniref.UniRef90Entry newUniRef90Entry()
           
 uk.ac.ebi.interfaces.uniref.UniRef90Entry newUniRef90Entry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
           
 uk.ac.ebi.interfaces.citation.UnpublishedObservations newUnpublishedObservationsInstance()
           
 uk.ac.ebi.interfaces.citation.UnpublishedResults newUnpublishedResultsInstance()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

EnzymeXrefFactory

public EnzymeXrefFactory()
Method Detail

newSPTREntryInstance

public uk.ac.ebi.interfaces.sptr.SPTREntry newSPTREntryInstance(int entryType)
                                                         throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
newSPTREntryInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

newSPTREntryInstance

public uk.ac.ebi.interfaces.sptr.SPTREntry newSPTREntryInstance()
                                                         throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
newSPTREntryInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

copySPTREntryInstance

public uk.ac.ebi.interfaces.sptr.SPTREntry copySPTREntryInstance(uk.ac.ebi.interfaces.sptr.SPTREntry entry)
                                                          throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
copySPTREntryInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

newEnzymeEntryInstance

public uk.ac.ebi.interfaces.enzyme.EnzymeEntry newEnzymeEntryInstance()
                                                               throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
newEnzymeEntryInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

copyEnzymeEntryInstance

public uk.ac.ebi.interfaces.enzyme.EnzymeEntry copyEnzymeEntryInstance(uk.ac.ebi.interfaces.enzyme.EnzymeEntry entry)
                                                                throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
copyEnzymeEntryInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

newFeatureInstance

public uk.ac.ebi.interfaces.feature.Feature newFeatureInstance(String featureType)
                                                        throws uk.ac.ebi.interfaces.feature.FeatureException
Specified by:
newFeatureInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.feature.FeatureException

copyFeatureInstance

public uk.ac.ebi.interfaces.feature.Feature copyFeatureInstance(uk.ac.ebi.interfaces.feature.Feature feature)
                                                         throws uk.ac.ebi.interfaces.feature.FeatureException
Specified by:
copyFeatureInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.feature.FeatureException

newFeatureLocationInstance

public uk.ac.ebi.interfaces.feature.FeatureLocation newFeatureLocationInstance()
                                                                        throws uk.ac.ebi.interfaces.feature.FeatureException
Specified by:
newFeatureLocationInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.feature.FeatureException

copyFeatureLocationInstance

public uk.ac.ebi.interfaces.feature.FeatureLocation copyFeatureLocationInstance(uk.ac.ebi.interfaces.feature.FeatureLocation location)
                                                                         throws uk.ac.ebi.interfaces.feature.FeatureException
Specified by:
copyFeatureLocationInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.feature.FeatureException

newAuthorInstance

public uk.ac.ebi.interfaces.citation.Author newAuthorInstance()
                                                       throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
newAuthorInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

copyAuthorInstance

public uk.ac.ebi.interfaces.citation.Author copyAuthorInstance(uk.ac.ebi.interfaces.citation.Author author)
                                                        throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
copyAuthorInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

newBookInstance

public uk.ac.ebi.interfaces.citation.Book newBookInstance()
                                                   throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
newBookInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

copyBookInstance

public uk.ac.ebi.interfaces.citation.Book copyBookInstance(uk.ac.ebi.interfaces.citation.Book book)
                                                    throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
copyBookInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

newElectronicArticleInstance

public uk.ac.ebi.interfaces.citation.ElectronicArticle newElectronicArticleInstance()
                                                                             throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
newElectronicArticleInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

copyElectronicArticleInstance

public uk.ac.ebi.interfaces.citation.ElectronicArticle copyElectronicArticleInstance(uk.ac.ebi.interfaces.citation.ElectronicArticle electronicArticle)
                                                                              throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
copyElectronicArticleInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

