The following document contains the results of Checkstyle. 
| Rules | Violations | Severity |
|---|---|---|
JavadocPackage
| 2 |  Error |
| NewlineAtEndOfFile | 0 | Error |
| Translation | 0 | Error |
| FileLength | 0 | Error |
FileTabCharacter
| 497 | Error |
RegexpSingleline
| 44 | Error |
| JavadocMethod | 402 | Error |
| JavadocType | 2 | Error |
| JavadocVariable | 157 | Error |
| JavadocStyle | 1 | Error |
| ConstantName | 0 | Error |
| LocalFinalVariableName | 0 | Error |
| LocalVariableName | 0 | Error |
| MemberName | 0 | Error |
| MethodName | 0 | Error |
| PackageName | 0 | Error |
| ParameterName | 0 | Error |
| StaticVariableName | 4 | Error |
| TypeName | 0 | Error |
| AvoidStarImport | 2 | Error |
| IllegalImport | 0 | Error |
| RedundantImport | 0 | Error |
| UnusedImports | 1 | Error |
| LineLength | 590 | Error |
| MethodLength | 0 | Error |
| ParameterNumber | 2 | Error |
| EmptyForIteratorPad | 0 | Error |
| MethodParamPad | 22 | Error |
| NoWhitespaceAfter | 0 | Error |
| NoWhitespaceBefore | 0 | Error |
| OperatorWrap | 46 | Error |
| ParenPad | 28 | Error |
| TypecastParenPad | 0 | Error |
| WhitespaceAfter | 0 | Error |
| WhitespaceAround | 167 | Error |
| ModifierOrder | 1 | Error |
| RedundantModifier | 3 | Error |
| AvoidNestedBlocks | 0 | Error |
| EmptyBlock | 2 | Error |
| LeftCurly | 0 | Error |
| NeedBraces | 444 | Error |
| RightCurly | 0 | Error |
| AvoidInlineConditionals | 197 | Error |
| EmptyStatement | 0 | Error |
| EqualsHashCode | 0 | Error |
| HiddenField | 134 | Error |
| IllegalInstantiation | 0 | Error |
| InnerAssignment | 0 | Error |
| MagicNumber | 88 | Error |
| MissingSwitchDefault | 6 | Error |
| RedundantThrows | 1 | Error |
| SimplifyBooleanExpression | 0 | Error |
| SimplifyBooleanReturn | 0 | Error |
| DesignForExtension | 253 | Error |
| FinalClass | 12 | Error |
| HideUtilityClassConstructor | 0 | Error |
| InterfaceIsType | 0 | Error |
| VisibilityModifier | 17 | Error |
| ArrayTypeStyle | 0 | Error |
| FinalParameters | 371 | Error |
| TodoComment | 8 | Error |
| UpperEll | 0 | Error |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 98). | 14 |
| Line is longer than 80 characters (found 120). | 15 |
| Variable 'id' must be private and have accessor methods. | 17 |
| Unused @throws tag for 'NullPointerException'. | 30 |
| Unused @throws tag for 'IllegalArgumentException'. | 31 |
| Parameter id should be final. | 33 |
| 'id' hides a field. | 33 |
| 'if' construct must use '{}'s. | 34 |
| 'if' construct must use '{}'s. | 35 |
| Line is longer than 80 characters (found 96). | 35 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 39 |
| Missing a Javadoc comment. | 39 |
| Parameter o should be final. | 39 |
| 'if' construct must use '{}'s. | 40 |
| 'if' construct must use '{}'s. | 41 |
| 'if' construct must use '{}'s. | 45 |
| Line is longer than 80 characters (found 89). | 45 |
| Avoid inline conditionals. | 45 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 50 |
| Missing a Javadoc comment. | 50 |
| Avoid inline conditionals. | 51 |
| Method 'getId' is not designed for extension - needs to be abstract, final or empty. | 56 |
| Missing a Javadoc comment. | 56 |
| Violation | Message | Line |
|---|---|---|
| Class EnzymeNameQualifierConstant should be declared as final. | 11 |
| Line is longer than 80 characters (found 97). | 13 |
| Missing a Javadoc comment. | 13 |
| Line is longer than 80 characters (found 102). | 14 |
| Missing a Javadoc comment. | 14 |
| Line is longer than 80 characters (found 101). | 15 |
| Missing a Javadoc comment. | 15 |
| Line is longer than 80 characters (found 100). | 16 |
| Missing a Javadoc comment. | 16 |
| Line is longer than 80 characters (found 100). | 17 |
| Missing a Javadoc comment. | 17 |
| Line is longer than 80 characters (found 101). | 18 |
| Missing a Javadoc comment. | 18 |
| Missing a Javadoc comment. | 20 |
| Line is longer than 80 characters (found 96). | 23 |
| Line is longer than 80 characters (found 85). | 27 |
| Unused @throws tag for 'NullPointerException'. | 27 |
| Unused @throws tag for 'IllegalArgumentException'. | 28 |
| Parameter qualifier should be final. | 30 |
| 'if' construct must use '{}'s. | 31 |
| Line is longer than 80 characters (found 101). | 31 |
| 'if' construct must use '{}'s. | 33 |
| Line is longer than 80 characters (found 81). | 33 |
| 'if' construct must use '{}'s. | 34 |
| 'if' construct must use '{}'s. | 35 |
| 'if' construct must use '{}'s. | 36 |
| 'if' construct must use '{}'s. | 37 |
| 'if' construct must use '{}'s. | 38 |
| Line contains a tab character. | 39 |
| Parameter qualifier should be final. | 47 |
| 'qualifier' hides a field. | 47 |
| Parameter o should be final. | 57 |
| 'if' construct must use '{}'s. | 58 |
| 'if' construct must use '{}'s. | 59 |
| Line is longer than 80 characters (found 100). | 61 |
| 'if' construct must use '{}'s. | 63 |
| Line is longer than 80 characters (found 147). | 63 |
| Avoid inline conditionals. | 63 |
| Avoid inline conditionals. | 74 |
| Comment matches to-do format 'TODO:'. | 87 |
| Line is longer than 80 characters (found 88). | 88 |
| Line is longer than 80 characters (found 85). | 90 |
| Parameter name should be final. | 94 |
| 'if' construct must use '{}'s. | 95 |
| 'if' is not followed by whitespace. | 95 |
| 'if' construct must use '{}'s. | 96 |
| 'if' is not followed by whitespace. | 96 |
| 'if' construct must use '{}'s. | 97 |
| 'if' is not followed by whitespace. | 97 |
| 'if' construct must use '{}'s. | 98 |
| 'if' is not followed by whitespace. | 98 |
| 'if' construct must use '{}'s. | 99 |
| 'if' is not followed by whitespace. | 99 |
| Comment matches to-do format 'TODO:'. | 104 |
| Line is longer than 80 characters (found 85). | 107 |
| Parameter name should be final. | 111 |
| 'if' construct must use '{}'s. | 112 |
| 'if' is not followed by whitespace. | 112 |
| 'if' construct must use '{}'s. | 113 |
| 'if' is not followed by whitespace. | 113 |
| 'if' construct must use '{}'s. | 114 |
| Line is longer than 80 characters (found 84). | 114 |
| 'if' is not followed by whitespace. | 114 |
| '+' is not preceded with whitespace. | 114 |
| '+' is not followed by whitespace. | 114 |
| '+' is not preceded with whitespace. | 114 |
| '+' is not followed by whitespace. | 114 |
| 'if' construct must use '{}'s. | 115 |
| 'if' is not followed by whitespace. | 115 |
| 'if' construct must use '{}'s. | 116 |
| 'if' is not followed by whitespace. | 116 |
| Line has trailing spaces. | 119 |
| Missing a Javadoc comment. | 120 |
| '{' is not preceded with whitespace. | 120 |
| 'if' construct must use '{}'s. | 121 |
| Line contains a tab character. | 121 |
| 'if' is not followed by whitespace. | 121 |
| 'if' construct must use '{}'s. | 122 |
| Line contains a tab character. | 122 |
| 'if' is not followed by whitespace. | 122 |
| 'if' construct must use '{}'s. | 123 |
| Line contains a tab character. | 123 |
| 'if' is not followed by whitespace. | 123 |
| 'if' construct must use '{}'s. | 124 |
| Line contains a tab character. | 124 |
| 'if' is not followed by whitespace. | 124 |
| 'if' construct must use '{}'s. | 125 |
| Line contains a tab character. | 125 |
| 'if' is not followed by whitespace. | 125 |
| Line contains a tab character. | 126 |
| Comment matches to-do format 'TODO:'. | 130 |
| Line is longer than 80 characters (found 94). | 139 |
| Comment matches to-do format 'TODO:'. | 147 |
| 'if' is not followed by whitespace. | 156 |
| Line is longer than 80 characters (found 87). | 157 |
| 'if' is not followed by whitespace. | 165 |
| Line is longer than 80 characters (found 85). | 166 |
| 'if' is not followed by whitespace. | 174 |
| Line is longer than 80 characters (found 83). | 175 |
| 'if' is not followed by whitespace. | 183 |
| Line is longer than 80 characters (found 84). | 184 |
| 'if' is not followed by whitespace. | 192 |
| Line is longer than 80 characters (found 84). | 193 |
| 'if' is not followed by whitespace. | 201 |
| Line is longer than 80 characters (found 84). | 202 |
| Violation | Message | Line |
|---|---|---|
| Class EnzymeNameTypeConstant should be declared as final. | 11 |
| Missing a Javadoc comment. | 12 |
| Line is longer than 80 characters (found 87). | 14 |
| Missing a Javadoc comment. | 14 |
| Line is longer than 80 characters (found 93). | 15 |
| Missing a Javadoc comment. | 15 |
| Line is longer than 80 characters (found 97). | 16 |
| Missing a Javadoc comment. | 16 |
| Line is longer than 80 characters (found 92). | 17 |
| Missing a Javadoc comment. | 17 |
| Line is longer than 80 characters (found 86). | 20 |
| Unused @throws tag for 'NullPointerException'. | 24 |
| Unused @throws tag for 'IllegalArgumentException'. | 25 |
| Parameter type should be final. | 27 |
| 'if' construct must use '{}'s. | 28 |
| Line is longer than 80 characters (found 91). | 28 |
| 'if' construct must use '{}'s. | 30 |
| 'if' construct must use '{}'s. | 31 |
| 'if' construct must use '{}'s. | 32 |
| 'if' construct must use '{}'s. | 33 |
| Line contains a tab character. | 34 |
| Parameter nameTypeCode should be final. | 42 |
| 'nameTypeCode' hides a field. | 42 |
| Parameter o should be final. | 52 |
| 'if' construct must use '{}'s. | 53 |
| 'if' construct must use '{}'s. | 54 |
| 'if' construct must use '{}'s. | 58 |
| Violation | Message | Line |
|---|---|---|
| Class EnzymeSourceConstant should be declared as final. | 13 |
