uk.ac.ebi.intenz.tools.sib.sptr_enzyme

Class EnzymeXrefFactory

java.lang.Object

uk.ac.ebi.interfaces.Factory

uk.ac.ebi.intenz.tools.sib.sptr_enzyme.EnzymeXrefFactory

public class EnzymeXrefFactory
extends uk.ac.ebi.interfaces.Factory

This class is a simple extension of the abstract Factory, which allows to create EnzymeCrossReference instances only.

Version:

preliminary - $Revision: 1.2 $ $Date: 2008/01/28 11:43:22 $

Author:

Michael Darsow

Field Summary

Fields inherited from class uk.ac.ebi.interfaces.Factory

COMMENT_ALLERGEN, COMMENT_ALTERNATIVE_INITIATION, COMMENT_ALTERNATIVE_PRODUCTS, COMMENT_ALTERNATIVE_PROMOTOR, COMMENT_ALTERNATIVE_SPLICING, COMMENT_BIOPHYSICOCHEMICAL_PROPERTIES, COMMENT_BIOTECHNOLOGY, COMMENT_CATALYTIC_ACTIVITY, COMMENT_CAUTION, COMMENT_COFACTOR, COMMENT_DATABASE, COMMENT_DEVELOPMENTAL_STAGE, COMMENT_DISEASE, COMMENT_DOMAIN, COMMENT_ENZYME_REGULATION, COMMENT_FUNCTION, COMMENT_INDUCTION, COMMENT_INTERACTION, COMMENT_MASS_SPECTROMETRY, COMMENT_MISCELLANEOUS, COMMENT_PATHWAY, COMMENT_PHARMACEUTICAL, COMMENT_POLYMORPHISM, COMMENT_PTM, COMMENT_RNA_EDITING, COMMENT_SIMILARITY, COMMENT_SUBCELLULAR_LOCATION, COMMENT_SUBUNIT, COMMENT_TISSUE_SPECIFICITY, COMMENT_TOXIC_DOSE, FEATURE_TYPE_ACT_SITE, FEATURE_TYPE_BINDING, FEATURE_TYPE_CA_BIND, FEATURE_TYPE_CARBOHYD, FEATURE_TYPE_CHAIN, FEATURE_TYPE_COILED, FEATURE_TYPE_COMPBIAS, FEATURE_TYPE_CONFLICT, FEATURE_TYPE_CROSSLNK, FEATURE_TYPE_DISULFID, FEATURE_TYPE_DNA_BIND, FEATURE_TYPE_DOMAIN, FEATURE_TYPE_HELIX, FEATURE_TYPE_INIT_MET, FEATURE_TYPE_LIPID, FEATURE_TYPE_METAL, FEATURE_TYPE_MOD_RES, FEATURE_TYPE_MOTIF, FEATURE_TYPE_MUTAGEN, FEATURE_TYPE_NON_CONS, FEATURE_TYPE_NON_TER, FEATURE_TYPE_NP_BIND, FEATURE_TYPE_PEPTIDE, FEATURE_TYPE_PROPEP, FEATURE_TYPE_REGION, FEATURE_TYPE_REPEAT, FEATURE_TYPE_SE_CYS, FEATURE_TYPE_SIGNAL, FEATURE_TYPE_SIMILAR, FEATURE_TYPE_SITE, FEATURE_TYPE_STRAND, FEATURE_TYPE_THIOETH, FEATURE_TYPE_THIOLEST, FEATURE_TYPE_TOPO_DOM, FEATURE_TYPE_TRANSIT, FEATURE_TYPE_TRANSMEM, FEATURE_TYPE_TURN, FEATURE_TYPE_UNSURE, FEATURE_TYPE_VARIANT, FEATURE_TYPE_VARSPLIC, FEATURE_TYPE_ZN_FING, XREF_AARHUSGHENT2DPAGE, XREF_AGD, XREF_ANU2DPAGE, XREF_ARRAYEXPRESS, XREF_BIOCYC, XREF_BLOCKS, XREF_BURULIST, XREF_CARBBANK, XREF_CATH, XREF_CAZy, XREF_COME, XREF_COMPLUYEAST2DPAGE, XREF_CORNEA2DPAGE, XREF_CYGD, XREF_DICTYBASE, XREF_DIP, XREF_DOSACCOBS2DPAGE, XREF_DRUG_BANK, XREF_ECHOBASE, XREF_ECO2DBASE, XREF_ECOGENE, XREF_EMBL, XREF_EMBL_ANNCON, XREF_EMBL_TPA, XREF_EMBL_WGS, XREF_ENSEMBL, XREF_ENZYME, XREF_EPO, XREF_FLYBASE, XREF_GCRDB, XREF_GENE3D, XREF_GENEDBSPOMBE, XREF_GENEFARM, XREF_GENEW, XREF_GENOME_REVIEWS, XREF_GERMONLINE, XREF_GLYCOSUITEDB, XREF_GO, XREF_GRAMENE, XREF_HAMAP, XREF_HCV_DB, XREF_HGNC, XREF_HINV, XREF_HIV, XREF_HPA, XREF_HSC2DPAGE, XREF_HSSP, XREF_INTACT, XREF_INTERPRO, XREF_IPI, XREF_IUPHAR, XREF_JPO, XREF_KEGG, XREF_LEGIOLIST, XREF_LEPROMA, XREF_LINKHUB, XREF_LISTILIST, XREF_MAIZE2DPAGE, XREF_MAIZEDB, XREF_MENDEL, XREF_MEROPS, XREF_MGI, XREF_MIM, XREF_MSDSITE, XREF_MYPULIST, XREF_OGP, XREF_PANDIT, XREF_PANTHER, XREF_PDB, XREF_PEROXIBASE, XREF_PFAM, XREF_PHCI2DPAGE, XREF_PHOSSITE, XREF_PHOTOLIST, XREF_PIR, XREF_PIRARC, XREF_PIRSF, XREF_PMMA2DPAGE, XREF_PPTASEDB, XREF_PRF, XREF_PRINTS, XREF_PRODOM, XREF_PROSITE, XREF_PROSITE_DOC, XREF_RAT_HEART_2DPAGE, XREF_REACTOME, XREF_REBASE, XREF_REFSEQ, XREF_REMTREMBL, XREF_REPRODUCTION2DPAGE, XREF_RGD, XREF_RZPD_PROTEXP, XREF_SAGALIST, XREF_SCOP, XREF_SGD, XREF_SIENA2DPAGE, XREF_SMART, XREF_SMR, XREF_STYGENE, XREF_SUBTILIST, XREF_SWISS2DPAGE, XREF_SWISSPROT, XREF_SWISSPROT_VARSPLIC, XREF_TAIR, XREF_TIGR, XREF_TIGRFAMS, XREF_TRANSFAC, XREF_TREMBL, XREF_TREMBL_NEW, XREF_TREMBL_VARSPLIC, XREF_TROME, XREF_TUBERCULIST, XREF_UNIGENE, XREF_UPO, XREF_VEGA, XREF_WORMBASE, XREF_WORMPEP, XREF_ZFIN