newJournalArticleInstance

public uk.ac.ebi.interfaces.citation.JournalArticle newJournalArticleInstance()
                                                                       throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
newJournalArticleInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

copyJournalArticleInstance

public uk.ac.ebi.interfaces.citation.JournalArticle copyJournalArticleInstance(uk.ac.ebi.interfaces.citation.JournalArticle journalArticle)
                                                                        throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
copyJournalArticleInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

newPatentInstance

public uk.ac.ebi.interfaces.citation.Patent newPatentInstance()
                                                       throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
newPatentInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

copyPatentInstance

public uk.ac.ebi.interfaces.citation.Patent copyPatentInstance(uk.ac.ebi.interfaces.citation.Patent patent)
                                                        throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
copyPatentInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

newSubmissionInstance

public uk.ac.ebi.interfaces.citation.Submission newSubmissionInstance()
                                                               throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
newSubmissionInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

copySubmissionInstance

public uk.ac.ebi.interfaces.citation.Submission copySubmissionInstance(uk.ac.ebi.interfaces.citation.Submission submission)
                                                                throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
copySubmissionInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

newThesisInstance

public uk.ac.ebi.interfaces.citation.Thesis newThesisInstance()
                                                       throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
newThesisInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

copyThesisInstance

public uk.ac.ebi.interfaces.citation.Thesis copyThesisInstance(uk.ac.ebi.interfaces.citation.Thesis thesis)
                                                        throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
copyThesisInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

newUnpublishedObservationsInstance

public uk.ac.ebi.interfaces.citation.UnpublishedObservations newUnpublishedObservationsInstance()
                                                                                         throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
newUnpublishedObservationsInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

copyUnpublishedObservationsInstance

public uk.ac.ebi.interfaces.citation.UnpublishedObservations copyUnpublishedObservationsInstance(uk.ac.ebi.interfaces.citation.UnpublishedObservations unpublishedObservations)
                                                                                          throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
copyUnpublishedObservationsInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

newUnpublishedResultsInstance

public uk.ac.ebi.interfaces.citation.UnpublishedResults newUnpublishedResultsInstance()
                                                                               throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
newUnpublishedResultsInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

copyUnpublishedResultsInstance

public uk.ac.ebi.interfaces.citation.UnpublishedResults copyUnpublishedResultsInstance(uk.ac.ebi.interfaces.citation.UnpublishedResults unpublishedResults)
                                                                                throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
copyUnpublishedResultsInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

newSPTRCommentInstance

public uk.ac.ebi.interfaces.sptr.SPTRComment newSPTRCommentInstance(String type)
                                                             throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
newSPTRCommentInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

copySPTRCommentInstance

public uk.ac.ebi.interfaces.sptr.SPTRComment copySPTRCommentInstance(uk.ac.ebi.interfaces.sptr.SPTRComment sptrComment)
                                                              throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
copySPTRCommentInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

newIsoformInstance

public uk.ac.ebi.interfaces.sptr.Isoform newIsoformInstance()
                                                     throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
newIsoformInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

copyIsoformInstance

public uk.ac.ebi.interfaces.sptr.Isoform copyIsoformInstance(uk.ac.ebi.interfaces.sptr.Isoform isoform)
                                                      throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
copyIsoformInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

newEnzymeCrossReference

public uk.ac.ebi.interfaces.sptr.SPTRCrossReference newEnzymeCrossReference(String type)
                                                                     throws uk.ac.ebi.interfaces.sptr.SPTRException
Returns a new instance of an EnzymeCrossReference.

