Uses of Class
uk.ac.ebi.intenz.domain.enzyme.EnzymeName

Packages that use EnzymeName

uk.ac.ebi.intenz.domain.enzyme	The core enzyme information is held in these classes.
uk.ac.ebi.intenz.mapper	O/R mapping layer classes.
uk.ac.ebi.intenz.webapp.utilities

Uses of EnzymeName in uk.ac.ebi.intenz.domain.enzyme

Fields in uk.ac.ebi.intenz.domain.enzyme declared as EnzymeName

static EnzymeName

EnzymeName.UNDEF

Methods in uk.ac.ebi.intenz.domain.enzyme that return EnzymeName

EnzymeName	EnzymeEntry.getCommonName()
EnzymeName	EnzymeEntry.getCommonName(EnzymeViewConstant view) Returns the first common name which view value matches the parameter's view value.
static EnzymeName	EnzymeName.getCommonNameInstance(String name, EnzymeSourceConstant source, EnzymeViewConstant view) Returns an EnzymeName instance representing an enzyme's common (recommended) name.
static EnzymeName	EnzymeName.getSynonymInstance(String name, EnzymeNameQualifierConstant qualifier, EnzymeSourceConstant source, EnzymeViewConstant view) Returns an EnzymeName instance representing an enzyme's synonym.
EnzymeName	EnzymeEntry.getSystematicName()
static EnzymeName	EnzymeName.getSystematicNameInstance(String name, EnzymeSourceConstant source, EnzymeViewConstant view) Returns an EnzymeName instance representing an enzyme's systematic name.
static EnzymeName	EnzymeName.valueOf(String name, EnzymeNameTypeConstant type, EnzymeNameQualifierConstant qualifier, EnzymeSourceConstant source, EnzymeViewConstant view)

Methods in uk.ac.ebi.intenz.domain.enzyme that return types with arguments of type EnzymeName

List<EnzymeName>	EnzymeEntry.getCommonNames()
List<EnzymeName>	EnzymeEntry.getSynonyms()
List<EnzymeName>	EnzymeEntry.getSynonyms(EnzymeViewConstant view) Deprecated. use EnzymeEntry.getSynonyms(String) or EnzymeEntry.getSynonyms(View) instead.
List<EnzymeName>	EnzymeEntry.getSynonyms(String view)
List<EnzymeName>	EnzymeEntry.getSynonyms(View theView)

Methods in uk.ac.ebi.intenz.domain.enzyme with parameters of type EnzymeName

void	EnzymeEntry.addCommonName(EnzymeName commonName) Adds a common name to the list of common names.
void	EnzymeEntry.addSynonym(EnzymeName synonym) Adds a synonsm to the list of synonyms.
int	EnzymeName.compareTo(EnzymeName name)
void	EnzymeEntry.setSystematicName(EnzymeName systematicName) Sets the systematic name of the enzyme.

Method parameters in uk.ac.ebi.intenz.domain.enzyme with type arguments of type EnzymeName

void	EnzymeEntry.setCommonNames(List<EnzymeName> commonNames) Sets the list of common names.
void	EnzymeEntry.setSynonyms(List<EnzymeName> synonyms) Sets the list of synonyms.

Uses of EnzymeName in uk.ac.ebi.intenz.mapper

Methods in uk.ac.ebi.intenz.mapper that return EnzymeName

EnzymeName

EnzymeNameMapper.findSystematicName(Long enzymeId, Connection con) Finds only the systematic name of an entry.

Methods in uk.ac.ebi.intenz.mapper that return types with arguments of type EnzymeName

List<EnzymeName>	EnzymeNameMapper.exportSibNames(Long enzymeId, Connection con) Exports all names which are displayed in the ENZYME view.
List<EnzymeName>	EnzymeNameMapper.find(Long enzymeId, Connection con) Tries to find name information about an enzyme.
List<EnzymeName>	EnzymeNameMapper.findCommonNames(Long enzymeId, Connection con) Finds only the common name of an entry.

Methods in uk.ac.ebi.intenz.mapper with parameters of type EnzymeName

void	EnzymeNameMapper.insert(EnzymeName enzymeName, Long enzymeId, Status status, int orderIn, Connection con)
void	EnzymeNameMapper.update(EnzymeName name, Long enzymeId, Status status, int orderIn, Connection con)

Method parameters in uk.ac.ebi.intenz.mapper with type arguments of type EnzymeName

void	EnzymeNameMapper.insertNames(List<EnzymeName> names, Long enzymeId, Status status, Connection con)
void	EnzymeNameMapper.reload(List<EnzymeName> names, Long enzymeId, EnzymeNameTypeConstant type, Status status, Connection con)

Uses of EnzymeName in uk.ac.ebi.intenz.webapp.utilities

Methods in uk.ac.ebi.intenz.webapp.utilities that return EnzymeName

EnzymeName

UnitOfWork.getEnzymeNameObject(EnzymeNameDTO enzymeNameDTO) Creates a EnzymeName object using a EnzymeNameDTO object stored in the enzyme DTO.