Constructor Summary

Constructors

Constructor and Description
EnzymeXrefFactory()

Method Summary

Methods

Modifier and Type	Method and Description
uk.ac.ebi.interfaces.sptr.Absorption	copyAbsorptionInstance(uk.ac.ebi.interfaces.sptr.Absorption absorption)
uk.ac.ebi.interfaces.interpro.Annotation	copyAnnotationInstance(uk.ac.ebi.interfaces.interpro.Annotation annotation)
uk.ac.ebi.interfaces.citation.Author	copyAuthorInstance(uk.ac.ebi.interfaces.citation.Author author)
uk.ac.ebi.interfaces.citation.Book	copyBookInstance(uk.ac.ebi.interfaces.citation.Book book)
uk.ac.ebi.interfaces.clustr.CluSTrEntry	copyCluSTrEntry(uk.ac.ebi.interfaces.clustr.CluSTrEntry cluSTrEntry)
uk.ac.ebi.interfaces.citation.ElectronicArticle	copyElectronicArticleInstance(uk.ac.ebi.interfaces.citation.ElectronicArticle electronicArticle)
uk.ac.ebi.interfaces.enzyme.EnzymeEntry	copyEnzymeEntryInstance(uk.ac.ebi.interfaces.enzyme.EnzymeEntry entry)
uk.ac.ebi.interfaces.feature.Feature	copyFeatureInstance(uk.ac.ebi.interfaces.feature.Feature feature)
uk.ac.ebi.interfaces.feature.FeatureLocation	copyFeatureLocationInstance(uk.ac.ebi.interfaces.feature.FeatureLocation location)
uk.ac.ebi.interfaces.sptr.Gene	copyGeneInstance(uk.ac.ebi.interfaces.sptr.Gene gene)
uk.ac.ebi.interfaces.go.GOEvidence	copyGOEvidence(uk.ac.ebi.interfaces.go.GOEvidence goEvidence)
uk.ac.ebi.interfaces.go.GOProteinData	copyGOProteinData(uk.ac.ebi.interfaces.go.GOProteinData goProteinData)
uk.ac.ebi.interfaces.go.GOStructure	copyGOStructure(uk.ac.ebi.interfaces.go.GOStructure goStructure)
uk.ac.ebi.interfaces.go.GOTerm	copyGOTerm(uk.ac.ebi.interfaces.go.GOTerm goTerm)
uk.ac.ebi.interfaces.integr8.Gene	copyIntegr8GeneInstance(uk.ac.ebi.interfaces.sptr.Gene gene)
uk.ac.ebi.interfaces.integr8.Gene	copyIntegr8GeneInstance(uk.ac.ebi.interfaces.integr8.Gene gene)
uk.ac.ebi.interfaces.integr8.SPTREntry	copyIntegr8SPTREntryInstance(uk.ac.ebi.interfaces.integr8.SPTREntry sptrEntry)
uk.ac.ebi.interfaces.interpro.InterProCrossReference	copyInterProCrossReferenceInstance(uk.ac.ebi.interfaces.interpro.InterProCrossReference interProCrossReference)
uk.ac.ebi.interfaces.interpro.InterProEntry	copyInterProEntry(uk.ac.ebi.interfaces.interpro.InterProEntry interProEntry)
uk.ac.ebi.interfaces.interpro.InterProProteinData	copyInterProProteinData(uk.ac.ebi.interfaces.interpro.InterProProteinData interProProteinData)
uk.ac.ebi.interfaces.interpro.InterProStructure	copyInterProStructure(uk.ac.ebi.interfaces.interpro.InterProStructure interProStructure)
uk.ac.ebi.interfaces.sptr.Isoform	copyIsoformInstance(uk.ac.ebi.interfaces.sptr.Isoform isoform)
uk.ac.ebi.interfaces.citation.JournalArticle	copyJournalArticleInstance(uk.ac.ebi.interfaces.citation.JournalArticle journalArticle)
uk.ac.ebi.interfaces.sptr.KineticParameter	copyKineticParameterInstance(uk.ac.ebi.interfaces.sptr.KineticParameter kineticParameter)
uk.ac.ebi.interfaces.sptr.MassSpectrometryRange	copyMassSpectrometryRangeInstance(uk.ac.ebi.interfaces.sptr.MassSpectrometryRange massSpectrometryRange)
uk.ac.ebi.interfaces.sptr.MaximumVelocity	copyMaximumVelocityInstance(uk.ac.ebi.interfaces.sptr.MaximumVelocity maximumVelocity)
uk.ac.ebi.interfaces.sptr.MichaelisConstant	copyMichaelisConstantInstance(uk.ac.ebi.interfaces.sptr.MichaelisConstant michaelisConstant)
uk.ac.ebi.interfaces.citation.Patent	copyPatentInstance(uk.ac.ebi.interfaces.citation.Patent patent)
uk.ac.ebi.interfaces.pythia.PredictiveInstance	copyPredictiveInstance(uk.ac.ebi.interfaces.pythia.PredictiveInstance predictiveInstance)
uk.ac.ebi.interfaces.integr8.ProteomeEntry	copyProteomeEntryInstance(uk.ac.ebi.interfaces.integr8.ProteomeEntry proteomeEntry)
uk.ac.ebi.interfaces.pythia.PythiaEntry	copyPythiaEntryInstance(uk.ac.ebi.interfaces.pythia.PythiaEntry pythiaEntry)
uk.ac.ebi.interfaces.interpro.SignatureDBHit	copySignaturDBHit(uk.ac.ebi.interfaces.interpro.SignatureDBHit signatureDBHit)
uk.ac.ebi.interfaces.interpro.SignatureDBEntry	copySignatureDBEntry(uk.ac.ebi.interfaces.interpro.SignatureDBEntry signatureDBEntry)
uk.ac.ebi.interfaces.sptr.spin.SPINSubmission	copySPINSubmissionInstance(uk.ac.ebi.interfaces.sptr.spin.SPINSubmission spinSubmission)
uk.ac.ebi.interfaces.sptr.SPTRComment	copySPTRCommentInstance(uk.ac.ebi.interfaces.sptr.SPTRComment sptrComment)
uk.ac.ebi.interfaces.sptr.SPTRCrossReference	copySPTRCrossReference(uk.ac.ebi.interfaces.sptr.SPTRCrossReference sptrCrossReference)
uk.ac.ebi.interfaces.sptr.SPTRCrossReference	copySPTRCrossReferenceInstance(uk.ac.ebi.interfaces.sptr.SPTRCrossReference sptrCrossReference)
uk.ac.ebi.interfaces.sptr.SPTREntry	copySPTREntryInstance(uk.ac.ebi.interfaces.sptr.SPTREntry entry)
uk.ac.ebi.interfaces.citation.Submission	copySubmissionInstance(uk.ac.ebi.interfaces.citation.Submission submission)
uk.ac.ebi.interfaces.citation.Thesis	copyThesisInstance(uk.ac.ebi.interfaces.citation.Thesis thesis)
uk.ac.ebi.interfaces.uniparc.UniParcCrossReference	copyUniParcCrossReference(uk.ac.ebi.interfaces.uniparc.UniParcCrossReference uniParcCrossReference)
uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData	copyUniParcCrossReferenceMetaData(uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData uniParcCrossReferenceMetaData)
uk.ac.ebi.interfaces.uniparc.UniParcEntry	copyUniParcEntry(uk.ac.ebi.interfaces.uniparc.UniParcEntry uniParcEntry)
uk.ac.ebi.interfaces.citation.UnpublishedObservations	copyUnpublishedObservationsInstance(uk.ac.ebi.interfaces.citation.UnpublishedObservations unpublishedObservations)
uk.ac.ebi.interfaces.citation.UnpublishedResults	copyUnpublishedResultsInstance(uk.ac.ebi.interfaces.citation.UnpublishedResults unpublishedResults)
uk.ac.ebi.interfaces.sptr.Absorption	newAbsorptionInstance()
uk.ac.ebi.interfaces.interpro.Annotation	newAnnotationInstance()
uk.ac.ebi.interfaces.citation.Author	newAuthorInstance()
uk.ac.ebi.interfaces.citation.Book	newBookInstance()
uk.ac.ebi.interfaces.uniref.ClusterMember	newClusterMember(String s)
uk.ac.ebi.interfaces.clustr.CluSTrEntry	newCluSTrEntry()
uk.ac.ebi.interfaces.citation.ElectronicArticle	newElectronicArticleInstance()
uk.ac.ebi.interfaces.sptr.SPTRCrossReference	newEnzymeCrossReference(String type) Returns a new instance of an EnzymeCrossReference.
uk.ac.ebi.interfaces.enzyme.EnzymeEntry	newEnzymeEntryInstance()
uk.ac.ebi.interfaces.feature.Feature	newFeatureInstance(String featureType)
uk.ac.ebi.interfaces.feature.FeatureLocation	newFeatureLocationInstance()
uk.ac.ebi.interfaces.sptr.Gene	newGeneInstance()
uk.ac.ebi.interfaces.go.GOEvidence	newGOEvidence()
uk.ac.ebi.interfaces.go.GOProteinData	newGOProteinData(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
uk.ac.ebi.interfaces.go.GOStructure	newGOStructure()
uk.ac.ebi.interfaces.go.GOTerm	newGOTerm()
uk.ac.ebi.interfaces.integr8.Gene	newIntegr8GeneInstance()
uk.ac.ebi.interfaces.integr8.SPTREntry	newIntegr8SPTREntryInstance(int i)
uk.ac.ebi.interfaces.integr8.SPTREntry	newIntegr8SPTREntryInstance(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
uk.ac.ebi.interfaces.interpro.InterProCrossReference	newInterProCrossReferenceInstance(String s)
uk.ac.ebi.interfaces.interpro.InterProEntry	newInterProEntry()
uk.ac.ebi.interfaces.interpro.InterProProteinData	newInterProProteinData(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
uk.ac.ebi.interfaces.interpro.InterProStructure	newInterProStructure(uk.ac.ebi.interfaces.interpro.InterProEntry interProEntry)
uk.ac.ebi.interfaces.sptr.Isoform	newIsoformInstance()
uk.ac.ebi.interfaces.citation.JournalArticle	newJournalArticleInstance()
uk.ac.ebi.interfaces.sptr.KineticParameter	newKineticParameterInstance()
uk.ac.ebi.interfaces.sptr.MassSpectrometryRange	newMassSpectrometryRangeInstance()
uk.ac.ebi.interfaces.sptr.MaximumVelocity	newMaximumVelocityInstance()
uk.ac.ebi.interfaces.sptr.MichaelisConstant	newMichaelisConstantInstance()
uk.ac.ebi.interfaces.citation.Patent	newPatentInstance()
uk.ac.ebi.interfaces.pythia.PredictiveInstance	newPredictiveInstance(String s)
uk.ac.ebi.interfaces.integr8.ProteomeEntry	newProteomeEntryInstance()
uk.ac.ebi.interfaces.pythia.PythiaEntry	newPythiaEntryInstance(int i)
uk.ac.ebi.interfaces.interpro.SignatureDBEntry	newSignatureDBEntry(int i)
uk.ac.ebi.interfaces.interpro.SignatureDBHit	newSignatureDBHit()
uk.ac.ebi.interfaces.sptr.spin.SPINSubmission	newSPINSubmissionInstance()
uk.ac.ebi.interfaces.sptr.SPTRComment	newSPTRCommentInstance(String type)
uk.ac.ebi.interfaces.sptr.SPTRCrossReference	newSPTRCrossReference(String type)
uk.ac.ebi.interfaces.sptr.SPTRCrossReference	newSPTRCrossReferenceInstance(String s)
uk.ac.ebi.interfaces.sptr.SPTREntry	newSPTREntryInstance()
uk.ac.ebi.interfaces.sptr.SPTREntry	newSPTREntryInstance(int entryType)
uk.ac.ebi.interfaces.citation.Submission	newSubmissionInstance()
uk.ac.ebi.interfaces.citation.Thesis	newThesisInstance()
uk.ac.ebi.interfaces.uniparc.UniParcCrossReference	newUniParcCrossReference(String s)
uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData	newUniParcCrossReferenceMetaData()
uk.ac.ebi.interfaces.uniparc.UniParcEntry	newUniParcEntry()
uk.ac.ebi.interfaces.uniparc.UniParcEntry	newUniParcEntry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry, String s, uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData uniParcCrossReferenceMetaData)
uk.ac.ebi.interfaces.uniref.UniRef100Entry	newUniRef100Entry()
uk.ac.ebi.interfaces.uniref.UniRef100Entry	newUniRef100Entry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
uk.ac.ebi.interfaces.uniref.UniRef50Entry	newUniRef50Entry()
uk.ac.ebi.interfaces.uniref.UniRef50Entry	newUniRef50Entry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
uk.ac.ebi.interfaces.uniref.UniRef90Entry	newUniRef90Entry()
uk.ac.ebi.interfaces.uniref.UniRef90Entry	newUniRef90Entry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
uk.ac.ebi.interfaces.citation.UnpublishedObservations	newUnpublishedObservationsInstance()
uk.ac.ebi.interfaces.citation.UnpublishedResults	newUnpublishedResultsInstance()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EnzymeXrefFactory