Returns:
A new instance of an EnzymeCrossReference.
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException - Needs to be implemented by individual application.

newSPTRCrossReference

public uk.ac.ebi.interfaces.sptr.SPTRCrossReference newSPTRCrossReference(String type)
                                                                   throws uk.ac.ebi.interfaces.sptr.SPTRException
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

copySPTRCrossReference

public uk.ac.ebi.interfaces.sptr.SPTRCrossReference copySPTRCrossReference(uk.ac.ebi.interfaces.sptr.SPTRCrossReference sptrCrossReference)
                                                                    throws uk.ac.ebi.interfaces.sptr.SPTRException
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

copyProteomeEntryInstance

public uk.ac.ebi.interfaces.integr8.ProteomeEntry copyProteomeEntryInstance(uk.ac.ebi.interfaces.integr8.ProteomeEntry proteomeEntry)
                                                                     throws uk.ac.ebi.interfaces.integr8.Integr8Exception
Specified by:
copyProteomeEntryInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.integr8.Integr8Exception

newSPINSubmissionInstance

public uk.ac.ebi.interfaces.sptr.spin.SPINSubmission newSPINSubmissionInstance()
                                                                        throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
newSPINSubmissionInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

copySPINSubmissionInstance

public uk.ac.ebi.interfaces.sptr.spin.SPINSubmission copySPINSubmissionInstance(uk.ac.ebi.interfaces.sptr.spin.SPINSubmission spinSubmission)
                                                                         throws uk.ac.ebi.interfaces.citation.CitationException
Specified by:
copySPINSubmissionInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.citation.CitationException

newSPTRCrossReferenceInstance

public uk.ac.ebi.interfaces.sptr.SPTRCrossReference newSPTRCrossReferenceInstance(String s)
                                                                           throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
newSPTRCrossReferenceInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

copySPTRCrossReferenceInstance

public uk.ac.ebi.interfaces.sptr.SPTRCrossReference copySPTRCrossReferenceInstance(uk.ac.ebi.interfaces.sptr.SPTRCrossReference sptrCrossReference)
                                                                            throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
copySPTRCrossReferenceInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

newPythiaEntryInstance

public uk.ac.ebi.interfaces.pythia.PythiaEntry newPythiaEntryInstance(int i)
                                                               throws uk.ac.ebi.interfaces.pythia.PythiaException
Specified by:
newPythiaEntryInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.pythia.PythiaException

copyPythiaEntryInstance

public uk.ac.ebi.interfaces.pythia.PythiaEntry copyPythiaEntryInstance(uk.ac.ebi.interfaces.pythia.PythiaEntry pythiaEntry)
                                                                throws uk.ac.ebi.interfaces.pythia.PythiaException
Specified by:
copyPythiaEntryInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.pythia.PythiaException

newPredictiveInstance

public uk.ac.ebi.interfaces.pythia.PredictiveInstance newPredictiveInstance(String s)
                                                                     throws uk.ac.ebi.interfaces.pythia.PythiaException
Specified by:
newPredictiveInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.pythia.PythiaException

copyPredictiveInstance

public uk.ac.ebi.interfaces.pythia.PredictiveInstance copyPredictiveInstance(uk.ac.ebi.interfaces.pythia.PredictiveInstance predictiveInstance)
                                                                      throws uk.ac.ebi.interfaces.pythia.PythiaException
Specified by:
copyPredictiveInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.pythia.PythiaException

newInterProProteinData

public uk.ac.ebi.interfaces.interpro.InterProProteinData newInterProProteinData(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
                                                                         throws uk.ac.ebi.interfaces.interpro.InterProException
Specified by:
newInterProProteinData in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.interpro.InterProException

copyInterProProteinData

public uk.ac.ebi.interfaces.interpro.InterProProteinData copyInterProProteinData(uk.ac.ebi.interfaces.interpro.InterProProteinData interProProteinData)
                                                                          throws uk.ac.ebi.interfaces.interpro.InterProException
Specified by:
copyInterProProteinData in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.interpro.InterProException

newInterProStructure

public uk.ac.ebi.interfaces.interpro.InterProStructure newInterProStructure(uk.ac.ebi.interfaces.interpro.InterProEntry interProEntry)
                                                                     throws uk.ac.ebi.interfaces.interpro.InterProException
Specified by:
newInterProStructure in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.interpro.InterProException

