Uses of Class
uk.ac.ebi.intenz.domain.reference.Reference

Packages that use Reference

uk.ac.ebi.intenz.domain.enzyme	The core enzyme information is held in these classes.
uk.ac.ebi.intenz.domain.reference	Classes for storing publication data.
uk.ac.ebi.intenz.mapper	O/R mapping layer classes.
uk.ac.ebi.intenz.tools.release.helper

Uses of Reference in uk.ac.ebi.intenz.domain.enzyme

Methods in uk.ac.ebi.intenz.domain.enzyme that return types with arguments of type Reference

List<Reference>

EnzymeEntry.getReferences()

Methods in uk.ac.ebi.intenz.domain.enzyme with parameters of type Reference

void	EnzymeEntry.addReference(Reference reference) Adds a reference to the list of references.
void	EnzymeEntry.removeReference(Reference reference) Removes a reference from the list of references.

Method parameters in uk.ac.ebi.intenz.domain.enzyme with type arguments of type Reference

void	EnzymeEntry.setReferences(List<Reference> references) Sets the list of refernces.

Uses of Reference in uk.ac.ebi.intenz.domain.reference

Subclasses of Reference in uk.ac.ebi.intenz.domain.reference

class	Book This class stores additional information about a book.
class	Journal This class stores additional information about a journal.
class	Patent This class stores additional information about patents.

Uses of Reference in uk.ac.ebi.intenz.mapper

Methods in uk.ac.ebi.intenz.mapper that return types with arguments of type Reference

List<Reference>

EnzymeReferenceMapper.find(Long enzymeId, Connection con) Tries to find comment information about an enzyme.

Methods in uk.ac.ebi.intenz.mapper with parameters of type Reference

void	EnzymeReferenceMapper.insert(Reference reference, Long enzymeId, Status status, Connection con)
void	EnzymeReferenceMapper.update(Reference reference, Long enzymeId, Status status, Connection con)

Method parameters in uk.ac.ebi.intenz.mapper with type arguments of type Reference

void	EnzymeReferenceMapper.insert(List<Reference> references, Long enzymeId, Status status, Connection con) Stores the given list of references into the database.
void	EnzymeReferenceMapper.reload(List<Reference> references, Long enzymeId, Status status, Connection con)
void	EnzymeReferenceMapper.update(List<Reference> references, Long enzymeId, Status status, Connection con)

Uses of Reference in uk.ac.ebi.intenz.tools.release.helper

Methods in uk.ac.ebi.intenz.tools.release.helper with parameters of type Reference

static String

EnzymeReferenceHelper.referenceToIntEnzTextXML(Reference reference, int number, uk.ac.ebi.xchars.SpecialCharacters encoding) Used to transform the reference object into the IntEnz text XML used in the search engine.