| Missing a Javadoc comment. | 14 |
| Line is longer than 80 characters (found 85). | 16 |
| Missing a Javadoc comment. | 16 |
| Line is longer than 80 characters (found 85). | 17 |
| Missing a Javadoc comment. | 17 |
| Line is longer than 80 characters (found 81). | 18 |
| Missing a Javadoc comment. | 18 |
| Line is longer than 80 characters (found 87). | 19 |
| Missing a Javadoc comment. | 19 |
| Line is longer than 80 characters (found 87). | 20 |
| Missing a Javadoc comment. | 20 |
| Parameter sourceCode should be final. | 27 |
| 'sourceCode' hides a field. | 27 |
| Line is longer than 80 characters (found 86). | 38 |
| Unused @throws tag for 'NullPointerException'. | 38 |
| Unused @throws tag for 'IllegalArgumentException'. | 39 |
| Parameter sourceCode should be final. | 41 |
| 'if' construct must use '{}'s. | 42 |
| Line is longer than 80 characters (found 103). | 42 |
| 'if' construct must use '{}'s. | 43 |
| 'if' construct must use '{}'s. | 44 |
| 'if' construct must use '{}'s. | 45 |
| 'if' construct must use '{}'s. | 46 |
| Line is longer than 80 characters (found 86). | 47 |
| Line contains a tab character. | 47 |
| Parameter o should be final. | 56 |
| 'if' construct must use '{}'s. | 57 |
| 'if' construct must use '{}'s. | 58 |
| 'if' construct must use '{}'s. | 62 |
| Expected an @return tag. | 90 |
| Parameter source should be final. | 90 |
| Expected @param tag for 'source'. | 90 |
| 'if' construct must use '{}'s. | 92 |
| 'if' is not followed by whitespace. | 92 |
| 'if' construct must use '{}'s. | 93 |
| 'if' is not followed by whitespace. | 93 |
| 'if' construct must use '{}'s. | 94 |
| 'if' is not followed by whitespace. | 94 |
| 'if' construct must use '{}'s. | 95 |
| 'if' is not followed by whitespace. | 95 |
| Expected an @return tag. | 103 |
| 'if' construct must use '{}'s. | 104 |
| 'if' is not followed by whitespace. | 104 |
| 'if' construct must use '{}'s. | 105 |
| 'if' is not followed by whitespace. | 105 |
| 'if' construct must use '{}'s. | 106 |
| 'if' is not followed by whitespace. | 106 |
| 'if' construct must use '{}'s. | 107 |
| 'if' is not followed by whitespace. | 107 |
| Violation | Message | Line |
|---|---|---|
| Class EnzymeStatusConstant should be declared as final. | 13 |
| Missing a Javadoc comment. | 14 |
| Missing a Javadoc comment. | 16 |
| Line is longer than 80 characters (found 97). | 18 |
| Missing a Javadoc comment. | 18 |
| Line is longer than 80 characters (found 99). | 19 |
| Missing a Javadoc comment. | 19 |
| Line is longer than 80 characters (found 97). | 20 |
| Missing a Javadoc comment. | 20 |
| Line is longer than 80 characters (found 86). | 29 |
| Unused @throws tag for 'NullPointerException'. | 29 |
| Unused @throws tag for 'IllegalArgumentException'. | 30 |
| Parameter statusCode should be final. | 32 |
| 'if' construct must use '{}'s. | 33 |
| Line is longer than 80 characters (found 103). | 33 |
| 'if' construct must use '{}'s. | 34 |
| 'if' construct must use '{}'s. | 35 |
| 'if' construct must use '{}'s. | 36 |
| Line is longer than 80 characters (found 81). | 37 |
| Line contains a tab character. | 37 |
| Parameter statusCode should be final. | 45 |
| 'statusCode' hides a field. | 45 |
| Parameter text should be final. | 45 |
| 'text' hides a field. | 45 |
| Expected @param tag for 'text'. | 45 |
| Parameter o should be final. | 56 |
| 'if' construct must use '{}'s. | 57 |
| 'if' construct must use '{}'s. | 58 |
| 'if' construct must use '{}'s. | 62 |
| Line is longer than 80 characters (found 121). | 62 |
| Avoid inline conditionals. | 62 |
| 'if' construct must use '{}'s. | 63 |
| Line is longer than 80 characters (found 97). | 63 |
| Avoid inline conditionals. | 63 |
| Avoid inline conditionals. | 75 |
| '29' is a magic number. | 76 |
| Avoid inline conditionals. | 76 |
| Violation | Message | Line |
|---|---|---|
| Class EnzymeViewConstant should be declared as final. | 20 |
| Missing a Javadoc comment. | 21 |
| Line is longer than 80 characters (found 81). | 23 |
| Missing a Javadoc comment. | 23 |
| Line is longer than 80 characters (found 81). | 24 |
| Missing a Javadoc comment. | 24 |
| Missing a Javadoc comment. | 25 |
| Line is longer than 80 characters (found 89). | 26 |
| Missing a Javadoc comment. | 26 |
| Line is longer than 80 characters (found 95). | 27 |
| Missing a Javadoc comment. | 27 |
| Line is longer than 80 characters (found 91). | 28 |
| Missing a Javadoc comment. | 28 |
| Line is longer than 80 characters (found 83). | 29 |
| Missing a Javadoc comment. | 29 |
| Line is longer than 80 characters (found 118). | 31 |
| Missing a Javadoc comment. | 31 |
| Missing a Javadoc comment. | 32 |
| Line contains a tab character. | 33 |
| Parameter viewCode should be final. | 40 |
| 'viewCode' hides a field. | 40 |
| Line is longer than 80 characters (found 84). | 51 |
| Unused @throws tag for 'NullPointerException'. | 51 |
| Unused @throws tag for 'IllegalArgumentException'. | 52 |
| Parameter viewCode should be final. | 54 |
| 'if' construct must use '{}'s. | 55 |
| Line is longer than 80 characters (found 99). | 55 |
| 'if' construct must use '{}'s. | 56 |
| 'if' construct must use '{}'s. | 57 |
| 'if' construct must use '{}'s. | 58 |
| 'if' construct must use '{}'s. | 59 |
| 'if' construct must use '{}'s. | 60 |
| 'if' construct must use '{}'s. | 61 |
| Line is longer than 80 characters (found 84). | 62 |
| Line contains a tab character. | 62 |
| Missing a Javadoc comment. | 65 |
| Line is longer than 80 characters (found 84). | 66 |
| Missing a Javadoc comment. | 69 |
| Line is longer than 80 characters (found 88). | 70 |
| Missing a Javadoc comment. | 73 |
| Missing a Javadoc comment. | 77 |
| Parameter viewCode should be final. | 77 |
| Line is longer than 80 characters (found 82). | 78 |
| '||' should be on a new line. | 78 |
| Line is longer than 80 characters (found 84). | 79 |
| Missing a Javadoc comment. | 82 |
| Parameter viewCode should be final. | 82 |
| Line is longer than 80 characters (found 84). | 83 |
| '||' should be on a new line. | 83 |
| Line is longer than 80 characters (found 86). | 84 |
| Missing a Javadoc comment. | 87 |
| Parameter viewCode should be final. | 87 |
| Line is longer than 80 characters (found 88). | 88 |
| '||' should be on a new line. | 88 |
| Line has trailing spaces. | 91 |
| Missing a Javadoc comment. | 92 |
| Parameter theView should be final. | 92 |
| Parameter o should be final. | 92 |
| '{' is not preceded with whitespace. | 92 |
| Line contains a tab character. | 93 |
| Line contains a tab character. | 94 |
| '{' is not preceded with whitespace. | 94 |
| Line contains a tab character. | 95 |
| Line contains a tab character. | 96 |
| '{' is not preceded with whitespace. | 96 |
| Line is longer than 80 characters (found 90). | 97 |
| Line contains a tab character. | 97 |
| Line contains a tab character. | 98 |
| Line contains a tab character. | 99 |
| Line contains a tab character. | 100 |
| '{' is not preceded with whitespace. | 100 |
| Line contains a tab character. | 101 |
| 'if' construct must use '{}'s. | 102 |
| Line contains a tab character. | 102 |
| 'else' construct must use '{}'s. | 103 |
| Line contains a tab character. | 103 |
| Line contains a tab character. | 104 |
| Line contains a tab character. | 105 |
| Line contains a tab character. | 106 |
| Line is longer than 80 characters (found 104). | 107 |
| Line contains a tab character. | 107 |
| Parameter o should be final. | 117 |
| 'if' construct must use '{}'s. | 118 |
| 'if' construct must use '{}'s. | 119 |
| 'if' construct must use '{}'s. | 123 |
| Expected an @return tag. | 153 |
| Parameter view should be final. | 153 |
| Expected @param tag for 'view'. | 153 |
| 'if' construct must use '{}'s. | 155 |
| 'if' is not followed by whitespace. | 155 |
| 'if' construct must use '{}'s. | 156 |
| 'if' is not followed by whitespace. | 156 |
| 'if' construct must use '{}'s. | 157 |
| 'if' is not followed by whitespace. | 157 |
| 'if' construct must use '{}'s. | 158 |
| 'if' is not followed by whitespace. | 158 |
| 'if' construct must use '{}'s. | 159 |
| 'if' is not followed by whitespace. | 159 |
| 'if' construct must use '{}'s. | 160 |
| 'if' is not followed by whitespace. | 160 |
| Expected an @return tag. | 168 |
| 'if' construct must use '{}'s. | 169 |
| 'if' is not followed by whitespace. | 169 |
| 'if' construct must use '{}'s. | 170 |
| 'if' is not followed by whitespace. | 170 |
| 'if' construct must use '{}'s. | 171 |
| 'if' is not followed by whitespace. | 171 |
| 'if' construct must use '{}'s. | 172 |
| 'if' is not followed by whitespace. | 172 |
| 'if' construct must use '{}'s. | 173 |
| 'if' is not followed by whitespace. | 173 |
| 'if' construct must use '{}'s. | 174 |
| 'if' is not followed by whitespace. | 174 |
| Expected an @return tag. | 183 |
| Parameter view should be final. | 183 |
| Expected @param tag for 'view'. | 183 |
| 'if' construct must use '{}'s. | 185 |
| 'if' is not followed by whitespace. | 185 |
| 'if' construct must use '{}'s. | 186 |
| 'if' is not followed by whitespace. | 186 |
| 'if' construct must use '{}'s. | 187 |
| 'if' is not followed by whitespace. | 187 |
| 'if' construct must use '{}'s. | 188 |
| Line is longer than 80 characters (found 152). | 188 |
| 'if' is not followed by whitespace. | 188 |
| 'if' construct must use '{}'s. | 189 |
| Line is longer than 80 characters (found 118). | 189 |