public EnzymeXrefFactory()

Method Detail

newSPTREntryInstance

public uk.ac.ebi.interfaces.sptr.SPTREntry newSPTREntryInstance(int entryType)
                                                         throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

newSPTREntryInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

newSPTREntryInstance

public uk.ac.ebi.interfaces.sptr.SPTREntry newSPTREntryInstance()
                                                         throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

newSPTREntryInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

copySPTREntryInstance

public uk.ac.ebi.interfaces.sptr.SPTREntry copySPTREntryInstance(uk.ac.ebi.interfaces.sptr.SPTREntry entry)
                                                          throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

copySPTREntryInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

newEnzymeEntryInstance

public uk.ac.ebi.interfaces.enzyme.EnzymeEntry newEnzymeEntryInstance()
                                                               throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

newEnzymeEntryInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

copyEnzymeEntryInstance

public uk.ac.ebi.interfaces.enzyme.EnzymeEntry copyEnzymeEntryInstance(uk.ac.ebi.interfaces.enzyme.EnzymeEntry entry)
                                                                throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

copyEnzymeEntryInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

newFeatureInstance

public uk.ac.ebi.interfaces.feature.Feature newFeatureInstance(String featureType)
                                                        throws uk.ac.ebi.interfaces.feature.FeatureException

Specified by:

newFeatureInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.feature.FeatureException

copyFeatureInstance

public uk.ac.ebi.interfaces.feature.Feature copyFeatureInstance(uk.ac.ebi.interfaces.feature.Feature feature)
                                                         throws uk.ac.ebi.interfaces.feature.FeatureException

Specified by:

copyFeatureInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.feature.FeatureException

newFeatureLocationInstance

public uk.ac.ebi.interfaces.feature.FeatureLocation newFeatureLocationInstance()
                                                                        throws uk.ac.ebi.interfaces.feature.FeatureException

Specified by:

newFeatureLocationInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.feature.FeatureException

copyFeatureLocationInstance

public uk.ac.ebi.interfaces.feature.FeatureLocation copyFeatureLocationInstance(uk.ac.ebi.interfaces.feature.FeatureLocation location)
                                                                         throws uk.ac.ebi.interfaces.feature.FeatureException

Specified by:

copyFeatureLocationInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.feature.FeatureException

newAuthorInstance

public uk.ac.ebi.interfaces.citation.Author newAuthorInstance()
                                                       throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

newAuthorInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

copyAuthorInstance

public uk.ac.ebi.interfaces.citation.Author copyAuthorInstance(uk.ac.ebi.interfaces.citation.Author author)
                                                        throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

copyAuthorInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

newBookInstance

public uk.ac.ebi.interfaces.citation.Book newBookInstance()
                                                   throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

newBookInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

copyBookInstance

public uk.ac.ebi.interfaces.citation.Book copyBookInstance(uk.ac.ebi.interfaces.citation.Book book)
                                                    throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

copyBookInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

newElectronicArticleInstance

public uk.ac.ebi.interfaces.citation.ElectronicArticle newElectronicArticleInstance()
                                                                             throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

newElectronicArticleInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

copyElectronicArticleInstance

public uk.ac.ebi.interfaces.citation.ElectronicArticle copyElectronicArticleInstance(uk.ac.ebi.interfaces.citation.ElectronicArticle electronicArticle)
                                                                              throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

copyElectronicArticleInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

newJournalArticleInstance

public uk.ac.ebi.interfaces.citation.JournalArticle newJournalArticleInstance()
                                                                       throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

newJournalArticleInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

copyJournalArticleInstance

public uk.ac.ebi.interfaces.citation.JournalArticle copyJournalArticleInstance(uk.ac.ebi.interfaces.citation.JournalArticle journalArticle)
                                                                        throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

copyJournalArticleInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

newPatentInstance

public uk.ac.ebi.interfaces.citation.Patent newPatentInstance()
                                                       throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

newPatentInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

copyPatentInstance

public uk.ac.ebi.interfaces.citation.Patent copyPatentInstance(uk.ac.ebi.interfaces.citation.Patent patent)
                                                        throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

copyPatentInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

newSubmissionInstance

public uk.ac.ebi.interfaces.citation.Submission newSubmissionInstance()
                                                               throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

newSubmissionInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

copySubmissionInstance

public uk.ac.ebi.interfaces.citation.Submission copySubmissionInstance(uk.ac.ebi.interfaces.citation.Submission submission)
                                                                throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

copySubmissionInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

newThesisInstance

public uk.ac.ebi.interfaces.citation.Thesis newThesisInstance()
                                                       throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

newThesisInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

copyThesisInstance

public uk.ac.ebi.interfaces.citation.Thesis copyThesisInstance(uk.ac.ebi.interfaces.citation.Thesis thesis)
                                                        throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

copyThesisInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

newUnpublishedObservationsInstance

public uk.ac.ebi.interfaces.citation.UnpublishedObservations newUnpublishedObservationsInstance()
                                                                                         throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

newUnpublishedObservationsInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

copyUnpublishedObservationsInstance

public uk.ac.ebi.interfaces.citation.UnpublishedObservations copyUnpublishedObservationsInstance(uk.ac.ebi.interfaces.citation.UnpublishedObservations unpublishedObservations)
                                                                                          throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

copyUnpublishedObservationsInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

newUnpublishedResultsInstance

public uk.ac.ebi.interfaces.citation.UnpublishedResults newUnpublishedResultsInstance()
                                                                               throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

newUnpublishedResultsInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

copyUnpublishedResultsInstance

public uk.ac.ebi.interfaces.citation.UnpublishedResults copyUnpublishedResultsInstance(uk.ac.ebi.interfaces.citation.UnpublishedResults unpublishedResults)
                                                                                throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

copyUnpublishedResultsInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

newSPTRCommentInstance

public uk.ac.ebi.interfaces.sptr.SPTRComment newSPTRCommentInstance(String type)
                                                             throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

newSPTRCommentInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

copySPTRCommentInstance

public uk.ac.ebi.interfaces.sptr.SPTRComment copySPTRCommentInstance(uk.ac.ebi.interfaces.sptr.SPTRComment sptrComment)
                                                              throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

copySPTRCommentInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

newIsoformInstance

public uk.ac.ebi.interfaces.sptr.Isoform newIsoformInstance()
                                                     throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

newIsoformInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

copyIsoformInstance

public uk.ac.ebi.interfaces.sptr.Isoform copyIsoformInstance(uk.ac.ebi.interfaces.sptr.Isoform isoform)
                                                      throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

copyIsoformInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

newEnzymeCrossReference

public uk.ac.ebi.interfaces.sptr.SPTRCrossReference newEnzymeCrossReference(String type)
                                                                     throws uk.ac.ebi.interfaces.sptr.SPTRException

Returns a new instance of an EnzymeCrossReference.

Returns:

A new instance of an EnzymeCrossReference.

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException - Needs to be implemented by individual application.

newSPTRCrossReference

public uk.ac.ebi.interfaces.sptr.SPTRCrossReference newSPTRCrossReference(String type)
                                                                   throws uk.ac.ebi.interfaces.sptr.SPTRException

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

copySPTRCrossReference

public uk.ac.ebi.interfaces.sptr.SPTRCrossReference copySPTRCrossReference(uk.ac.ebi.interfaces.sptr.SPTRCrossReference sptrCrossReference)
                                                                    throws uk.ac.ebi.interfaces.sptr.SPTRException

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

copyProteomeEntryInstance

public uk.ac.ebi.interfaces.integr8.ProteomeEntry copyProteomeEntryInstance(uk.ac.ebi.interfaces.integr8.ProteomeEntry proteomeEntry)
                                                                     throws uk.ac.ebi.interfaces.integr8.Integr8Exception

Specified by:

copyProteomeEntryInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.integr8.Integr8Exception

newSPINSubmissionInstance

public uk.ac.ebi.interfaces.sptr.spin.SPINSubmission newSPINSubmissionInstance()
                                                                        throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

newSPINSubmissionInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

copySPINSubmissionInstance

public uk.ac.ebi.interfaces.sptr.spin.SPINSubmission copySPINSubmissionInstance(uk.ac.ebi.interfaces.sptr.spin.SPINSubmission spinSubmission)
                                                                         throws uk.ac.ebi.interfaces.citation.CitationException

Specified by:

copySPINSubmissionInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.citation.CitationException

newSPTRCrossReferenceInstance

public uk.ac.ebi.interfaces.sptr.SPTRCrossReference newSPTRCrossReferenceInstance(String s)
                                                                           throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

newSPTRCrossReferenceInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

copySPTRCrossReferenceInstance

public uk.ac.ebi.interfaces.sptr.SPTRCrossReference copySPTRCrossReferenceInstance(uk.ac.ebi.interfaces.sptr.SPTRCrossReference sptrCrossReference)
                                                                            throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

copySPTRCrossReferenceInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

newPythiaEntryInstance

public uk.ac.ebi.interfaces.pythia.PythiaEntry newPythiaEntryInstance(int i)
                                                               throws uk.ac.ebi.interfaces.pythia.PythiaException