copyInterProStructure

public uk.ac.ebi.interfaces.interpro.InterProStructure copyInterProStructure(uk.ac.ebi.interfaces.interpro.InterProStructure interProStructure)
                                                                      throws uk.ac.ebi.interfaces.interpro.InterProException
Specified by:
copyInterProStructure in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.interpro.InterProException

newInterProEntry

public uk.ac.ebi.interfaces.interpro.InterProEntry newInterProEntry()
                                                             throws uk.ac.ebi.interfaces.interpro.InterProException
Specified by:
newInterProEntry in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.interpro.InterProException

copyInterProEntry

public uk.ac.ebi.interfaces.interpro.InterProEntry copyInterProEntry(uk.ac.ebi.interfaces.interpro.InterProEntry interProEntry)
                                                              throws uk.ac.ebi.interfaces.interpro.InterProException
Specified by:
copyInterProEntry in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.interpro.InterProException

newSignatureDBHit

public uk.ac.ebi.interfaces.interpro.SignatureDBHit newSignatureDBHit()
                                                               throws uk.ac.ebi.interfaces.interpro.InterProException
Specified by:
newSignatureDBHit in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.interpro.InterProException

copySignaturDBHit

public uk.ac.ebi.interfaces.interpro.SignatureDBHit copySignaturDBHit(uk.ac.ebi.interfaces.interpro.SignatureDBHit signatureDBHit)
                                                               throws uk.ac.ebi.interfaces.interpro.InterProException
Specified by:
copySignaturDBHit in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.interpro.InterProException

newSignatureDBEntry

public uk.ac.ebi.interfaces.interpro.SignatureDBEntry newSignatureDBEntry(int i)
                                                                   throws uk.ac.ebi.interfaces.interpro.InterProException
Specified by:
newSignatureDBEntry in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.interpro.InterProException

copySignatureDBEntry

public uk.ac.ebi.interfaces.interpro.SignatureDBEntry copySignatureDBEntry(uk.ac.ebi.interfaces.interpro.SignatureDBEntry signatureDBEntry)
                                                                    throws uk.ac.ebi.interfaces.interpro.InterProException
Specified by:
copySignatureDBEntry in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.interpro.InterProException

newAnnotationInstance

public uk.ac.ebi.interfaces.interpro.Annotation newAnnotationInstance()
                                                               throws uk.ac.ebi.interfaces.interpro.InterProException
Specified by:
newAnnotationInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.interpro.InterProException

copyAnnotationInstance

public uk.ac.ebi.interfaces.interpro.Annotation copyAnnotationInstance(uk.ac.ebi.interfaces.interpro.Annotation annotation)
                                                                throws uk.ac.ebi.interfaces.interpro.InterProException
Specified by:
copyAnnotationInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.interpro.InterProException

newInterProCrossReferenceInstance

public uk.ac.ebi.interfaces.interpro.InterProCrossReference newInterProCrossReferenceInstance(String s)
                                                                                       throws uk.ac.ebi.interfaces.interpro.InterProException
Specified by:
newInterProCrossReferenceInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.interpro.InterProException

copyInterProCrossReferenceInstance

public uk.ac.ebi.interfaces.interpro.InterProCrossReference copyInterProCrossReferenceInstance(uk.ac.ebi.interfaces.interpro.InterProCrossReference interProCrossReference)
                                                                                        throws uk.ac.ebi.interfaces.interpro.InterProException
Specified by:
copyInterProCrossReferenceInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.interpro.InterProException

newGOTerm

public uk.ac.ebi.interfaces.go.GOTerm newGOTerm()
                                         throws uk.ac.ebi.interfaces.go.GOException
Specified by:
newGOTerm in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.go.GOException

copyGOTerm

public uk.ac.ebi.interfaces.go.GOTerm copyGOTerm(uk.ac.ebi.interfaces.go.GOTerm goTerm)
                                          throws uk.ac.ebi.interfaces.go.GOException
Specified by:
copyGOTerm in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.go.GOException