| 'if' is not followed by whitespace. | 189 |
| 'if' construct must use '{}'s. | 190 |
| Line is longer than 80 characters (found 122). | 190 |
| 'if' is not followed by whitespace. | 190 |
| Line is longer than 80 characters (found 87). | 191 |
| Expected an @return tag. | 198 |
| 'if' construct must use '{}'s. | 199 |
| 'if' is not followed by whitespace. | 199 |
| 'if' construct must use '{}'s. | 200 |
| 'if' is not followed by whitespace. | 200 |
| 'if' construct must use '{}'s. | 201 |
| 'if' is not followed by whitespace. | 201 |
| 'if' construct must use '{}'s. | 202 |
| Line is longer than 80 characters (found 144). | 202 |
| 'if' is not followed by whitespace. | 202 |
| 'if' construct must use '{}'s. | 203 |
| Line is longer than 80 characters (found 110). | 203 |
| 'if' is not followed by whitespace. | 203 |
| 'if' construct must use '{}'s. | 204 |
| Line is longer than 80 characters (found 114). | 204 |
| 'if' is not followed by whitespace. | 204 |
| Line is longer than 80 characters (found 87). | 205 |
| Violation | Message | Line |
|---|---|---|
| Line contains a tab character. | 10 |
| Missing a Javadoc comment. | 10 |
| Line contains a tab character. | 11 |
| Missing a Javadoc comment. | 11 |
| Line contains a tab character. | 12 |
| Missing a Javadoc comment. | 12 |
| Line contains a tab character. | 13 |
| Missing a Javadoc comment. | 13 |
| Line has trailing spaces. | 14 |
| Line contains a tab character. | 14 |
| Line contains a tab character. | 15 |
| Line contains a tab character. | 16 |
| Line contains a tab character. | 17 |
| Line contains a tab character. | 18 |
| Line has trailing spaces. | 19 |
| Line contains a tab character. | 19 |
| Line contains a tab character. | 20 |
| Line contains a tab character. | 21 |
| Line contains a tab character. | 22 |
| Line contains a tab character. | 23 |
| Line has trailing spaces. | 24 |
| Line contains a tab character. | 24 |
| Line contains a tab character. | 25 |
| Missing a Javadoc comment. | 25 |
| Parameter code should be final. | 25 |
| 'code' hides a field. | 25 |
| Parameter attribute should be final. | 25 |
| 'attribute' hides a field. | 25 |
| '{' is not preceded with whitespace. | 25 |
| Line contains a tab character. | 26 |
| Line contains a tab character. | 27 |
| Line contains a tab character. | 28 |
| Line has trailing spaces. | 29 |
| Line contains a tab character. | 29 |
| Line contains a tab character. | 30 |
| Missing a Javadoc comment. | 30 |
| Parameter code should be final. | 30 |
| 'code' hides a field. | 30 |
| '{' is not preceded with whitespace. | 30 |
| Line contains a tab character. | 31 |
| '{' is not preceded with whitespace. | 31 |
| 'if' construct must use '{}'s. | 32 |
| Line contains a tab character. | 32 |
| Line contains a tab character. | 33 |
| Line contains a tab character. | 34 |
| Line contains a tab character. | 35 |
| Line contains a tab character. | 37 |
| Missing a Javadoc comment. | 37 |
| Line contains a tab character. | 38 |
| Line contains a tab character. | 39 |
| Line contains a tab character. | 41 |
| Missing a Javadoc comment. | 41 |
| Line contains a tab character. | 42 |
| Line contains a tab character. | 43 |
| Violation | Message | Line |
|---|---|---|
| Class EventConstant should be declared as final. | 12 |
| Missing a Javadoc comment. | 13 |
| Missing a Javadoc comment. | 15 |
| Line is longer than 80 characters (found 83). | 17 |
| Missing a Javadoc comment. | 17 |
| Line is longer than 80 characters (found 87). | 18 |
| Missing a Javadoc comment. | 18 |
| Line is longer than 80 characters (found 88). | 19 |
| Missing a Javadoc comment. | 19 |
| Line is longer than 80 characters (found 83). | 20 |
| Missing a Javadoc comment. | 20 |
| Parameter eventCode should be final. | 28 |
| 'eventCode' hides a field. | 28 |
| Parameter eventFullName should be final. | 28 |
| 'eventFullName' hides a field. | 28 |
| Unused @throws tag for 'IllegalArgumentException'. | 40 |
| Parameter eventCode should be final. | 42 |
| 'if' construct must use '{}'s. | 43 |
| 'if' construct must use '{}'s. | 44 |
| 'if' construct must use '{}'s. | 45 |
| 'if' construct must use '{}'s. | 46 |
| Line contains a tab character. | 47 |
| Parameter o should be final. | 56 |
| 'if' construct must use '{}'s. | 57 |
| 'if' construct must use '{}'s. | 58 |
| 'if' construct must use '{}'s. | 62 |
| Line is longer than 80 characters (found 121). | 62 |
| Avoid inline conditionals. | 62 |
| 'if' construct must use '{}'s. | 63 |
| Line is longer than 80 characters (found 137). | 63 |
| Avoid inline conditionals. | 63 |
| Avoid inline conditionals. | 75 |
| Line is longer than 80 characters (found 82). | 76 |
| '29' is a magic number. | 76 |
| Avoid inline conditionals. | 76 |
| Violation | Message | Line |
|---|---|---|
| Unused import - uk.ac.ebi.intenz.domain.enzyme.EnzymeCommissionNumber.Type. | 3 |
| Line contains a tab character. | 12 |
| Line contains a tab character. | 13 |
| Line contains a tab character. | 14 |
| Line contains a tab character. | 15 |
| Line contains a tab character. | 16 |
| Line contains a tab character. | 17 |
| Missing a Javadoc comment. | 17 |
| Line contains a tab character. | 18 |
| Missing a Javadoc comment. | 18 |
| Line contains a tab character. | 19 |
| Missing a Javadoc comment. | 19 |
| Line has trailing spaces. | 20 |
| Line contains a tab character. | 20 |
| Line contains a tab character. | 21 |
| Missing a Javadoc comment. | 21 |
| Line has trailing spaces. | 22 |
| Line contains a tab character. | 22 |
| Line contains a tab character. | 23 |
| Missing a Javadoc comment. | 23 |
| Parameter code should be final. | 23 |
| 'code' hides a field. | 23 |
| '{' is not preceded with whitespace. | 23 |
| Line has trailing spaces. | 24 |
| Line contains a tab character. | 24 |
| Line contains a tab character. | 25 |
| Missing a Javadoc comment. | 25 |
| '{' is not preceded with whitespace. | 25 |
| Line has trailing spaces. | 26 |
| Line contains a tab character. | 26 |
| Line contains a tab character. | 27 |
| Missing a Javadoc comment. | 27 |
| Parameter code should be final. | 27 |
| '{' is not preceded with whitespace. | 27 |
| Line contains a tab character. | 28 |
| '{' is not preceded with whitespace. | 28 |
| 'if' construct must use '{}'s. | 29 |
| Line contains a tab character. | 29 |
| Line contains a tab character. | 30 |
| Line contains a tab character. | 31 |
| Line contains a tab character. | 32 |
| Line has trailing spaces. | 33 |
| Line contains a tab character. | 33 |
| Violation | Message | Line |
|---|---|---|
| Line contains a tab character. | 13 |
| Missing a Javadoc comment. | 13 |
| Line contains a tab character. | 14 |
| Missing a Javadoc comment. | 14 |
| Line contains a tab character. | 15 |
| Missing a Javadoc comment. | 15 |
| Line has trailing spaces. | 16 |
| Line contains a tab character. | 16 |
| Line contains a tab character. | 17 |
| Missing a Javadoc comment. | 17 |
| Line contains a tab character. | 19 |
| Missing a Javadoc comment. | 19 |
| Parameter txt should be final. | 19 |
| 'txt' hides a field. | 19 |
| '{' is not preceded with whitespace. | 19 |
| Line contains a tab character. | 21 |
| Missing a Javadoc comment. | 21 |
| Line contains a tab character. | 22 |
| Line contains a tab character. | 23 |
| Line has trailing spaces. | 25 |
| Line contains a tab character. | 25 |
| Violation | Message | Line |
|---|---|---|
| Using the '.*' form of import should be avoided - java.util.*. | 3 |
| Class XrefDatabaseConstant should be declared as final. | 15 |
| Missing a Javadoc comment. | 16 |
| Missing a Javadoc comment. | 18 |
| Missing a Javadoc comment. | 20 |
| Missing a Javadoc comment. | 22 |
| Line is longer than 80 characters (found 97). | 24 |
| Missing a Javadoc comment. | 24 |
| Line is longer than 80 characters (found 87). | 25 |
| Line is longer than 80 characters (found 81). | 29 |
| Line contains a tab character. | 33 |
| Line is longer than 80 characters (found 85). | 34 |
| Line contains a tab character. | 34 |
| Missing a Javadoc comment. | 36 |
| Line contains a tab character. | 37 |
| Line is longer than 80 characters (found 91). | 38 |
| Line contains a tab character. | 38 |
| Line has trailing spaces. | 39 |
| Line is longer than 80 characters (found 81). | 41 |
| Line is longer than 80 characters (found 99). | 43 |
| Line is longer than 80 characters (found 121). | 46 |
| Line contains a tab character. | 50 |
| Line contains a tab character. | 51 |
| Line is longer than 80 characters (found 101). | 56 |
| Line is longer than 80 characters (found 86). | 62 |
| Line is longer than 80 characters (found 125). | 63 |
| Line is longer than 80 characters (found 84). | 64 |
| Line is longer than 80 characters (found 88). | 68 |
| Line is longer than 80 characters (found 87). | 71 |
| Line is longer than 80 characters (found 95). | 72 |
| Line is longer than 80 characters (found 114). | 75 |
| Line is longer than 80 characters (found 97). | 78 |
| Line is longer than 80 characters (found 158). | 79 |
| Line is longer than 80 characters (found 111). | 82 |
| Line is longer than 80 characters (found 92). | 83 |
| Line is longer than 80 characters (found 90). | 85 |
| Line is longer than 80 characters (found 132). | 86 |
| Line is longer than 80 characters (found 83). | 89 |
| Line is longer than 80 characters (found 108). | 91 |
| Line is longer than 80 characters (found 106). | 94 |