Specified by:

newPythiaEntryInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.pythia.PythiaException

copyPythiaEntryInstance

public uk.ac.ebi.interfaces.pythia.PythiaEntry copyPythiaEntryInstance(uk.ac.ebi.interfaces.pythia.PythiaEntry pythiaEntry)
                                                                throws uk.ac.ebi.interfaces.pythia.PythiaException

Specified by:

copyPythiaEntryInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.pythia.PythiaException

newPredictiveInstance

public uk.ac.ebi.interfaces.pythia.PredictiveInstance newPredictiveInstance(String s)
                                                                     throws uk.ac.ebi.interfaces.pythia.PythiaException

Specified by:

newPredictiveInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.pythia.PythiaException

copyPredictiveInstance

public uk.ac.ebi.interfaces.pythia.PredictiveInstance copyPredictiveInstance(uk.ac.ebi.interfaces.pythia.PredictiveInstance predictiveInstance)
                                                                      throws uk.ac.ebi.interfaces.pythia.PythiaException

Specified by:

copyPredictiveInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.pythia.PythiaException

newInterProProteinData

public uk.ac.ebi.interfaces.interpro.InterProProteinData newInterProProteinData(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
                                                                         throws uk.ac.ebi.interfaces.interpro.InterProException

Specified by:

newInterProProteinData in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.interpro.InterProException

copyInterProProteinData

public uk.ac.ebi.interfaces.interpro.InterProProteinData copyInterProProteinData(uk.ac.ebi.interfaces.interpro.InterProProteinData interProProteinData)
                                                                          throws uk.ac.ebi.interfaces.interpro.InterProException

Specified by:

copyInterProProteinData in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.interpro.InterProException

newInterProStructure

public uk.ac.ebi.interfaces.interpro.InterProStructure newInterProStructure(uk.ac.ebi.interfaces.interpro.InterProEntry interProEntry)
                                                                     throws uk.ac.ebi.interfaces.interpro.InterProException

Specified by:

newInterProStructure in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.interpro.InterProException

copyInterProStructure

public uk.ac.ebi.interfaces.interpro.InterProStructure copyInterProStructure(uk.ac.ebi.interfaces.interpro.InterProStructure interProStructure)
                                                                      throws uk.ac.ebi.interfaces.interpro.InterProException

Specified by:

copyInterProStructure in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.interpro.InterProException

newInterProEntry

public uk.ac.ebi.interfaces.interpro.InterProEntry newInterProEntry()
                                                             throws uk.ac.ebi.interfaces.interpro.InterProException

Specified by:

newInterProEntry in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.interpro.InterProException

copyInterProEntry

public uk.ac.ebi.interfaces.interpro.InterProEntry copyInterProEntry(uk.ac.ebi.interfaces.interpro.InterProEntry interProEntry)
                                                              throws uk.ac.ebi.interfaces.interpro.InterProException

Specified by:

copyInterProEntry in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.interpro.InterProException

newSignatureDBHit

public uk.ac.ebi.interfaces.interpro.SignatureDBHit newSignatureDBHit()
                                                               throws uk.ac.ebi.interfaces.interpro.InterProException

Specified by:

newSignatureDBHit in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.interpro.InterProException

copySignaturDBHit

public uk.ac.ebi.interfaces.interpro.SignatureDBHit copySignaturDBHit(uk.ac.ebi.interfaces.interpro.SignatureDBHit signatureDBHit)
                                                               throws uk.ac.ebi.interfaces.interpro.InterProException

Specified by:

copySignaturDBHit in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.interpro.InterProException

newSignatureDBEntry

public uk.ac.ebi.interfaces.interpro.SignatureDBEntry newSignatureDBEntry(int i)
                                                                   throws uk.ac.ebi.interfaces.interpro.InterProException

Specified by:

newSignatureDBEntry in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.interpro.InterProException

copySignatureDBEntry

public uk.ac.ebi.interfaces.interpro.SignatureDBEntry copySignatureDBEntry(uk.ac.ebi.interfaces.interpro.SignatureDBEntry signatureDBEntry)
                                                                    throws uk.ac.ebi.interfaces.interpro.InterProException

Specified by:

copySignatureDBEntry in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.interpro.InterProException

newAnnotationInstance

public uk.ac.ebi.interfaces.interpro.Annotation newAnnotationInstance()
                                                               throws uk.ac.ebi.interfaces.interpro.InterProException

Specified by:

newAnnotationInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.interpro.InterProException

copyAnnotationInstance

public uk.ac.ebi.interfaces.interpro.Annotation copyAnnotationInstance(uk.ac.ebi.interfaces.interpro.Annotation annotation)
                                                                throws uk.ac.ebi.interfaces.interpro.InterProException

Specified by:

copyAnnotationInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.interpro.InterProException

newInterProCrossReferenceInstance

public uk.ac.ebi.interfaces.interpro.InterProCrossReference newInterProCrossReferenceInstance(String s)
                                                                                       throws uk.ac.ebi.interfaces.interpro.InterProException

Specified by:

newInterProCrossReferenceInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.interpro.InterProException

copyInterProCrossReferenceInstance

public uk.ac.ebi.interfaces.interpro.InterProCrossReference copyInterProCrossReferenceInstance(uk.ac.ebi.interfaces.interpro.InterProCrossReference interProCrossReference)
                                                                                        throws uk.ac.ebi.interfaces.interpro.InterProException

Specified by:

copyInterProCrossReferenceInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.interpro.InterProException

newGOTerm

public uk.ac.ebi.interfaces.go.GOTerm newGOTerm()
                                         throws uk.ac.ebi.interfaces.go.GOException

Specified by:

newGOTerm in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.go.GOException

copyGOTerm

public uk.ac.ebi.interfaces.go.GOTerm copyGOTerm(uk.ac.ebi.interfaces.go.GOTerm goTerm)
                                          throws uk.ac.ebi.interfaces.go.GOException