newGOEvidence

public uk.ac.ebi.interfaces.go.GOEvidence newGOEvidence()
                                                 throws uk.ac.ebi.interfaces.go.GOException
Specified by:
newGOEvidence in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.go.GOException

copyGOEvidence

public uk.ac.ebi.interfaces.go.GOEvidence copyGOEvidence(uk.ac.ebi.interfaces.go.GOEvidence goEvidence)
                                                  throws uk.ac.ebi.interfaces.go.GOException
Specified by:
copyGOEvidence in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.go.GOException

newGOProteinData

public uk.ac.ebi.interfaces.go.GOProteinData newGOProteinData(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
                                                       throws uk.ac.ebi.interfaces.go.GOException
Specified by:
newGOProteinData in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.go.GOException

copyGOProteinData

public uk.ac.ebi.interfaces.go.GOProteinData copyGOProteinData(uk.ac.ebi.interfaces.go.GOProteinData goProteinData)
                                                        throws uk.ac.ebi.interfaces.go.GOException
Specified by:
copyGOProteinData in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.go.GOException

newGOStructure

public uk.ac.ebi.interfaces.go.GOStructure newGOStructure()
                                                   throws uk.ac.ebi.interfaces.go.GOException
Specified by:
newGOStructure in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.go.GOException

copyGOStructure

public uk.ac.ebi.interfaces.go.GOStructure copyGOStructure(uk.ac.ebi.interfaces.go.GOStructure goStructure)
                                                    throws uk.ac.ebi.interfaces.go.GOException
Specified by:
copyGOStructure in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.go.GOException

newCluSTrEntry

public uk.ac.ebi.interfaces.clustr.CluSTrEntry newCluSTrEntry()
                                                       throws uk.ac.ebi.interfaces.clustr.CluSTrException
Specified by:
newCluSTrEntry in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.clustr.CluSTrException

copyCluSTrEntry

public uk.ac.ebi.interfaces.clustr.CluSTrEntry copyCluSTrEntry(uk.ac.ebi.interfaces.clustr.CluSTrEntry cluSTrEntry)
                                                        throws uk.ac.ebi.interfaces.clustr.CluSTrException
Specified by:
copyCluSTrEntry in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.clustr.CluSTrException

newUniParcEntry

public uk.ac.ebi.interfaces.uniparc.UniParcEntry newUniParcEntry()
                                                          throws uk.ac.ebi.interfaces.uniparc.UniParcException
Specified by:
newUniParcEntry in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.uniparc.UniParcException

newUniParcEntry

public uk.ac.ebi.interfaces.uniparc.UniParcEntry newUniParcEntry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry,
                                                                 String s,
                                                                 uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData uniParcCrossReferenceMetaData)
                                                          throws uk.ac.ebi.interfaces.uniparc.UniParcException
Specified by:
newUniParcEntry in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.uniparc.UniParcException

copyUniParcEntry

public uk.ac.ebi.interfaces.uniparc.UniParcEntry copyUniParcEntry(uk.ac.ebi.interfaces.uniparc.UniParcEntry uniParcEntry)
                                                           throws uk.ac.ebi.interfaces.uniparc.UniParcException
Specified by:
copyUniParcEntry in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.uniparc.UniParcException

newUniParcCrossReference

public uk.ac.ebi.interfaces.uniparc.UniParcCrossReference newUniParcCrossReference(String s)
                                                                            throws uk.ac.ebi.interfaces.uniparc.UniParcException
Specified by:
newUniParcCrossReference in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.uniparc.UniParcException

copyUniParcCrossReference

public uk.ac.ebi.interfaces.uniparc.UniParcCrossReference copyUniParcCrossReference(uk.ac.ebi.interfaces.uniparc.UniParcCrossReference uniParcCrossReference)
                                                                             throws uk.ac.ebi.interfaces.uniparc.UniParcException
Specified by:
copyUniParcCrossReference in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.uniparc.UniParcException

