uk.ac.ebi.intenz.tools.importer
Class KrakenLinkImporter

java.lang.Object
  uk.ac.ebi.intenz.tools.importer.Importer
      uk.ac.ebi.intenz.tools.importer.KrakenLinkImporter

public class KrakenLinkImporter
extends Importer

Field Summary

Fields inherited from class uk.ac.ebi.intenz.tools.importer.Importer

importerProps

Constructor Summary

protected

KrakenLinkImporter()

Method Summary

protected void	destroy() Method used to close all loose ends.
protected SortedSet<EnzymeLink>	getKrakenLinks(String ec)
protected void	importData() Used to import the data from the source
protected void	loadData() Method called after the data has been imported succesfully.
protected void	setup() Used to setup all network connections.
protected void	setupKraken()

Methods inherited from class uk.ac.ebi.intenz.tools.importer.Importer

doImport

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

KrakenLinkImporter

protected KrakenLinkImporter()
                      throws IOException

Throws:

IOException

Method Detail

setup

protected void setup()
              throws Exception

Description copied from class: Importer

Used to setup all network connections.

Specified by:

setup in class Importer

Throws:

Exception

setupKraken

protected void setupKraken()

importData

protected void importData()
                   throws Exception

Description copied from class: Importer

Used to import the data from the source

Specified by:

importData in class Importer

Throws:

Exception

getKrakenLinks

protected SortedSet<EnzymeLink> getKrakenLinks(String ec)

loadData

protected void loadData()
                 throws Exception

Description copied from class: Importer

Method called after the data has been imported succesfully.

Specified by:

loadData in class Importer

Throws:

Exception

destroy

protected void destroy()

Description copied from class: Importer

Method used to close all loose ends.

Specified by:

destroy in class Importer