| Line is longer than 80 characters (found 150). | 96 |
| Line is longer than 80 characters (found 117). | 99 |
| Line is longer than 80 characters (found 99). | 102 |
| Line is longer than 80 characters (found 118). | 103 |
| Line is longer than 80 characters (found 91). | 106 |
| Line is longer than 80 characters (found 106). | 108 |
| Line is longer than 80 characters (found 121). | 109 |
| Line is longer than 80 characters (found 93). | 112 |
| Line is longer than 80 characters (found 114). | 115 |
| Line is longer than 80 characters (found 94). | 118 |
| Line is longer than 80 characters (found 144). | 119 |
| Line is longer than 80 characters (found 97). | 121 |
| Missing a Javadoc comment. | 121 |
| Line is longer than 80 characters (found 88). | 122 |
| Line is longer than 80 characters (found 112). | 125 |
| Line is longer than 80 characters (found 90). | 130 |
| Line is longer than 80 characters (found 142). | 131 |
| Line is longer than 80 characters (found 87). | 136 |
| Line is longer than 80 characters (found 141). | 137 |
| Line is longer than 80 characters (found 90). | 140 |
| Line is longer than 80 characters (found 183). | 142 |
| Missing a Javadoc comment. | 150 |
| Missing a Javadoc comment. | 154 |
| Name 'PRIVATE_LINK_SOURCES' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 154 |
| Missing a Javadoc comment. | 178 |
| Name 'PRIVATE_UNIQUE_LINK_SOURCES' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 178 |
| Line contains a tab character. | 196 |
| Line is longer than 80 characters (found 117). | 202 |
| Line contains a tab character. | 202 |
| Line is longer than 80 characters (found 99). | 211 |
| Parameter sourceCode should be final. | 211 |
| Parameter displayName should be final. | 211 |
| 'displayName' hides a field. | 211 |
| Parameter url should be final. | 211 |
| 'url' hides a field. | 211 |
| Parameter isXref should be final. | 211 |
| 'isXref' hides a field. | 211 |
| Expected @param tag for 'isXref'. | 211 |
| Line is longer than 80 characters (found 88). | 218 |
| Missing a Javadoc comment. | 218 |
| Parameter sourceCode should be final. | 218 |
| 'if' construct must use '{}'s. | 219 |
| Line is longer than 80 characters (found 105). | 219 |
| 'if' construct must use '{}'s. | 220 |
| Line is longer than 80 characters (found 113). | 220 |
| Line is longer than 80 characters (found 95). | 221 |
| 'if' construct must use '{}'s. | 223 |
| Line is longer than 80 characters (found 97). | 223 |
| Line is longer than 80 characters (found 113). | 225 |
| Missing a Javadoc comment. | 228 |
| Parameter linkSourceConstant should be final. | 228 |
| Line is longer than 80 characters (found 82). | 229 |
| Line is longer than 80 characters (found 84). | 237 |
| Unused @throws tag for 'NullPointerException'. | 237 |
| Parameter sourceCode should be final. | 239 |
| 'if' construct must use '{}'s. | 240 |
| Line is longer than 80 characters (found 105). | 240 |
| Line is longer than 80 characters (found 95). | 241 |
| 'if' construct must use '{}'s. | 243 |
| Missing a Javadoc comment. | 248 |
| Parameter databaseName should be final. | 248 |
| 'if' construct must use '{}'s. | 249 |
| Line is longer than 80 characters (found 107). | 249 |
| Missing a Javadoc comment. | 254 |
| Parameter databaseCode should be final. | 254 |
| 'if' construct must use '{}'s. | 255 |
| Line is longer than 80 characters (found 107). | 255 |
| 'if' construct must use '{}'s. | 256 |
| Line is longer than 80 characters (found 130). | 256 |
| Line is longer than 80 characters (found 93). | 257 |
| 'if' construct must use '{}'s. | 259 |
| Line is longer than 80 characters (found 86). | 267 |
| Line is longer than 80 characters (found 88). | 271 |
| Unused @throws tag for 'NullPointerException'. | 271 |
| Unused @throws tag for 'IllegalArgumentException'. | 272 |
| Parameter sourceCode should be final. | 274 |
| 'if' construct must use '{}'s. | 275 |
| 'if' construct must use '{}'s. | 276 |
| Line is longer than 80 characters (found 128). | 276 |
| Line is longer than 80 characters (found 95). | 277 |
| 'if' construct must use '{}'s. | 279 |
| Line is longer than 80 characters (found 94). | 279 |
| Parameter o should be final. | 290 |
| 'if' construct must use '{}'s. | 291 |
| 'if' construct must use '{}'s. | 292 |
| 'if' construct must use '{}'s. | 296 |
| Line is longer than 80 characters (found 125). | 296 |
| Avoid inline conditionals. | 296 |
| '!=' should be on a new line. | 296 |
| Line is longer than 80 characters (found 108). | 297 |
| 'if' construct must use '{}'s. | 298 |
| Line is longer than 80 characters (found 109). | 298 |
| Avoid inline conditionals. | 298 |
| Avoid inline conditionals. | 310 |
| '29' is a magic number. | 311 |
| Avoid inline conditionals. | 311 |
| Line is longer than 80 characters (found 86). | 330 |
| Line is longer than 80 characters (found 88). | 334 |
| Unused @throws tag for 'NullPointerException'. | 334 |
| Unused @throws tag for 'IllegalArgumentException'. | 335 |
| Parameter sourceCode should be final. | 337 |
| 'if' construct must use '{}'s. | 338 |
| Line is longer than 80 characters (found 105). | 338 |
| 'if' construct must use '{}'s. | 339 |
| Line is longer than 80 characters (found 130). | 339 |
| Line is longer than 80 characters (found 95). | 340 |
| 'if' construct must use '{}'s. | 342 |
| Line is longer than 80 characters (found 94). | 342 |
| Line is longer than 80 characters (found 81). | 348 |
| Line is longer than 80 characters (found 84). | 352 |
| Unused @throws tag for 'NullPointerException'. | 352 |
| Parameter sourceCode should be final. | 354 |
| 'if' construct must use '{}'s. | 355 |
| Line is longer than 80 characters (found 105). | 355 |
| 'if' construct must use '{}'s. | 356 |
| Line is longer than 80 characters (found 130). | 356 |
| Line is longer than 80 characters (found 95). | 357 |
| 'if' construct must use '{}'s. | 359 |
| Line is longer than 80 characters (found 102). | 359 |
| Missing a Javadoc comment. | 364 |
| Parameter databaseName should be final. | 364 |
| 'if' construct must use '{}'s. | 365 |
| Line is longer than 80 characters (found 107). | 365 |
| Line is longer than 80 characters (found 95). | 366 |
| 'if' construct must use '{}'s. | 368 |
| Line is longer than 80 characters (found 104). | 368 |
| Line is longer than 80 characters (found 98). | 370 |
| Missing a Javadoc comment. | 373 |
| Missing a Javadoc comment. | 377 |
| Missing a Javadoc comment. | 381 |
| Missing a Javadoc comment. | 385 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 91). | 9 |
| Line is longer than 80 characters (found 101). | 11 |
| Line is longer than 80 characters (found 101). | 12 |
| Missing a Javadoc comment. | 21 |
| Line contains a tab character. | 21 |
| First sentence should end with a period. | 22 |
| Line contains a tab character. | 22 |
| Line contains a tab character. | 23 |
| Line is longer than 80 characters (found 81). | 24 |
| Line contains a tab character. | 24 |
| Line contains a tab character. | 25 |
| Line is longer than 80 characters (found 107). | 26 |
| Line contains a tab character. | 26 |
| Line contains a tab character. | 27 |
| Line is longer than 80 characters (found 102). | 28 |
| Line contains a tab character. | 28 |
| Line contains a tab character. | 29 |
| Line contains a tab character. | 30 |
| Missing a Javadoc comment. | 30 |
| Line contains a tab character. | 31 |
| Missing a Javadoc comment. | 31 |
| Line is longer than 80 characters (found 86). | 32 |
| Line contains a tab character. | 32 |
| Missing a Javadoc comment. | 32 |
| Parameter t should be final. | 32 |
| Parameter c should be final. | 32 |
| '{' is not preceded with whitespace. | 32 |
| Line contains a tab character. | 34 |
| '{' is not preceded with whitespace. | 34 |
| Line contains a tab character. | 35 |
| Missing a Javadoc comment. | 35 |
| '{' is not preceded with whitespace. | 35 |
| Line contains a tab character. | 36 |
| Missing a Javadoc comment. | 36 |
| '{' is not preceded with whitespace. | 36 |
| Line contains a tab character. | 37 |
| Line contains a tab character. | 38 |
| Line contains a tab character. | 39 |
| Line contains a tab character. | 40 |
| Line contains a tab character. | 41 |
| Line contains a tab character. | 42 |
| Line contains a tab character. | 43 |
| Line has trailing spaces. | 44 |
| Missing a Javadoc comment. | 51 |
| Missing a Javadoc comment. | 53 |
| Line has trailing spaces. | 54 |
| Missing a Javadoc comment. | 55 |
| Line is longer than 80 characters (found 84). | 58 |
| Line is longer than 80 characters (found 89). | 61 |
| Unused @throws tag for 'NullPointerException'. | 61 |
| Unused @throws tag for 'IllegalArgumentException'. | 62 |
| Line is longer than 80 characters (found 95). | 65 |
| Parameter cofactorValue should be final. | 65 |
| 'cofactorValue' hides a field. | 65 |
| Parameter source should be final. | 65 |
| 'source' hides a field. | 65 |
| Expected @param tag for 'source'. | 65 |
| Parameter view should be final. | 65 |
| 'view' hides a field. | 65 |
| Expected @param tag for 'view'. | 65 |
| 'if' construct must use '{}'s. | 66 |
| Line is longer than 80 characters (found 109). | 66 |
| 'if' construct must use '{}'s. | 67 |
| Line is longer than 80 characters (found 117). | 67 |
| 'if' construct must use '{}'s. | 68 |
| Line is longer than 80 characters (found 95). | 68 |
| 'if' construct must use '{}'s. | 69 |
