Uses of Class
uk.ac.ebi.intenz.domain.enzyme.EnzymeCommissionNumber

Packages that use EnzymeCommissionNumber

uk.ac.ebi.intenz.domain.enzyme	The core enzyme information is held in these classes.
uk.ac.ebi.intenz.mapper	O/R mapping layer classes.
uk.ac.ebi.intenz.webapp.controller	All front controller related classes are stored here.

Uses of EnzymeCommissionNumber in uk.ac.ebi.intenz.domain.enzyme

Fields in uk.ac.ebi.intenz.domain.enzyme declared as EnzymeCommissionNumber

static EnzymeCommissionNumber

EnzymeCommissionNumber.UNDEF Constant for an undefined EC which can be used for new enzyme suggestions where the EC number is not known (yet).

Methods in uk.ac.ebi.intenz.domain.enzyme that return EnzymeCommissionNumber

static EnzymeCommissionNumber	EnzymeCommissionNumber.copy(EnzymeCommissionNumber ecToCopy) Creates a copy of the given EnzymeCommissionNumber.
EnzymeCommissionNumber	EnzymeSubSubclass.getEc()
EnzymeCommissionNumber	EnzymeSubclass.getEc()
EnzymeCommissionNumber	EnzymeEntry.getEc()
EnzymeCommissionNumber	EnzymeClass.getEc() Returns the hash code of this object.
static EnzymeCommissionNumber	EnzymeCommissionNumber.valueOf(int ec1) Returns an EnzymeCommissionNumber instance defined by the given integer.
static EnzymeCommissionNumber	EnzymeCommissionNumber.valueOf(int ec1, int ec2) Returns an EnzymeCommissionNumber instance defined by the given integers.
static EnzymeCommissionNumber	EnzymeCommissionNumber.valueOf(int ec1, int ec2, int ec3) Returns an EnzymeCommissionNumber instance defined by the given integers.
static EnzymeCommissionNumber	EnzymeCommissionNumber.valueOf(int ec1, int ec2, int ec3, int ec4) Returns an EnzymeCommissionNumber instance defined by the given integers.
static EnzymeCommissionNumber	EnzymeCommissionNumber.valueOf(int ec1, int ec2, int ec3, int ec4, boolean preliminary) Constructor allowing preliminary EC numbers.
static EnzymeCommissionNumber	EnzymeCommissionNumber.valueOf(String ecString) Returns an EnzymeCommissionNumber instance defined by the given string.

Methods in uk.ac.ebi.intenz.domain.enzyme with parameters of type EnzymeCommissionNumber

int	EnzymeCommissionNumber.compareTo(EnzymeCommissionNumber ec) Compares this EC number with another one.
static EnzymeCommissionNumber	EnzymeCommissionNumber.copy(EnzymeCommissionNumber ecToCopy) Creates a copy of the given EnzymeCommissionNumber.
void	EnzymeEntry.setEc(EnzymeCommissionNumber ec) Sets the EC number.
static EnzymeClass	EnzymeClass.valueOf(EnzymeCommissionNumber ec, String name, String description, List<EnzymeSubclass> subclasses) Returns an EnzymeClass instance.

Constructors in uk.ac.ebi.intenz.domain.enzyme with parameters of type EnzymeCommissionNumber

EnzymeSubclass(EnzymeCommissionNumber ec, String className, String name, String description, List<EnzymeSubSubclass> subSubclasses)
Returns an EnzymeSubclass instance.

EnzymeSubSubclass(EnzymeCommissionNumber ec, String className, String subclassName, String name, String description, List<EnzymeEntry> entries)
Returns an EnzymeSubSubclass instance.

Uses of EnzymeCommissionNumber in uk.ac.ebi.intenz.mapper

Methods in uk.ac.ebi.intenz.mapper that return EnzymeCommissionNumber

EnzymeCommissionNumber

EnzymeEntryMapper.findEC(String id, Connection con) Returns the EC number of the given enzyme ID.

Methods in uk.ac.ebi.intenz.mapper with parameters of type EnzymeCommissionNumber

static boolean	EnzymeEntryMapper.ecExists(EnzymeCommissionNumber ec, Connection con) Checks whether a given EC number already exists in the database.
void	EnzymeEntryMapper.insert(Long enzymeId, EnzymeCommissionNumber ec, Status status, EnzymeSourceConstant source, String note, String historyLine, boolean isActive, Connection con) Inserts the core data of a new enzyme entry.
void	EnzymeSubSubclassMapper.insertSubSubclass(EnzymeCommissionNumber ec, String name, String description, Connection con) Creates a new row in the SUBSUBCLASSES table.
void	EnzymeEntryMapper.update(Long enzymeId, EnzymeCommissionNumber ec, Status status, EnzymeSourceConstant source, String note, String historyLine, boolean active, Connection con) Updates the core data of an enzyme stored in the table ENZYMES.
void	EnzymeEntryMapper.updateEc(Long enzymeId, EnzymeCommissionNumber newEc, Connection con) Updates the EC of the given enzyme.

Uses of EnzymeCommissionNumber in uk.ac.ebi.intenz.webapp.controller

Methods in uk.ac.ebi.intenz.webapp.controller that return EnzymeCommissionNumber

EnzymeCommissionNumber

SearchCommand.Result.getEc()

Methods in uk.ac.ebi.intenz.webapp.controller with parameters of type EnzymeCommissionNumber

protected EnzymeClass	SearchECCommand.findEnzymeClass(EnzymeCommissionNumber ec) Calls the according find() method and handles empty results and SQL exceptions.
protected EnzymeEntry	SearchECCommand.findEnzymeEntry(EnzymeCommissionNumber ec, Status status) Calls the according find() method and handles empty results and SQL exceptions.
protected EnzymeSubclass	SearchECCommand.findEnzymeSubclass(EnzymeCommissionNumber ec) Calls the according find() method and handles empty results and SQL exceptions.
protected EnzymeSubSubclass	SearchECCommand.findEnzymeSubSubclass(EnzymeCommissionNumber ec) Calls the according find() method and handles empty results and SQL exceptions.

Constructors in uk.ac.ebi.intenz.webapp.controller with parameters of type EnzymeCommissionNumber

SearchECCommand.EnzymeEntryCacheKey(EnzymeCommissionNumber ec, Status status)