uk.ac.ebi.intenz.tools.sib.sptr_enzyme

Class EnzymeEntryImpl

java.lang.Object

uk.ac.ebi.intenz.tools.sib.sptr_enzyme.EnzymeEntryImpl

All Implemented Interfaces:

Serializable, uk.ac.ebi.interfaces.enzyme.EnzymeEntry

public class EnzymeEntryImpl
extends Object
implements uk.ac.ebi.interfaces.enzyme.EnzymeEntry, Serializable

This class is a simple implementation of the EnzymeEntry interface.

Version:

preliminary - $Revision: 1.2 $ $Date: 2008/01/28 11:43:22 $

Author:

Michael Darsow

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
EnzymeEntryImpl()

Method Summary

Methods

Modifier and Type	Method and Description
void	addCrossReference(uk.ac.ebi.interfaces.sptr.SPTRCrossReference sptrCrossReference)
void	addCrossReferences(uk.ac.ebi.interfaces.sptr.SPTRCrossReference[] sptrCrossReference)
void	addReaction(String s)
void	addSynonym(String s)
String	getCofactors()
String	getComment()
String	getCommonName()
uk.ac.ebi.interfaces.sptr.SPTRCrossReference[]	getCrossReferences()
String	getEC()
int	getId()
String[]	getReactions()
String[]	getSynonyms()
boolean	isTransferredOrDeleted()
boolean	removeCrossReference(uk.ac.ebi.interfaces.sptr.SPTRCrossReference sptrCrossReference)
boolean	removeReaction(String s)
boolean	removeSynonym(String s)
void	setCofactors(String s)
void	setComment(String s)
void	setCommonName(String s)
void	setCrossReferences(uk.ac.ebi.interfaces.sptr.SPTRCrossReference[] xrefs)
void	setEC(String s)
void	setId(int id)
void	setReactions(String[] reactions)
void	setSynonyms(String[] synonyms)
void	setTransferredOrDeleted(boolean transferredOrDeleted)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EnzymeEntryImpl

public EnzymeEntryImpl()

Method Detail

getId

public int getId()

setId

public void setId(int id)

setEC

public void setEC(String s)
           throws uk.ac.ebi.interfaces.sptr.SPTRException,
                  UnsupportedOperationException

Specified by:

setEC in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

getEC

public String getEC()
             throws uk.ac.ebi.interfaces.sptr.SPTRException,
                    UnsupportedOperationException

Specified by:

getEC in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

setCommonName

public void setCommonName(String s)
                   throws uk.ac.ebi.interfaces.sptr.SPTRException,
                          UnsupportedOperationException

Specified by:

setCommonName in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

getCommonName

public String getCommonName()
                     throws uk.ac.ebi.interfaces.sptr.SPTRException,
                            UnsupportedOperationException

Specified by:

getCommonName in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

addSynonym

public void addSynonym(String s)
                throws uk.ac.ebi.interfaces.sptr.SPTRException,
                       UnsupportedOperationException

Specified by:

addSynonym in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

removeSynonym

public boolean removeSynonym(String s)
                      throws uk.ac.ebi.interfaces.sptr.SPTRException,
                             UnsupportedOperationException

Specified by:

removeSynonym in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

getSynonyms

public String[] getSynonyms()
                     throws uk.ac.ebi.interfaces.sptr.SPTRException,
                            UnsupportedOperationException

Specified by:

getSynonyms in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

setSynonyms

public void setSynonyms(String[] synonyms)
                 throws uk.ac.ebi.interfaces.sptr.SPTRException,
                        UnsupportedOperationException

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

addReaction

public void addReaction(String s)
                 throws uk.ac.ebi.interfaces.sptr.SPTRException,
                        UnsupportedOperationException

Specified by:

addReaction in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

removeReaction

public boolean removeReaction(String s)
                       throws uk.ac.ebi.interfaces.sptr.SPTRException,
                              UnsupportedOperationException

Specified by:

removeReaction in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

getReactions

public String[] getReactions()
                      throws uk.ac.ebi.interfaces.sptr.SPTRException,
                             UnsupportedOperationException

Specified by:

getReactions in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

setReactions

public void setReactions(String[] reactions)
                  throws uk.ac.ebi.interfaces.sptr.SPTRException,
                         UnsupportedOperationException

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

setCofactors

public void setCofactors(String s)
                  throws uk.ac.ebi.interfaces.sptr.SPTRException,
                         UnsupportedOperationException

Specified by:

setCofactors in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

getCofactors

public String getCofactors()
                    throws uk.ac.ebi.interfaces.sptr.SPTRException,
                           UnsupportedOperationException

Specified by:

getCofactors in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

setComment

public void setComment(String s)
                throws uk.ac.ebi.interfaces.sptr.SPTRException,
                       UnsupportedOperationException

Specified by:

setComment in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

getComment

public String getComment()
                  throws uk.ac.ebi.interfaces.sptr.SPTRException,
                         UnsupportedOperationException

Specified by:

getComment in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

addCrossReference

public void addCrossReference(uk.ac.ebi.interfaces.sptr.SPTRCrossReference sptrCrossReference)
                       throws uk.ac.ebi.interfaces.sptr.SPTRException,
                              UnsupportedOperationException

Specified by:

addCrossReference in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

addCrossReferences

public void addCrossReferences(uk.ac.ebi.interfaces.sptr.SPTRCrossReference[] sptrCrossReference)
                        throws uk.ac.ebi.interfaces.sptr.SPTRException,
                               UnsupportedOperationException

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

removeCrossReference

public boolean removeCrossReference(uk.ac.ebi.interfaces.sptr.SPTRCrossReference sptrCrossReference)
                             throws uk.ac.ebi.interfaces.sptr.SPTRException,
                                    UnsupportedOperationException

Specified by:

removeCrossReference in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

getCrossReferences

public uk.ac.ebi.interfaces.sptr.SPTRCrossReference[] getCrossReferences()
                                                                  throws uk.ac.ebi.interfaces.sptr.SPTRException,
                                                                         UnsupportedOperationException

Specified by:

getCrossReferences in interface uk.ac.ebi.interfaces.enzyme.EnzymeEntry

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

setCrossReferences

public void setCrossReferences(uk.ac.ebi.interfaces.sptr.SPTRCrossReference[] xrefs)
                        throws uk.ac.ebi.interfaces.sptr.SPTRException,
                               UnsupportedOperationException

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

UnsupportedOperationException

isTransferredOrDeleted

public boolean isTransferredOrDeleted()

setTransferredOrDeleted

public void setTransferredOrDeleted(boolean transferredOrDeleted)