| Line is longer than 80 characters (found 91). | 69 |
| Line has trailing spaces. | 74 |
| Missing a Javadoc comment. | 75 |
| Parameter compound should be final. | 75 |
| 'compound' hides a field. | 75 |
| Parameter source should be final. | 75 |
| 'source' hides a field. | 75 |
| Parameter view should be final. | 76 |
| 'view' hides a field. | 76 |
| Line has trailing spaces. | 81 |
| Line is longer than 80 characters (found 82). | 89 |
| Parameter compound should be final. | 89 |
| Expected @param tag for 'compound'. | 89 |
| Parameter source should be final. | 89 |
| Expected @param tag for 'source'. | 89 |
| Parameter view should be final. | 90 |
| Expected @param tag for 'view'. | 90 |
| 'if' construct must use '{}'s. | 91 |
| 'if' construct must use '{}'s. | 93 |
| 'if' construct must use '{}'s. | 95 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 106 |
| Parameter o should be final. | 107 |
| 'if' construct must use '{}'s. | 108 |
| 'if' construct must use '{}'s. | 109 |
| 'if' construct must use '{}'s. | 113 |
| 'if' construct must use '{}'s. | 115 |
| Line is longer than 80 characters (found 83). | 115 |
| Avoid inline conditionals. | 115 |
| 'if' construct must use '{}'s. | 117 |
| Line has trailing spaces. | 117 |
| Avoid inline conditionals. | 117 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 128 |
| Avoid inline conditionals. | 131 |
| '29' is a magic number. | 132 |
| Avoid inline conditionals. | 132 |
| '29' is a magic number. | 133 |
| Avoid inline conditionals. | 133 |
| Line has trailing spaces. | 137 |
| Line is longer than 80 characters (found 84). | 144 |
| Method 'getCofactorValue' is not designed for extension - needs to be abstract, final or empty. | 146 |
| Method 'getSource' is not designed for extension - needs to be abstract, final or empty. | 150 |
| Missing a Javadoc comment. | 150 |
| Method 'getView' is not designed for extension - needs to be abstract, final or empty. | 154 |
| Missing a Javadoc comment. | 154 |
| Method 'getCompound' is not designed for extension - needs to be abstract, final or empty. | 158 |
| Missing a Javadoc comment. | 158 |
| Line contains a tab character. | 162 |
| Method 'toString' is not designed for extension - needs to be abstract, final or empty. | 162 |
| Line contains a tab character. | 163 |
| Line contains a tab character. | 164 |
| Line contains a tab character. | 165 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 8 |
| Redundant 'public' modifier. | 8 |
| Missing a Javadoc comment. | 10 |
| Redundant 'public' modifier. | 10 |
| Violation | Message | Line |
|---|---|---|
| Line contains a tab character. | 9 |
| Missing a Javadoc comment. | 12 |
| Line contains a tab character. | 14 |
| Parameter id should be final. | 15 |
| 'id' hides a field. | 15 |
| Expected @param tag for 'id'. | 15 |
| Parameter comment should be final. | 15 |
| 'comment' hides a field. | 15 |
| Expected @param tag for 'comment'. | 15 |
| '{' is not preceded with whitespace. | 15 |
| Line has trailing spaces. | 19 |
| Missing a Javadoc comment. | 20 |
| Parameter comment should be final. | 20 |
| 'comment' hides a field. | 20 |
| '{' is not preceded with whitespace. | 20 |
| Parameter id should be final. | 29 |
| 'id' hides a field. | 29 |
| Expected @param tag for 'id'. | 29 |
| Parameter comment should be final. | 29 |
| 'comment' hides a field. | 29 |
| Expected @param tag for 'comment'. | 29 |
| '{' is not preceded with whitespace. | 29 |
| '{' is not preceded with whitespace. | 32 |
| Must have at least one statement. | 32 |
| '{' is not followed by whitespace. | 32 |
| '}' is not preceded with whitespace. | 32 |
| Line contains a tab character. | 36 |
| Expected an @return tag. | 37 |
| Parameter id should be final. | 37 |
| Expected @param tag for 'id'. | 37 |
| Parameter comment should be final. | 37 |
| Expected @param tag for 'comment'. | 37 |
| '{' is not preceded with whitespace. | 37 |
| 'if' construct must use '{}'s. | 40 |
| '(' is followed by whitespace. | 40 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 44 |
| Missing a Javadoc comment. | 44 |
| Parameter o should be final. | 44 |
| 'if' construct must use '{}'s. | 45 |
| 'if' construct must use '{}'s. | 46 |
| 'if' construct must use '{}'s. | 50 |
| Line is longer than 80 characters (found 111). | 50 |
| Avoid inline conditionals. | 50 |
| 'if' construct must use '{}'s. | 51 |
| Line is longer than 80 characters (found 91). | 51 |
| Avoid inline conditionals. | 51 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 56 |
| Missing a Javadoc comment. | 56 |
| Avoid inline conditionals. | 58 |
| '29' is a magic number. | 59 |
| Avoid inline conditionals. | 59 |
| Method 'getComment' is not designed for extension - needs to be abstract, final or empty. | 63 |
| Missing a Javadoc comment. | 63 |
| '{' is not preceded with whitespace. | 63 |
| Line contains a tab character. | 67 |
| Expected an @return tag. | 68 |
| Method 'getId' is not designed for extension - needs to be abstract, final or empty. | 68 |
| '{' is not preceded with whitespace. | 68 |
| Line contains a tab character. | 72 |
| Method 'setId' is not designed for extension - needs to be abstract, final or empty. | 73 |
| Parameter l should be final. | 73 |
| Expected @param tag for 'l'. | 73 |
| '{' is not preceded with whitespace. | 73 |
| Violation | Message | Line |
|---|---|---|
| Class VisibleReaction should be declared as final. | 41 |
| Missing a Javadoc comment. | 42 |
| Missing a Javadoc comment. | 43 |
| Missing a Javadoc comment. | 44 |
| Missing a Javadoc comment. | 45 |
| Parameter reaction should be final. | 45 |
| 'reaction' hides a field. | 45 |
| Parameter view should be final. | 45 |
| 'view' hides a field. | 45 |
| Line contains a tab character. | 46 |
| Parameter iubmb should be final. | 46 |
| 'iubmb' hides a field. | 46 |
| '{' is not preceded with whitespace. | 46 |
| Missing a Javadoc comment. | 51 |
| Line contains a tab character. | 52 |
| Line contains a tab character. | 53 |
| Line contains a tab character. | 54 |
| Missing a Javadoc comment. | 54 |
| Line contains a tab character. | 55 |
| Line contains a tab character. | 56 |
| Line contains a tab character. | 57 |
| Missing a Javadoc comment. | 57 |
| Line contains a tab character. | 58 |
| Line contains a tab character. | 59 |
| Line contains a tab character. | 60 |
| Parameter obj should be final. | 61 |
| 'if' construct must use '{}'s. | 62 |
| 'if' construct must use '{}'s. | 63 |
| Line contains a tab character. | 67 |
| '{' is not preceded with whitespace. | 67 |
| Line contains a tab character. | 68 |
| Line contains a tab character. | 69 |
| Missing a Javadoc comment. | 72 |
| '{' is not preceded with whitespace. | 72 |
| '4' is a magic number. | 73 |
| Method 'size' is not designed for extension - needs to be abstract, final or empty. | 79 |
| '{' is not preceded with whitespace. | 79 |
| Method 'getReaction' is not designed for extension - needs to be abstract, final or empty. | 83 |
| Missing a Javadoc comment. | 83 |
| Parameter i should be final. | 83 |
| '{' is not preceded with whitespace. | 83 |
| Method 'getReactions' is not designed for extension - needs to be abstract, final or empty. | 94 |
| Parameter theView should be final. | 94 |
| Expected @param tag for 'theView'. | 94 |
| '{' is not preceded with whitespace. | 94 |
| Line contains a tab character. | 95 |
| Line contains a tab character. | 97 |
| Line contains a tab character. | 98 |
| Line has trailing spaces. | 101 |
| Unused @param tag for 'view'. | 104 |
| Line contains a tab character. | 106 |
| Line contains a tab character. | 107 |
| Method 'forView' is not designed for extension - needs to be abstract, final or empty. | 110 |
| Parameter theView should be final. | 110 |
| Expected @param tag for 'theView'. | 110 |
| '{' is not preceded with whitespace. | 110 |
| Line contains a tab character. | 111 |
| Line is longer than 80 characters (found 82). | 114 |
| switch without "default" clause. | 121 |
| Line contains a tab character. | 122 |
| Line contains a tab character. | 123 |
| '{' is not preceded with whitespace. | 124 |
| '{' is not preceded with whitespace. | 127 |
| Line contains a tab character. | 131 |
| Line contains a tab character. | 132 |
| Line contains a tab character. | 133 |
| 'if' construct must use '{}'s. | 134 |
| Line contains a tab character. | 135 |
| Line contains a tab character. | 136 |
| Line contains a tab character. | 137 |
| 'if' construct must use '{}'s. | 138 |
| Line contains a tab character. | 139 |
| Line contains a tab character. | 140 |
| '?' is not preceded with whitespace. | 142 |
| Avoid inline conditionals. | 142 |
| Method 'getReactionView' is not designed for extension - needs to be abstract, final or empty. | 145 |
| Missing a Javadoc comment. | 145 |
| Parameter i should be final. | 145 |
| '{' is not preceded with whitespace. | 145 |
| Line has trailing spaces. | 148 |
| Method 'getReactionIubmbFlag' is not designed for extension - needs to be abstract, final or empty. | 155 |
| Parameter i should be final. | 155 |
| '{' is not preceded with whitespace. | 155 |
| Line contains a tab character. | 156 |
| Method 'add' is not designed for extension - needs to be abstract, final or empty. | 167 |
| Parameter reaction should be final. | 167 |
| Expected @param tag for 'reaction'. | 167 |
| Parameter view should be final. | 167 |
