Uses of Class
uk.ac.ebi.intenz.domain.constants.EnzymeSourceConstant

Packages that use EnzymeSourceConstant

uk.ac.ebi.intenz.domain.constants	The most commonly used constants are implemented as typesafe enums.
uk.ac.ebi.intenz.domain.enzyme	The core enzyme information is held in these classes.
uk.ac.ebi.intenz.domain.reference	Classes for storing publication data.
uk.ac.ebi.intenz.mapper	O/R mapping layer classes.

Uses of EnzymeSourceConstant in uk.ac.ebi.intenz.domain.constants

Fields in uk.ac.ebi.intenz.domain.constants declared as EnzymeSourceConstant

static EnzymeSourceConstant	EnzymeSourceConstant.BRENDA
static EnzymeSourceConstant	EnzymeSourceConstant.INTENZ
static EnzymeSourceConstant	EnzymeSourceConstant.IUBMB
static EnzymeSourceConstant	EnzymeSourceConstant.SIB
static EnzymeSourceConstant	EnzymeSourceConstant.UNDEF

Methods in uk.ac.ebi.intenz.domain.constants that return EnzymeSourceConstant

static EnzymeSourceConstant

EnzymeSourceConstant.valueOf(String sourceCode) Returns the corresponding instance of the given source code.

Uses of EnzymeSourceConstant in uk.ac.ebi.intenz.domain.enzyme

Methods in uk.ac.ebi.intenz.domain.enzyme that return EnzymeSourceConstant

EnzymeSourceConstant	EnzymeName.getSource() Returns the name's source.
EnzymeSourceConstant	EnzymeLink.getSource()
EnzymeSourceConstant	EnzymeEntry.getSource()
EnzymeSourceConstant	EnzymeComment.getSource()
EnzymeSourceConstant	Cofactor.getSource()

Methods in uk.ac.ebi.intenz.domain.enzyme with parameters of type EnzymeSourceConstant

static EnzymeName	EnzymeName.getCommonNameInstance(String name, EnzymeSourceConstant source, EnzymeViewConstant view) Returns an EnzymeName instance representing an enzyme's common (recommended) name.
static EnzymeName	EnzymeName.getSynonymInstance(String name, EnzymeNameQualifierConstant qualifier, EnzymeSourceConstant source, EnzymeViewConstant view) Returns an EnzymeName instance representing an enzyme's synonym.
static EnzymeName	EnzymeName.getSystematicNameInstance(String name, EnzymeSourceConstant source, EnzymeViewConstant view) Returns an EnzymeName instance representing an enzyme's systematic name.
void	EnzymeEntry.setSource(EnzymeSourceConstant source) Sets the enzyme's source.
static Cofactor	Cofactor.valueOf(uk.ac.ebi.rhea.domain.Compound compound, EnzymeSourceConstant source, EnzymeViewConstant view) Builds a cofactor from the passed parameters.
static EnzymeName	EnzymeName.valueOf(String name, EnzymeNameTypeConstant type, EnzymeNameQualifierConstant qualifier, EnzymeSourceConstant source, EnzymeViewConstant view)
static EnzymeLink	EnzymeLink.valueOf(XrefDatabaseConstant xrefDatabaseConstant, String specificUrl, String accession, String name, EnzymeSourceConstant source, EnzymeViewConstant view) Returns an EnzymeLink instance.
static EnzymeLink	EnzymeLink.valueOf(XrefDatabaseConstant xrefDatabaseConstant, String specificUrl, String accession, String name, EnzymeSourceConstant source, EnzymeViewConstant view, String dataComment) Returns a commented EnzymeLink instance.

Constructors in uk.ac.ebi.intenz.domain.enzyme with parameters of type EnzymeSourceConstant

Cofactor(String cofactorValue, EnzymeSourceConstant source, EnzymeViewConstant view)
Deprecated. use the valueOf method instead to call the private constructor

EnzymeComment(String commentText, EnzymeSourceConstant source, EnzymeViewConstant view)
Returns a EnzymeComment instance.

Uses of EnzymeSourceConstant in uk.ac.ebi.intenz.domain.reference

Methods in uk.ac.ebi.intenz.domain.reference that return EnzymeSourceConstant

EnzymeSourceConstant

Reference.getSource()

Constructors in uk.ac.ebi.intenz.domain.reference with parameters of type EnzymeSourceConstant

Book(Long id, String authors, String title, String year, String firstPage, String lastPage, String pubName, String edition, String editor, String volume, String publisher, String publisherPlace, EnzymeViewConstant view, EnzymeSourceConstant source)
Returns a Book instance.

Journal(Long id, String authors, String title, String year, String pubName, String firstPage, String lastPage, String volume, String pubMedId, String medlineId, EnzymeViewConstant view, EnzymeSourceConstant source)
Returns a Journal instance.

Patent(Long id, String authors, String title, String year, String patentNumber, EnzymeViewConstant view, EnzymeSourceConstant source)
Returns a Patent instance.

Uses of EnzymeSourceConstant in uk.ac.ebi.intenz.mapper

Methods in uk.ac.ebi.intenz.mapper with parameters of type EnzymeSourceConstant

void	EnzymeEntryMapper.insert(Long enzymeId, EnzymeCommissionNumber ec, Status status, EnzymeSourceConstant source, String note, String historyLine, boolean isActive, Connection con) Inserts the core data of a new enzyme entry.
void	EnzymeEntryMapper.update(Long enzymeId, EnzymeCommissionNumber ec, Status status, EnzymeSourceConstant source, String note, String historyLine, boolean active, Connection con) Updates the core data of an enzyme stored in the table ENZYMES.