Specified by:

copyGOTerm in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.go.GOException

newGOEvidence

public uk.ac.ebi.interfaces.go.GOEvidence newGOEvidence()
                                                 throws uk.ac.ebi.interfaces.go.GOException

Specified by:

newGOEvidence in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.go.GOException

copyGOEvidence

public uk.ac.ebi.interfaces.go.GOEvidence copyGOEvidence(uk.ac.ebi.interfaces.go.GOEvidence goEvidence)
                                                  throws uk.ac.ebi.interfaces.go.GOException

Specified by:

copyGOEvidence in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.go.GOException

newGOProteinData

public uk.ac.ebi.interfaces.go.GOProteinData newGOProteinData(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
                                                       throws uk.ac.ebi.interfaces.go.GOException

Specified by:

newGOProteinData in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.go.GOException

copyGOProteinData

public uk.ac.ebi.interfaces.go.GOProteinData copyGOProteinData(uk.ac.ebi.interfaces.go.GOProteinData goProteinData)
                                                        throws uk.ac.ebi.interfaces.go.GOException

Specified by:

copyGOProteinData in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.go.GOException

newGOStructure

public uk.ac.ebi.interfaces.go.GOStructure newGOStructure()
                                                   throws uk.ac.ebi.interfaces.go.GOException

Specified by:

newGOStructure in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.go.GOException

copyGOStructure

public uk.ac.ebi.interfaces.go.GOStructure copyGOStructure(uk.ac.ebi.interfaces.go.GOStructure goStructure)
                                                    throws uk.ac.ebi.interfaces.go.GOException

Specified by:

copyGOStructure in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.go.GOException

newCluSTrEntry

public uk.ac.ebi.interfaces.clustr.CluSTrEntry newCluSTrEntry()
                                                       throws uk.ac.ebi.interfaces.clustr.CluSTrException

Specified by:

newCluSTrEntry in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.clustr.CluSTrException

copyCluSTrEntry

public uk.ac.ebi.interfaces.clustr.CluSTrEntry copyCluSTrEntry(uk.ac.ebi.interfaces.clustr.CluSTrEntry cluSTrEntry)
                                                        throws uk.ac.ebi.interfaces.clustr.CluSTrException

Specified by:

copyCluSTrEntry in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.clustr.CluSTrException

newUniParcEntry

public uk.ac.ebi.interfaces.uniparc.UniParcEntry newUniParcEntry()
                                                          throws uk.ac.ebi.interfaces.uniparc.UniParcException

Specified by:

newUniParcEntry in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.uniparc.UniParcException

newUniParcEntry

public uk.ac.ebi.interfaces.uniparc.UniParcEntry newUniParcEntry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry,
                                                        String s,
                                                        uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData uniParcCrossReferenceMetaData)
                                                          throws uk.ac.ebi.interfaces.uniparc.UniParcException

Specified by:

newUniParcEntry in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.uniparc.UniParcException

copyUniParcEntry

public uk.ac.ebi.interfaces.uniparc.UniParcEntry copyUniParcEntry(uk.ac.ebi.interfaces.uniparc.UniParcEntry uniParcEntry)
                                                           throws uk.ac.ebi.interfaces.uniparc.UniParcException

Specified by:

copyUniParcEntry in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.uniparc.UniParcException

newUniParcCrossReference

public uk.ac.ebi.interfaces.uniparc.UniParcCrossReference newUniParcCrossReference(String s)
                                                                            throws uk.ac.ebi.interfaces.uniparc.UniParcException

Specified by:

newUniParcCrossReference in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.uniparc.UniParcException

copyUniParcCrossReference

public uk.ac.ebi.interfaces.uniparc.UniParcCrossReference copyUniParcCrossReference(uk.ac.ebi.interfaces.uniparc.UniParcCrossReference uniParcCrossReference)
                                                                             throws uk.ac.ebi.interfaces.uniparc.UniParcException

Specified by:

copyUniParcCrossReference in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.uniparc.UniParcException

newUniParcCrossReferenceMetaData

public uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData newUniParcCrossReferenceMetaData()
                                                                                            throws uk.ac.ebi.interfaces.uniparc.UniParcException

Specified by:

newUniParcCrossReferenceMetaData in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.uniparc.UniParcException

copyUniParcCrossReferenceMetaData

public uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData copyUniParcCrossReferenceMetaData(uk.ac.ebi.interfaces.uniparc.UniParcCrossReferenceMetaData uniParcCrossReferenceMetaData)
                                                                                             throws uk.ac.ebi.interfaces.uniparc.UniParcException

Specified by:

copyUniParcCrossReferenceMetaData in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.uniparc.UniParcException

newUniRef100Entry

public uk.ac.ebi.interfaces.uniref.UniRef100Entry newUniRef100Entry()
                                                             throws uk.ac.ebi.interfaces.uniref.UniRefException

Specified by:

newUniRef100Entry in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.uniref.UniRefException

newUniRef100Entry

public uk.ac.ebi.interfaces.uniref.UniRef100Entry newUniRef100Entry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
                                                             throws uk.ac.ebi.interfaces.uniref.UniRefException

Specified by:

newUniRef100Entry in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.uniref.UniRefException

newUniRef90Entry

public uk.ac.ebi.interfaces.uniref.UniRef90Entry newUniRef90Entry()
                                                           throws uk.ac.ebi.interfaces.uniref.UniRefException

Specified by:

newUniRef90Entry in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.uniref.UniRefException

newUniRef90Entry

public uk.ac.ebi.interfaces.uniref.UniRef90Entry newUniRef90Entry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
                                                           throws uk.ac.ebi.interfaces.uniref.UniRefException

Specified by:

newUniRef90Entry in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.uniref.UniRefException

newUniRef50Entry

public uk.ac.ebi.interfaces.uniref.UniRef50Entry newUniRef50Entry()
                                                           throws uk.ac.ebi.interfaces.uniref.UniRefException