| Expected @param tag for 'view'. | 167 |
| Parameter iubmb should be final. | 167 |
| Expected @param tag for 'iubmb'. | 167 |
| '{' is not preceded with whitespace. | 167 |
| Line contains a tab character. | 169 |
| Method 'add' is not designed for extension - needs to be abstract, final or empty. | 177 |
| Parameter er should be final. | 177 |
| Expected @param tag for 'er'. | 177 |
| '{' is not preceded with whitespace. | 177 |
| '{' is not preceded with whitespace. | 179 |
| 'if' construct must use '{}'s. | 180 |
| '4' is a magic number. | 181 |
| Method 'removeReaction' is not designed for extension - needs to be abstract, final or empty. | 191 |
| Parameter reaction should be final. | 191 |
| Expected @param tag for 'reaction'. | 191 |
| '{' is not preceded with whitespace. | 191 |
| Line is longer than 80 characters (found 82). | 192 |
| '{' is not preceded with whitespace. | 194 |
| Method 'setReactions' is not designed for extension - needs to be abstract, final or empty. | 201 |
| Missing a Javadoc comment. | 201 |
| Parameter reactions should be final. | 201 |
| 'reactions' hides a field. | 201 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 205 |
| Parameter obj should be final. | 206 |
| 'if' construct must use '{}'s. | 207 |
| 'if' construct must use '{}'s. | 208 |
| 'if' construct must use '{}'s. | 210 |
| 'if' construct must use '{}'s. | 212 |
| 'if' construct must use '{}'s. | 214 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 220 |
| '3' is a magic number. | 222 |
| Line is longer than 80 characters (found 84). | 223 |
| '61' is a magic number. | 223 |
| Avoid inline conditionals. | 223 |
| Line contains a tab character. | 227 |
| Method 'iterator' is not designed for extension - needs to be abstract, final or empty. | 227 |
| Missing a Javadoc comment. | 227 |
| Line contains a tab character. | 228 |
| Line contains a tab character. | 229 |
| Line contains a tab character. | 231 |
| Method 'add' is not designed for extension - needs to be abstract, final or empty. | 231 |
| Missing a Javadoc comment. | 231 |
| Parameter arg0 should be final. | 231 |
| Line contains a tab character. | 232 |
| Line contains a tab character. | 233 |
| Line contains a tab character. | 235 |
| Method 'addAll' is not designed for extension - needs to be abstract, final or empty. | 235 |
| Missing a Javadoc comment. | 235 |
| Parameter arg0 should be final. | 235 |
| Line contains a tab character. | 236 |
| Line contains a tab character. | 237 |
| Line contains a tab character. | 239 |
| Method 'clear' is not designed for extension - needs to be abstract, final or empty. | 239 |
| Missing a Javadoc comment. | 239 |
| Line contains a tab character. | 240 |
| Line contains a tab character. | 241 |
| Line contains a tab character. | 243 |
| Method 'contains' is not designed for extension - needs to be abstract, final or empty. | 243 |
| Missing a Javadoc comment. | 243 |
| Parameter arg0 should be final. | 243 |
| Line contains a tab character. | 244 |
| Line contains a tab character. | 245 |
| Line contains a tab character. | 247 |
| Method 'containsAll' is not designed for extension - needs to be abstract, final or empty. | 247 |
| Missing a Javadoc comment. | 247 |
| Parameter arg0 should be final. | 247 |
| Line contains a tab character. | 248 |
| Line contains a tab character. | 249 |
| Line contains a tab character. | 251 |
| Method 'isEmpty' is not designed for extension - needs to be abstract, final or empty. | 251 |
| Missing a Javadoc comment. | 251 |
| Line contains a tab character. | 252 |
| Line contains a tab character. | 253 |
| Line contains a tab character. | 255 |
| Method 'remove' is not designed for extension - needs to be abstract, final or empty. | 255 |
| Missing a Javadoc comment. | 255 |
| Parameter arg0 should be final. | 255 |
| Line contains a tab character. | 256 |
| Line contains a tab character. | 257 |
| Line contains a tab character. | 259 |
| Method 'removeAll' is not designed for extension - needs to be abstract, final or empty. | 259 |
| Missing a Javadoc comment. | 259 |
| Parameter arg0 should be final. | 259 |
| Line contains a tab character. | 260 |
| Line contains a tab character. | 261 |
| Line contains a tab character. | 263 |
| Method 'retainAll' is not designed for extension - needs to be abstract, final or empty. | 263 |
| Missing a Javadoc comment. | 263 |
| Parameter arg0 should be final. | 263 |
| Line contains a tab character. | 264 |
| Line contains a tab character. | 265 |
| Line contains a tab character. | 267 |
| Method 'toArray' is not designed for extension - needs to be abstract, final or empty. | 267 |
| Missing a Javadoc comment. | 267 |
| Line contains a tab character. | 268 |
| Line contains a tab character. | 269 |
| Line is longer than 80 characters (found 84). | 271 |
| Line contains a tab character. | 271 |
| Method 'toArray' is not designed for extension - needs to be abstract, final or empty. | 271 |
| Missing a Javadoc comment. | 271 |
| Parameter arg0 should be final. | 271 |
| Line contains a tab character. | 272 |
| Line contains a tab character. | 273 |
| Violation | Message | Line |
|---|---|---|
| Class EnzymeClass should be declared as final. | 13 |
| Missing a Javadoc comment. | 15 |
| Missing a Javadoc comment. | 17 |
| Missing a Javadoc comment. | 19 |
| Missing a Javadoc comment. | 21 |
| Line is longer than 80 characters (found 116). | 31 |
| Parameter ec should be final. | 31 |
| 'ec' hides a field. | 31 |
| Parameter name should be final. | 31 |
| 'name' hides a field. | 31 |
| Parameter description should be final. | 31 |
| 'description' hides a field. | 31 |
| Parameter subclasses should be final. | 31 |
| 'subclasses' hides a field. | 31 |
| Unused @throws tag for 'NullPointerException'. | 45 |
| Line is longer than 80 characters (found 94). | 46 |
| Unused @throws tag for 'IllegalArgumentException'. | 46 |
| Expected an @return tag. | 48 |
| Line is longer than 80 characters (found 95). | 48 |
| Parameter ec should be final. | 48 |
| Parameter name should be final. | 48 |
| Parameter description should be final. | 48 |
| Line contains a tab character. | 49 |
| Parameter subclasses should be final. | 49 |
| 'if' construct must use '{}'s. | 50 |
| 'if' construct must use '{}'s. | 52 |
| Line is longer than 80 characters (found 89). | 52 |
| 'if' construct must use '{}'s. | 53 |
| Line is longer than 80 characters (found 112). | 53 |
| Line is longer than 80 characters (found 116). | 61 |
| Parameter enzymeClass should be final. | 63 |
| Parameter o should be final. | 73 |
| 'if' construct must use '{}'s. | 74 |
| 'if' construct must use '{}'s. | 75 |
| 'if' construct must use '{}'s. | 79 |
| Line is longer than 80 characters (found 123). | 79 |
| Avoid inline conditionals. | 79 |
| 'if' construct must use '{}'s. | 80 |
| Line is longer than 80 characters (found 87). | 80 |
| Avoid inline conditionals. | 80 |
| 'if' construct must use '{}'s. | 81 |
| Line is longer than 80 characters (found 95). | 81 |
| Avoid inline conditionals. | 81 |
| 'if' construct must use '{}'s. | 82 |
| Line is longer than 80 characters (found 119). | 82 |
| Avoid inline conditionals. | 82 |
| Missing a Javadoc comment. | 87 |
| Avoid inline conditionals. | 89 |
| '29' is a magic number. | 90 |
| Avoid inline conditionals. | 90 |
| '29' is a magic number. | 91 |
| Avoid inline conditionals. | 91 |
| '29' is a magic number. | 92 |
| Avoid inline conditionals. | 92 |
| Missing a Javadoc comment. | 110 |
| Missing a Javadoc comment. | 114 |
| Missing a Javadoc comment. | 118 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 16 |
| Missing a Javadoc comment. | 18 |
| Missing a Javadoc comment. | 20 |
| Line is longer than 80 characters (found 111). | 28 |
| Unused @throws tag for 'NullPointerException'. | 28 |
| Unused @throws tag for 'IllegalArgumentException'. | 29 |
| Line is longer than 80 characters (found 98). | 31 |
| Parameter commentText should be final. | 31 |
| 'commentText' hides a field. | 31 |
| Parameter source should be final. | 31 |
| 'source' hides a field. | 31 |
| Parameter view should be final. | 31 |
| 'view' hides a field. | 31 |
| 'if' construct must use '{}'s. | 32 |
| Line is longer than 80 characters (found 105). | 32 |
| 'if' construct must use '{}'s. | 33 |
| Line is longer than 80 characters (found 95). | 33 |
| 'if' construct must use '{}'s. | 34 |
| Line is longer than 80 characters (found 91). | 34 |
| 'if' construct must use '{}'s. | 35 |
| Line is longer than 80 characters (found 113). | 35 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 47 |
| Parameter o should be final. | 47 |
| 'if' construct must use '{}'s. | 48 |
| 'if' construct must use '{}'s. | 49 |
| 'if' construct must use '{}'s. | 53 |
| Line is longer than 80 characters (found 115). | 53 |
| Avoid inline conditionals. | 53 |
| 'if' construct must use '{}'s. | 54 |
| Line is longer than 80 characters (found 95). | 54 |
| Avoid inline conditionals. | 54 |
| 'if' construct must use '{}'s. | 55 |
| Line is longer than 80 characters (found 87). | 55 |
| Avoid inline conditionals. | 55 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 65 |
| Avoid inline conditionals. | 67 |
| '29' is a magic number. | 68 |
| Avoid inline conditionals. | 68 |
| '29' is a magic number. | 69 |
| Avoid inline conditionals. | 69 |
