Uses of Class
uk.ac.ebi.intenz.domain.constants.EnzymeViewConstant

Packages that use EnzymeViewConstant

uk.ac.ebi.intenz.domain.constants	The most commonly used constants are implemented as typesafe enums.
uk.ac.ebi.intenz.domain.enzyme	The core enzyme information is held in these classes.
uk.ac.ebi.intenz.domain.reference	Classes for storing publication data.
uk.ac.ebi.intenz.mapper	O/R mapping layer classes.
uk.ac.ebi.intenz.tools.release.helper
uk.ac.ebi.intenz.webapp.helper

Uses of EnzymeViewConstant in uk.ac.ebi.intenz.domain.constants

Fields in uk.ac.ebi.intenz.domain.constants declared as EnzymeViewConstant

static EnzymeViewConstant	EnzymeViewConstant.INTENZ Deprecated.
static EnzymeViewConstant	EnzymeViewConstant.IUBMB Deprecated.
static EnzymeViewConstant	EnzymeViewConstant.IUBMB_INTENZ Deprecated.
static EnzymeViewConstant	EnzymeViewConstant.IUBMB_SIB Deprecated.
static EnzymeViewConstant	EnzymeViewConstant.SIB Deprecated.
static EnzymeViewConstant	EnzymeViewConstant.SIB_INTENZ Deprecated.
static EnzymeViewConstant	EnzymeViewConstant.UNDEF Deprecated.

Fields in uk.ac.ebi.intenz.domain.constants with type parameters of type EnzymeViewConstant

static List<EnzymeViewConstant>

EnzymeViewConstant.VIEW_CONSTANTS Deprecated.

Methods in uk.ac.ebi.intenz.domain.constants that return EnzymeViewConstant

static EnzymeViewConstant

EnzymeViewConstant.valueOf(String viewCode) Deprecated. Returns the corresponding instance of the given view code.

Methods in uk.ac.ebi.intenz.domain.constants with parameters of type EnzymeViewConstant

static boolean

EnzymeViewConstant.isInView(EnzymeViewConstant theView, Object o) Deprecated.

Uses of EnzymeViewConstant in uk.ac.ebi.intenz.domain.enzyme

Methods in uk.ac.ebi.intenz.domain.enzyme that return EnzymeViewConstant

EnzymeViewConstant	EnzymaticReactions.getReactionView(int i)
EnzymeViewConstant	Viewable.getView()
EnzymeViewConstant	EnzymeName.getView() Returns the name's view code.
EnzymeViewConstant	EnzymeLink.getView()
EnzymeViewConstant	EnzymeComment.getView()
EnzymeViewConstant	EnzymaticReactions.VisibleReaction.getView()
EnzymeViewConstant	Cofactor.getView()

Methods in uk.ac.ebi.intenz.domain.enzyme with parameters of type EnzymeViewConstant