Specified by:

newUniRef50Entry in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.uniref.UniRefException

newUniRef50Entry

public uk.ac.ebi.interfaces.uniref.UniRef50Entry newUniRef50Entry(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
                                                           throws uk.ac.ebi.interfaces.uniref.UniRefException

Specified by:

newUniRef50Entry in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.uniref.UniRefException

newClusterMember

public uk.ac.ebi.interfaces.uniref.ClusterMember newClusterMember(String s)
                                                           throws uk.ac.ebi.interfaces.uniref.UniRefException

Specified by:

newClusterMember in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.uniref.UniRefException

newGeneInstance

public uk.ac.ebi.interfaces.sptr.Gene newGeneInstance()
                                               throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

newGeneInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

copyGeneInstance

public uk.ac.ebi.interfaces.sptr.Gene copyGeneInstance(uk.ac.ebi.interfaces.sptr.Gene gene)
                                                throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

copyGeneInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

newIntegr8SPTREntryInstance

public uk.ac.ebi.interfaces.integr8.SPTREntry newIntegr8SPTREntryInstance(int i)
                                                                   throws uk.ac.ebi.interfaces.integr8.Integr8Exception

Specified by:

newIntegr8SPTREntryInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.integr8.Integr8Exception

newIntegr8SPTREntryInstance

public uk.ac.ebi.interfaces.integr8.SPTREntry newIntegr8SPTREntryInstance(uk.ac.ebi.interfaces.sptr.SPTREntry sptrEntry)
                                                                   throws uk.ac.ebi.interfaces.integr8.Integr8Exception

Specified by:

newIntegr8SPTREntryInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.integr8.Integr8Exception

copyIntegr8SPTREntryInstance

public uk.ac.ebi.interfaces.integr8.SPTREntry copyIntegr8SPTREntryInstance(uk.ac.ebi.interfaces.integr8.SPTREntry sptrEntry)
                                                                    throws uk.ac.ebi.interfaces.integr8.Integr8Exception

Specified by:

copyIntegr8SPTREntryInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.integr8.Integr8Exception

newIntegr8GeneInstance

public uk.ac.ebi.interfaces.integr8.Gene newIntegr8GeneInstance()
                                                         throws uk.ac.ebi.interfaces.integr8.Integr8Exception

Specified by:

newIntegr8GeneInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.integr8.Integr8Exception

copyIntegr8GeneInstance

public uk.ac.ebi.interfaces.integr8.Gene copyIntegr8GeneInstance(uk.ac.ebi.interfaces.sptr.Gene gene)
                                                          throws uk.ac.ebi.interfaces.integr8.Integr8Exception

Specified by:

copyIntegr8GeneInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.integr8.Integr8Exception

copyIntegr8GeneInstance

public uk.ac.ebi.interfaces.integr8.Gene copyIntegr8GeneInstance(uk.ac.ebi.interfaces.integr8.Gene gene)
                                                          throws uk.ac.ebi.interfaces.integr8.Integr8Exception

Specified by:

copyIntegr8GeneInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.integr8.Integr8Exception

newProteomeEntryInstance

public uk.ac.ebi.interfaces.integr8.ProteomeEntry newProteomeEntryInstance()
                                                                    throws uk.ac.ebi.interfaces.integr8.Integr8Exception

Specified by:

newProteomeEntryInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.integr8.Integr8Exception

newAbsorptionInstance

public uk.ac.ebi.interfaces.sptr.Absorption newAbsorptionInstance()
                                                           throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

newAbsorptionInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

copyAbsorptionInstance

public uk.ac.ebi.interfaces.sptr.Absorption copyAbsorptionInstance(uk.ac.ebi.interfaces.sptr.Absorption absorption)
                                                            throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

copyAbsorptionInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

newKineticParameterInstance

public uk.ac.ebi.interfaces.sptr.KineticParameter newKineticParameterInstance()
                                                                       throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

newKineticParameterInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

copyKineticParameterInstance

public uk.ac.ebi.interfaces.sptr.KineticParameter copyKineticParameterInstance(uk.ac.ebi.interfaces.sptr.KineticParameter kineticParameter)
                                                                        throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

copyKineticParameterInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

newMaximumVelocityInstance

public uk.ac.ebi.interfaces.sptr.MaximumVelocity newMaximumVelocityInstance()
                                                                     throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

newMaximumVelocityInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

copyMaximumVelocityInstance

public uk.ac.ebi.interfaces.sptr.MaximumVelocity copyMaximumVelocityInstance(uk.ac.ebi.interfaces.sptr.MaximumVelocity maximumVelocity)
                                                                      throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

copyMaximumVelocityInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

newMichaelisConstantInstance

public uk.ac.ebi.interfaces.sptr.MichaelisConstant newMichaelisConstantInstance()
                                                                         throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

newMichaelisConstantInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

copyMichaelisConstantInstance

public uk.ac.ebi.interfaces.sptr.MichaelisConstant copyMichaelisConstantInstance(uk.ac.ebi.interfaces.sptr.MichaelisConstant michaelisConstant)
                                                                          throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

copyMichaelisConstantInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

newMassSpectrometryRangeInstance

public uk.ac.ebi.interfaces.sptr.MassSpectrometryRange newMassSpectrometryRangeInstance()
                                                                                 throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

newMassSpectrometryRangeInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException

copyMassSpectrometryRangeInstance

public uk.ac.ebi.interfaces.sptr.MassSpectrometryRange copyMassSpectrometryRangeInstance(uk.ac.ebi.interfaces.sptr.MassSpectrometryRange massSpectrometryRange)
                                                                                  throws uk.ac.ebi.interfaces.sptr.SPTRException

Specified by:

copyMassSpectrometryRangeInstance in class uk.ac.ebi.interfaces.Factory

Throws:

uk.ac.ebi.interfaces.sptr.SPTRException