| Method 'getCommentText' is not designed for extension - needs to be abstract, final or empty. | 76 |
| Missing a Javadoc comment. | 76 |
| Method 'getSource' is not designed for extension - needs to be abstract, final or empty. | 80 |
| Missing a Javadoc comment. | 80 |
| Method 'getView' is not designed for extension - needs to be abstract, final or empty. | 84 |
| Missing a Javadoc comment. | 84 |
| Violation | Message | Line |
|---|---|---|
| Class EnzymeCommissionNumber should be declared as final. | 29 |
| Line is longer than 80 characters (found 118). | 32 |
| 'static' modifier out of order with the JLS suggestions. | 34 |
| Line contains a tab character. | 35 |
| Line has trailing spaces. | 41 |
| Line is longer than 80 characters (found 84). | 47 |
| Line contains a tab character. | 47 |
| Line contains a tab character. | 48 |
| Line is longer than 80 characters (found 93). | 49 |
| Line contains a tab character. | 49 |
| Line contains a tab character. | 50 |
| Line is longer than 80 characters (found 99). | 51 |
| Line contains a tab character. | 51 |
| Line contains a tab character. | 52 |
| Line contains a tab character. | 53 |
| Line contains a tab character. | 54 |
| Line contains a tab character. | 55 |
| Line contains a tab character. | 56 |
| Line contains a tab character. | 57 |
| Line contains a tab character. | 58 |
| Line has trailing spaces. | 80 |
| Line is longer than 80 characters (found 91). | 96 |
| Parameter ec1 should be final. | 96 |
| 'ec1' hides a field. | 96 |
| Parameter ec2 should be final. | 96 |
| 'ec2' hides a field. | 96 |
| Parameter ec3 should be final. | 96 |
| 'ec3' hides a field. | 96 |
| Parameter ec4 should be final. | 96 |
| 'ec4' hides a field. | 96 |
| Parameter preliminary should be final. | 96 |
| '?' is not preceded with whitespace. | 102 |
| Avoid inline conditionals. | 102 |
| ':' is not preceded with whitespace. | 102 |
| ':' should be on a new line. | 102 |
| Line contains a tab character. | 103 |
| '?' is not preceded with whitespace. | 103 |
| Avoid inline conditionals. | 103 |
| ':' is not preceded with whitespace. | 103 |
| ':' should be on a new line. | 103 |
| Line contains a tab character. | 104 |
| '?' is not preceded with whitespace. | 104 |
| Avoid inline conditionals. | 104 |
| ':' is not preceded with whitespace. | 104 |
| ':' should be on a new line. | 104 |
| Line contains a tab character. | 105 |
| '?' is not preceded with whitespace. | 105 |
| Avoid inline conditionals. | 105 |
| ':' is not preceded with whitespace. | 105 |
| ':' should be on a new line. | 105 |
| Line contains a tab character. | 106 |
| '?' is not preceded with whitespace. | 106 |
| Avoid inline conditionals. | 106 |
| Line is longer than 80 characters (found 90). | 110 |
| Line is longer than 80 characters (found 98). | 112 |
| Line is longer than 80 characters (found 121). | 113 |
| Parameter ec1 should be final. | 119 |
| 'if' construct must use '{}'s. | 120 |
| Line is longer than 80 characters (found 91). | 125 |
| Line is longer than 80 characters (found 106). | 127 |
| Line is longer than 80 characters (found 114). | 130 |
| Line is longer than 80 characters (found 98). | 132 |
| Line is longer than 80 characters (found 121). | 133 |
| Line is longer than 80 characters (found 85). | 140 |
| Parameter ec1 should be final. | 140 |
| Parameter ec2 should be final. | 140 |
| 'if' construct must use '{}'s. | 141 |
| 'if' construct must use '{}'s. | 142 |
| Line is longer than 80 characters (found 91). | 148 |
| Line is longer than 80 characters (found 115). | 150 |
| Line is longer than 80 characters (found 116). | 153 |
| Line is longer than 80 characters (found 98). | 155 |
| Line is longer than 80 characters (found 121). | 156 |
| Line is longer than 80 characters (found 94). | 164 |
| Parameter ec1 should be final. | 164 |
| Parameter ec2 should be final. | 164 |
| Parameter ec3 should be final. | 164 |
| 'if' construct must use '{}'s. | 165 |
| 'if' construct must use '{}'s. | 166 |
| 'if' construct must use '{}'s. | 167 |
| 'if' construct must use '{}'s. | 169 |
| 'if' construct must use '{}'s. | 172 |
| Line is longer than 80 characters (found 91). | 179 |
| Line is longer than 80 characters (found 105). | 181 |
| Line is longer than 80 characters (found 118). | 183 |
| Line is longer than 80 characters (found 98). | 185 |
| Line is longer than 80 characters (found 121). | 186 |
| Line is longer than 80 characters (found 82). | 195 |
| Parameter ec1 should be final. | 195 |
| Parameter ec2 should be final. | 195 |
| Parameter ec3 should be final. | 195 |
| Parameter ec4 should be final. | 195 |
| Line has trailing spaces. | 199 |
| Line is longer than 80 characters (found 82). | 210 |
| Parameter ec1 should be final. | 210 |
| Expected @param tag for 'ec1'. | 210 |
| Parameter ec2 should be final. | 210 |
| Expected @param tag for 'ec2'. | 210 |
| Parameter ec3 should be final. | 210 |
| Expected @param tag for 'ec3'. | 210 |
| Parameter ec4 should be final. | 210 |
| Expected @param tag for 'ec4'. | 210 |
| Line contains a tab character. | 211 |
| Parameter preliminary should be final. | 211 |
| '{' is not preceded with whitespace. | 211 |
| 'if' construct must use '{}'s. | 212 |
| Line contains a tab character. | 212 |
| Line contains a tab character. | 213 |
| 'if' construct must use '{}'s. | 214 |
| Line contains a tab character. | 214 |
| Line contains a tab character. | 215 |
| Line contains a tab character. | 216 |
| 'if' construct must use '{}'s. | 217 |
| Line contains a tab character. | 217 |
| Line contains a tab character. | 218 |
| Line contains a tab character. | 219 |
| 'if' construct must use '{}'s. | 220 |
| Line contains a tab character. | 220 |
| Line contains a tab character. | 221 |
| Line contains a tab character. | 222 |
| 'if' construct must use '{}'s. | 223 |
| Line contains a tab character. | 223 |
| Line contains a tab character. | 224 |
| 'if' construct must use '{}'s. | 225 |
| Line contains a tab character. | 225 |
| Line contains a tab character. | 226 |
| Line contains a tab character. | 227 |
| Line is longer than 80 characters (found 89). | 231 |
| Line is longer than 80 characters (found 81). | 236 |
| Unused @throws tag for 'NullPointerException'. | 236 |
| Line is longer than 80 characters (found 89). | 238 |
| Expected an @return tag. | 240 |
| Parameter ecString should be final. | 240 |
| Redundant throws: 'NumberFormatException' is unchecked exception. | 241 |
| 'if' construct must use '{}'s. | 242 |
| Line has trailing spaces. | 242 |
| Line is longer than 80 characters (found 81). | 243 |
| Line contains a tab character. | 243 |
| Line is longer than 80 characters (found 95). | 247 |
| switch without "default" clause. | 249 |
| '3' is a magic number. | 256 |
| '4' is a magic number. | 259 |
| Line contains a tab character. | 260 |
| '{' is not preceded with whitespace. | 260 |
| Must have at least one statement. | 260 |
| Line contains a tab character. | 261 |
| Line contains a tab character. | 262 |
| Line contains a tab character. | 263 |
| Line is longer than 80 characters (found 81). | 264 |
| Line contains a tab character. | 264 |
| Line is longer than 80 characters (found 82). | 265 |
| Line contains a tab character. | 265 |
| Line is longer than 80 characters (found 82). | 266 |
| Line contains a tab character. | 266 |
| Line contains a tab character. | 267 |
| Line contains a tab character. | 268 |
| Line contains a tab character. | 269 |
| Line contains a tab character. | 270 |
| '{' is not preceded with whitespace. | 270 |
| Line contains a tab character. | 271 |
| Line contains a tab character. | 272 |
| '{' is not preceded with whitespace. | 272 |
| Line contains a tab character. | 273 |
| Line contains a tab character. | 274 |
| Line contains a tab character. | 275 |
| Line contains a tab character. | 276 |
| Line contains a tab character. | 277 |
| Unused @throws tag for 'NullPointerException'. | 290 |
| Parameter ecToCopy should be final. | 292 |
| 'if' construct must use '{}'s. | 293 |
| Line is longer than 80 characters (found 81). | 294 |
| Line contains a tab character. | 294 |
| Line contains a tab character. | 296 |
| Line is longer than 80 characters (found 116). | 304 |
| Parameter ec should be final. | 306 |
| 'if' construct must use '{}'s. | 308 |
| 'if' construct must use '{}'s. | 311 |
| 'if' construct must use '{}'s. | 314 |
| Line has trailing spaces. | 315 |
| Line contains a tab character. | 315 |
| Line contains a tab character. | 316 |
| 'if' construct must use '{}'s. | 317 |
| Line contains a tab character. | 317 |
| Line has trailing spaces. | 318 |
| Line contains a tab character. | 318 |
| 'if' construct must use '{}'s. | 320 |
| Line contains a tab character. | 330 |
| Parameter ecString should be final. | 352 |
| Line contains a tab character. | 353 |
| Line contains a tab character. | 354 |
| Line has trailing spaces. | 356 |
| Line contains a tab character. | 362 |
| Parameter ecString should be final. | 364 |
| Expected @param tag for 'ecString'. | 364 |
| '{' is not preceded with whitespace. | 364 |
| Line contains a tab character. | 365 |
| 'if' construct must use '{}'s. | 394 |
| Line contains a tab character. | 395 |
| Line contains a tab character. | 407 |
| Line contains a tab character. | 408 |
| Line contains a tab character. | 409 |
| Line contains a tab character. | 410 |
| Line contains a tab character. | 411 |
