package uk.ac.ebi.intenz.tools.sib.sptr_enzyme;
   
   import uk.ac.ebi.interfaces.enzyme.EnzymeEntry;
   import uk.ac.ebi.interfaces.sptr.SPTRCrossReference;
   import uk.ac.ebi.interfaces.sptr.SPTRException;
   
   import java.io.Serializable;
   import java.util.ArrayList;
   
  /**
   * This class is a simple implementation of the {@link EnzymeEntry EnzymeEntry} interface.
   *
   * @author Michael Darsow
   * @version preliminary - $Revision: 1.2 $ $Date: 2008/01/28 11:43:22 $
   */
  public class EnzymeEntryImpl implements EnzymeEntry, Serializable {
    private int id;
    private String ec, commonName, cofactors, comment;
    private ArrayList synonyms, reactions, xrefs;
    private boolean isTransferredOrDeleted;
  
    public EnzymeEntryImpl() {
      id = 0;
      ec = "";
      commonName = "";
      cofactors = "";
      comment = "";
      synonyms = new ArrayList();
      reactions = new ArrayList();
      xrefs = new ArrayList();
      isTransferredOrDeleted = false;
    }
  
    public int getId() {
      return id;
    }
  
    public void setId(int id) {
      this.id = id;
    }
  
    public void setEC(String s) throws SPTRException, UnsupportedOperationException {
      ec = s;
    }
  
    public String getEC() throws SPTRException, UnsupportedOperationException {
      return ec;
    }
  
    public void setCommonName(String s) throws SPTRException, UnsupportedOperationException {
      commonName = s;
    }
  
    public String getCommonName() throws SPTRException, UnsupportedOperationException {
      return commonName;
    }
  
    public void addSynonym(String s) throws SPTRException, UnsupportedOperationException {
      synonyms.add(s);
    }
  
    public boolean removeSynonym(String s) throws SPTRException, UnsupportedOperationException {
      return synonyms.remove(s);
    }
  
    public String[] getSynonyms() throws SPTRException, UnsupportedOperationException {
      String[] synonymsArray = new String[synonyms.size()];
      for (int iii = 0; iii < synonyms.size(); iii++) {
        synonymsArray[iii] = (String) synonyms.get(iii);
      }
      return synonymsArray;
    }
  
    public void setSynonyms(String[] synonyms) throws SPTRException, UnsupportedOperationException {
      for (int iii = 0; iii < synonyms.length; iii++) {
        addSynonym(synonyms[iii]);
      }
    }
  
    public void addReaction(String s) throws SPTRException, UnsupportedOperationException {
      reactions.add(s);
    }
  
    public boolean removeReaction(String s) throws SPTRException, UnsupportedOperationException {
      return reactions.remove(s);
    }
  
    public String[] getReactions() throws SPTRException, UnsupportedOperationException {
      String[] reactionsArray = new String[reactions.size()];
      for (int iii = 0; iii < reactions.size(); iii++) {
        reactionsArray[iii] = (String) reactions.get(iii);
      }
      return reactionsArray;
    }
  
    public void setReactions(String[] reactions) throws SPTRException, UnsupportedOperationException {
      for (int iii = 0; iii < reactions.length; iii++) {
        addReaction(reactions[iii]);
      }
   }
 
   public void setCofactors(String s) throws SPTRException, UnsupportedOperationException {
     cofactors = s;
   }
 
   public String getCofactors() throws SPTRException, UnsupportedOperationException {
     return cofactors;
   }
 
   public void setComment(String s) throws SPTRException, UnsupportedOperationException {
     comment = s;
   }
 
   public String getComment() throws SPTRException, UnsupportedOperationException {
     return comment;
   }
 
   public void addCrossReference(SPTRCrossReference sptrCrossReference) throws SPTRException, UnsupportedOperationException {
     xrefs.add(sptrCrossReference);
   }
 
   public void addCrossReferences(SPTRCrossReference[] sptrCrossReference) throws SPTRException, UnsupportedOperationException {
     for (int iii = 0; iii < sptrCrossReference.length; iii++) {
       addCrossReference(sptrCrossReference[iii]);
     }
   }
 
   public boolean removeCrossReference(SPTRCrossReference sptrCrossReference) throws SPTRException, UnsupportedOperationException {
     return xrefs.remove(sptrCrossReference);
   }
 
   public SPTRCrossReference[] getCrossReferences() throws SPTRException, UnsupportedOperationException {
     SPTRCrossReference[] xrefsArray = new SPTRCrossReference[this.xrefs.size()];
     for (int iii = 0; iii < this.xrefs.size(); iii++) {
       xrefsArray[iii] = (SPTRCrossReference) this.xrefs.get(iii);
     }
     return xrefsArray;
   }
 
   public void setCrossReferences(SPTRCrossReference[] xrefs) throws SPTRException, UnsupportedOperationException {
     for (int iii = 0; iii < xrefs.length; iii++) {
       addCrossReference(xrefs[iii]);
     }
   }
 
   public boolean isTransferredOrDeleted() {
     return isTransferredOrDeleted;
   }
 
   public void setTransferredOrDeleted(boolean transferredOrDeleted) {
     isTransferredOrDeleted = transferredOrDeleted;
   }
 }