newUniParcCrossReferenceMetaData

public uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData newUniParcCrossReferenceMetaData()
                                                                                            throws uk.ac.ebi.interfaces.uniparc.UniParcException
Specified by:
newUniParcCrossReferenceMetaData in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.uniparc.UniParcException

copyUniParcCrossReferenceMetaData

public uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData copyUniParcCrossReferenceMetaData(uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData uniParcCrossReferenceMetaData)
                                                                                             throws uk.ac.ebi.interfaces.uniparc.UniParcException
Specified by:
copyUniParcCrossReferenceMetaData in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.uniparc.UniParcException

newUniRef100Entry

public uk.ac.ebi.interfaces.uniref.UniRef100Entry newUniRef100Entry()
                                                             throws uk.ac.ebi.interfaces.uniref.UniRefException
Specified by:
newUniRef100Entry in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.uniref.UniRefException

newUniRef100Entry

public uk.ac.ebi.interfaces.uniref.UniRef100Entry newUniRef100Entry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
                                                             throws uk.ac.ebi.interfaces.uniref.UniRefException
Specified by:
newUniRef100Entry in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.uniref.UniRefException

newUniRef90Entry

public uk.ac.ebi.interfaces.uniref.UniRef90Entry newUniRef90Entry()
                                                           throws uk.ac.ebi.interfaces.uniref.UniRefException
Specified by:
newUniRef90Entry in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.uniref.UniRefException

newUniRef90Entry

public uk.ac.ebi.interfaces.uniref.UniRef90Entry newUniRef90Entry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
                                                           throws uk.ac.ebi.interfaces.uniref.UniRefException
Specified by:
newUniRef90Entry in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.uniref.UniRefException

newUniRef50Entry

public uk.ac.ebi.interfaces.uniref.UniRef50Entry newUniRef50Entry()
                                                           throws uk.ac.ebi.interfaces.uniref.UniRefException
Specified by:
newUniRef50Entry in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.uniref.UniRefException

newUniRef50Entry

public uk.ac.ebi.interfaces.uniref.UniRef50Entry newUniRef50Entry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
                                                           throws uk.ac.ebi.interfaces.uniref.UniRefException
Specified by:
newUniRef50Entry in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.uniref.UniRefException

newClusterMember

public uk.ac.ebi.interfaces.uniref.ClusterMember newClusterMember(String s)
                                                           throws uk.ac.ebi.interfaces.uniref.UniRefException
Specified by:
newClusterMember in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.uniref.UniRefException

newGeneInstance

public uk.ac.ebi.interfaces.sptr.Gene newGeneInstance()
                                               throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
newGeneInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

copyGeneInstance

public uk.ac.ebi.interfaces.sptr.Gene copyGeneInstance(uk.ac.ebi.interfaces.sptr.Gene gene)
                                                throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
copyGeneInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

newIntegr8SPTREntryInstance

public uk.ac.ebi.interfaces.integr8.SPTREntry newIntegr8SPTREntryInstance(int i)
                                                                   throws uk.ac.ebi.interfaces.integr8.Integr8Exception
Specified by:
newIntegr8SPTREntryInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.integr8.Integr8Exception

newIntegr8SPTREntryInstance

public uk.ac.ebi.interfaces.integr8.SPTREntry newIntegr8SPTREntryInstance(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
                                                                   throws uk.ac.ebi.interfaces.integr8.Integr8Exception
Specified by:
newIntegr8SPTREntryInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.integr8.Integr8Exception

copyIntegr8SPTREntryInstance

public uk.ac.ebi.interfaces.integr8.SPTREntry copyIntegr8SPTREntryInstance(uk.ac.ebi.interfaces.integr8.SPTREntry sptrEntry)
                                                                    throws uk.ac.ebi.interfaces.integr8.Integr8Exception
Specified by:
copyIntegr8SPTREntryInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.integr8.Integr8Exception