List<EnzymeComment>	EnzymeEntry.getComments(EnzymeViewConstant view) Deprecated. use EnzymeEntry.getComments(String) instead
EnzymeName	EnzymeEntry.getCommonName(EnzymeViewConstant view) Returns the first common name which view value matches the parameter's view value.
static EnzymeName	EnzymeName.getCommonNameInstance(String name, EnzymeSourceConstant source, EnzymeViewConstant view) Returns an EnzymeName instance representing an enzyme's common (recommended) name.
SortedSet<EnzymeLink>	EnzymeEntry.getLinks(EnzymeViewConstant view) Deprecated. use EnzymeEntry.getLinks(String) instead
List<uk.ac.ebi.rhea.domain.Reaction>	EnzymeEntry.getReactions(EnzymeViewConstant view) Deprecated. use EnzymeEntry.getReactions(View) or EnzymeEntry.getReactions(String) instead.
static EnzymeName	EnzymeName.getSynonymInstance(String name, EnzymeNameQualifierConstant qualifier, EnzymeSourceConstant source, EnzymeViewConstant view) Returns an EnzymeName instance representing an enzyme's synonym.
List<EnzymeName>	EnzymeEntry.getSynonyms(EnzymeViewConstant view) Deprecated. use EnzymeEntry.getSynonyms(String) or EnzymeEntry.getSynonyms(View) instead.
static EnzymeName	EnzymeName.getSystematicNameInstance(String name, EnzymeSourceConstant source, EnzymeViewConstant view) Returns an EnzymeName instance representing an enzyme's systematic name.
static Cofactor	Cofactor.valueOf(uk.ac.ebi.rhea.domain.Compound compound, EnzymeSourceConstant source, EnzymeViewConstant view) Builds a cofactor from the passed parameters.
static EnzymeName	EnzymeName.valueOf(String name, EnzymeNameTypeConstant type, EnzymeNameQualifierConstant qualifier, EnzymeSourceConstant source, EnzymeViewConstant view)
static EnzymeLink	EnzymeLink.valueOf(XrefDatabaseConstant xrefDatabaseConstant, String specificUrl, String accession, String name, EnzymeSourceConstant source, EnzymeViewConstant view) Returns an EnzymeLink instance.
static EnzymeLink	EnzymeLink.valueOf(XrefDatabaseConstant xrefDatabaseConstant, String specificUrl, String accession, String name, EnzymeSourceConstant source, EnzymeViewConstant view, String dataComment) Returns a commented EnzymeLink instance.

Constructors in uk.ac.ebi.intenz.domain.enzyme with parameters of type EnzymeViewConstant

Cofactor(String cofactorValue, EnzymeSourceConstant source, EnzymeViewConstant view)
Deprecated. use the valueOf method instead to call the private constructor

EnzymeComment(String commentText, EnzymeSourceConstant source, EnzymeViewConstant view)
Returns a EnzymeComment instance.

Uses of EnzymeViewConstant in uk.ac.ebi.intenz.domain.reference

Methods in uk.ac.ebi.intenz.domain.reference that return EnzymeViewConstant

EnzymeViewConstant

Reference.getView()

Constructors in uk.ac.ebi.intenz.domain.reference with parameters of type EnzymeViewConstant

Book(Long id, String authors, String title, String year, String firstPage, String lastPage, String pubName, String edition, String editor, String volume, String publisher, String publisherPlace, EnzymeViewConstant view, EnzymeSourceConstant source)
Returns a Book instance.

Journal(Long id, String authors, String title, String year, String pubName, String firstPage, String lastPage, String volume, String pubMedId, String medlineId, EnzymeViewConstant view, EnzymeSourceConstant source)
Returns a Journal instance.

Patent(Long id, String authors, String title, String year, String patentNumber, EnzymeViewConstant view, EnzymeSourceConstant source)
Returns a Patent instance.

Uses of EnzymeViewConstant in uk.ac.ebi.intenz.mapper

Methods in uk.ac.ebi.intenz.mapper with parameters of type EnzymeViewConstant

void	EnzymeReactionMapper.insertMapping(Long enzymeId, Long reactionId, EnzymeViewConstant view, boolean iubmb, int orderIn, Connection con) Inserts a mapping reaction-enzyme into the database.

Uses of EnzymeViewConstant in uk.ac.ebi.intenz.tools.release.helper

Methods in uk.ac.ebi.intenz.tools.release.helper with parameters of type EnzymeViewConstant

static String

EnzymeEntryHelper.toXML(EnzymeEntry enzymeEntry, uk.ac.ebi.xchars.SpecialCharacters encoding, EnzymeViewConstant view, boolean intenzTextXML) Deprecated.

Uses of EnzymeViewConstant in uk.ac.ebi.intenz.webapp.helper

Methods in uk.ac.ebi.intenz.webapp.helper with parameters of type EnzymeViewConstant

static String

EnzymeEntryHelper.toHTML(EnzymeEntry enzymeEntry, uk.ac.ebi.xchars.SpecialCharacters encoding, uk.ac.ebi.xchars.domain.EncodingType encodingType, EnzymeViewConstant view) Deprecated.