newIntegr8GeneInstance

public uk.ac.ebi.interfaces.integr8.Gene newIntegr8GeneInstance()
                                                         throws uk.ac.ebi.interfaces.integr8.Integr8Exception
Specified by:
newIntegr8GeneInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.integr8.Integr8Exception

copyIntegr8GeneInstance

public uk.ac.ebi.interfaces.integr8.Gene copyIntegr8GeneInstance(uk.ac.ebi.interfaces.sptr.Gene gene)
                                                          throws uk.ac.ebi.interfaces.integr8.Integr8Exception
Specified by:
copyIntegr8GeneInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.integr8.Integr8Exception

copyIntegr8GeneInstance

public uk.ac.ebi.interfaces.integr8.Gene copyIntegr8GeneInstance(uk.ac.ebi.interfaces.integr8.Gene gene)
                                                          throws uk.ac.ebi.interfaces.integr8.Integr8Exception
Specified by:
copyIntegr8GeneInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.integr8.Integr8Exception

newProteomeEntryInstance

public uk.ac.ebi.interfaces.integr8.ProteomeEntry newProteomeEntryInstance()
                                                                    throws uk.ac.ebi.interfaces.integr8.Integr8Exception
Specified by:
newProteomeEntryInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.integr8.Integr8Exception

newAbsorptionInstance

public uk.ac.ebi.interfaces.sptr.Absorption newAbsorptionInstance()
                                                           throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
newAbsorptionInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

copyAbsorptionInstance

public uk.ac.ebi.interfaces.sptr.Absorption copyAbsorptionInstance(uk.ac.ebi.interfaces.sptr.Absorption absorption)
                                                            throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
copyAbsorptionInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

newKineticParameterInstance

public uk.ac.ebi.interfaces.sptr.KineticParameter newKineticParameterInstance()
                                                                       throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
newKineticParameterInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

copyKineticParameterInstance

public uk.ac.ebi.interfaces.sptr.KineticParameter copyKineticParameterInstance(uk.ac.ebi.interfaces.sptr.KineticParameter kineticParameter)
                                                                        throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
copyKineticParameterInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

newMaximumVelocityInstance

public uk.ac.ebi.interfaces.sptr.MaximumVelocity newMaximumVelocityInstance()
                                                                     throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
newMaximumVelocityInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

copyMaximumVelocityInstance

public uk.ac.ebi.interfaces.sptr.MaximumVelocity copyMaximumVelocityInstance(uk.ac.ebi.interfaces.sptr.MaximumVelocity maximumVelocity)
                                                                      throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
copyMaximumVelocityInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

newMichaelisConstantInstance

public uk.ac.ebi.interfaces.sptr.MichaelisConstant newMichaelisConstantInstance()
                                                                         throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
newMichaelisConstantInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

copyMichaelisConstantInstance

public uk.ac.ebi.interfaces.sptr.MichaelisConstant copyMichaelisConstantInstance(uk.ac.ebi.interfaces.sptr.MichaelisConstant michaelisConstant)
                                                                          throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
copyMichaelisConstantInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

newMassSpectrometryRangeInstance

public uk.ac.ebi.interfaces.sptr.MassSpectrometryRange newMassSpectrometryRangeInstance()
                                                                                 throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
newMassSpectrometryRangeInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException

copyMassSpectrometryRangeInstance

public uk.ac.ebi.interfaces.sptr.MassSpectrometryRange copyMassSpectrometryRangeInstance(uk.ac.ebi.interfaces.sptr.MassSpectrometryRange massSpectrometryRange)
                                                                                  throws uk.ac.ebi.interfaces.sptr.SPTRException
Specified by:
copyMassSpectrometryRangeInstance in class uk.ac.ebi.interfaces.Factory
Throws:
uk.ac.ebi.interfaces.sptr.SPTRException
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