| Line contains a tab character. | 412 |
| Line contains a tab character. | 413 |
| Avoid inline conditionals. | 413 |
| Line contains a tab character. | 414 |
| Parameter obj should be final. | 418 |
| 'if' construct must use '{}'s. | 419 |
| Line contains a tab character. | 419 |
| Line contains a tab character. | 420 |
| 'if' construct must use '{}'s. | 421 |
| Line contains a tab character. | 421 |
| Line contains a tab character. | 422 |
| 'if' construct must use '{}'s. | 423 |
| Line contains a tab character. | 423 |
| Line contains a tab character. | 424 |
| Line contains a tab character. | 425 |
| 'if' construct must use '{}'s. | 426 |
| Line contains a tab character. | 426 |
| Line contains a tab character. | 427 |
| 'if' construct must use '{}'s. | 428 |
| Line contains a tab character. | 428 |
| Line contains a tab character. | 429 |
| 'if' construct must use '{}'s. | 430 |
| Line contains a tab character. | 430 |
| Line contains a tab character. | 431 |
| 'if' construct must use '{}'s. | 432 |
| Line contains a tab character. | 432 |
| Line contains a tab character. | 433 |
| Line contains a tab character. | 434 |
| 'if' construct must use '{}'s. | 435 |
| Line contains a tab character. | 435 |
| Line contains a tab character. | 436 |
| 'if' construct must use '{}'s. | 437 |
| Line contains a tab character. | 437 |
| Line contains a tab character. | 438 |
| Line contains a tab character. | 439 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 82). | 62 |
| Line is longer than 80 characters (found 103). | 118 |
| Line is longer than 80 characters (found 92). | 133 |
| Line is longer than 80 characters (found 86). | 138 |
| Unused @throws tag for 'NullPointerException'. | 177 |
| Method 'addReaction' is not designed for extension - needs to be abstract, final or empty. | 180 |
| Parameter reaction should be final. | 180 |
| 'if' construct must use '{}'s. | 181 |
| Line is longer than 80 characters (found 99). | 181 |
| 'if' construct must use '{}'s. | 184 |
| Method 'addEnzymaticReaction' is not designed for extension - needs to be abstract, final or empty. | 196 |
| Parameter reaction should be final. | 196 |
| Expected @param tag for 'reaction'. | 196 |
| Parameter view should be final. | 196 |
| Expected @param tag for 'view'. | 196 |
| Line contains a tab character. | 197 |
| Parameter iubmb should be final. | 197 |
| '{' is not preceded with whitespace. | 197 |
| 'if' construct must use '{}'s. | 198 |
| Unused @throws tag for 'NullPointerException'. | 209 |
| Method 'addCofactor' is not designed for extension - needs to be abstract, final or empty. | 212 |
| Parameter cofactor should be final. | 212 |
| 'if' construct must use '{}'s. | 213 |
| Line is longer than 80 characters (found 81). | 214 |
| 'if' construct must use '{}'s. | 215 |
| Method 'addCofactor' is not designed for extension - needs to be abstract, final or empty. | 223 |
| Parameter cofactor should be final. | 223 |
| '{' is not preceded with whitespace. | 223 |
| 'if' construct must use '{}'s. | 224 |
| Line contains a tab character. | 224 |
| Line is longer than 80 characters (found 91). | 225 |
| Line contains a tab character. | 225 |
| 'if' construct must use '{}'s. | 226 |
| Line is longer than 80 characters (found 84). | 226 |
| Line contains a tab character. | 226 |
| Line is longer than 80 characters (found 101). | 227 |
| Line contains a tab character. | 227 |
| Line contains a tab character. | 228 |
| Unused @throws tag for 'NullPointerException'. | 235 |
| Method 'removeReaction' is not designed for extension - needs to be abstract, final or empty. | 238 |
| Parameter equation should be final. | 238 |
| 'if' construct must use '{}'s. | 239 |
| Line is longer than 80 characters (found 99). | 239 |
| Method 'removeEnzymaticReaction' is not designed for extension - needs to be abstract, final or empty. | 249 |
| Missing a Javadoc comment. | 249 |
| Parameter reaction should be final. | 249 |
| '{' is not preceded with whitespace. | 249 |
| Line is longer than 80 characters (found 86). | 257 |
| Unused @throws tag for 'NullPointerException'. | 257 |
| Method 'removeCofactor' is not designed for extension - needs to be abstract, final or empty. | 260 |
| Parameter cofactorString should be final. | 260 |
| 'if' construct must use '{}'s. | 261 |
| Line is longer than 80 characters (found 113). | 261 |
| Line is longer than 80 characters (found 90). | 263 |
| Method 'removeCofactor' is not designed for extension - needs to be abstract, final or empty. | 276 |
| Parameter cofactor should be final. | 276 |
| Expected @param tag for 'cofactor'. | 276 |
| '{' is not preceded with whitespace. | 276 |
| 'if' construct must use '{}'s. | 277 |
| Method 'removeCofactor' is not designed for extension - needs to be abstract, final or empty. | 287 |
| Parameter cofactor should be final. | 287 |
| Expected @param tag for 'cofactor'. | 287 |
| '{' is not preceded with whitespace. | 287 |
| 'if' construct must use '{}'s. | 288 |
| Unused @throws tag for 'NullPointerException'. | 297 |
| Method 'addSynonym' is not designed for extension - needs to be abstract, final or empty. | 299 |
| Parameter synonym should be final. | 299 |
| 'if' construct must use '{}'s. | 300 |
| Line is longer than 80 characters (found 97). | 300 |
| Unused @throws tag for 'NullPointerException'. | 308 |
| Method 'removeSynonym' is not designed for extension - needs to be abstract, final or empty. | 310 |
| Parameter synonym should be final. | 310 |
| 'if' construct must use '{}'s. | 311 |
| Line is longer than 80 characters (found 97). | 311 |
| Unused @throws tag for 'NullPointerException'. | 321 |
| Method 'addLink' is not designed for extension - needs to be abstract, final or empty. | 323 |
| Parameter link should be final. | 323 |
| 'if' construct must use '{}'s. | 324 |
| Line is longer than 80 characters (found 91). | 324 |
| 'if' construct must use '{}'s. | 326 |
| Unused @throws tag for 'NullPointerException'. | 333 |
| Method 'removeLink' is not designed for extension - needs to be abstract, final or empty. | 335 |
| Parameter link should be final. | 335 |
| 'if' construct must use '{}'s. | 336 |
| Line is longer than 80 characters (found 91). | 336 |
| Line is longer than 80 characters (found 81). | 344 |
| Unused @throws tag for 'NullPointerException'. | 344 |
| Method 'addReference' is not designed for extension - needs to be abstract, final or empty. | 346 |
| Parameter reference should be final. | 346 |
| 'if' construct must use '{}'s. | 347 |
| Line is longer than 80 characters (found 101). | 347 |
| 'if' construct must use '{}'s. | 350 |
| Line is longer than 80 characters (found 81). | 360 |
| Unused @throws tag for 'NullPointerException'. | 360 |
| Method 'removeReference' is not designed for extension - needs to be abstract, final or empty. | 362 |
| Parameter reference should be final. | 362 |
| 'if' construct must use '{}'s. | 363 |
| Line is longer than 80 characters (found 101). | 363 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 379 |
| Parameter o should be final. | 380 |
| 'if' construct must use '{}'s. | 381 |
| 'if' construct must use '{}'s. | 382 |
| 'if' construct must use '{}'s. | 386 |
| 'if' construct must use '{}'s. | 387 |
| 'if' construct must use '{}'s. | 388 |
| Line is longer than 80 characters (found 115). | 388 |
| Avoid inline conditionals. | 388 |
| 'if' construct must use '{}'s. | 389 |
| Line is longer than 80 characters (found 115). | 389 |
| Avoid inline conditionals. | 389 |
| 'if' construct must use '{}'s. | 390 |
| Line is longer than 80 characters (found 111). | 390 |
| Avoid inline conditionals. | 390 |
| 'if' construct must use '{}'s. | 391 |
| Line is longer than 80 characters (found 123). | 391 |
| Avoid inline conditionals. | 391 |
| 'if' construct must use '{}'s. | 392 |
| Line is longer than 80 characters (found 87). | 392 |
| Avoid inline conditionals. | 392 |
| 'if' construct must use '{}'s. | 393 |
| Line is longer than 80 characters (found 127). | 393 |
| Avoid inline conditionals. | 393 |
| 'if' construct must use '{}'s. | 394 |
| Line is longer than 80 characters (found 87). | 394 |
| Avoid inline conditionals. | 394 |
| 'if' construct must use '{}'s. | 395 |
| Line is longer than 80 characters (found 99). | 395 |
| Avoid inline conditionals. | 395 |
| 'if' construct must use '{}'s. | 396 |
| Line is longer than 80 characters (found 95). | 396 |
| Avoid inline conditionals. | 396 |
| Line is longer than 80 characters (found 117). | 397 |
| 'if' construct must use '{}'s. | 398 |
| '?' should be on a new line. | 398 |
| Avoid inline conditionals. | 398 |
| ':' should be on a new line. | 399 |
| Line contains a tab character. | 400 |
| 'if' construct must use '{}'s. | 401 |
| Line is longer than 80 characters (found 119). | 401 |
| Avoid inline conditionals. | 401 |
| 'if' construct must use '{}'s. | 402 |
| Line is longer than 80 characters (found 103). | 402 |
| Avoid inline conditionals. | 402 |
| 'if' construct must use '{}'s. | 403 |
| Line is longer than 80 characters (found 103). | 403 |
| Avoid inline conditionals. | 403 |
| 'if' construct must use '{}'s. | 404 |
| Line is longer than 80 characters (found 119). | 404 |
| Avoid inline conditionals. | 404 |
| '!=' should be on a new line. | 404 |
| Line is longer than 80 characters (found 94). | 405 |
| 'if' construct must use '{}'s. | 407 |
| Line is longer than 80 characters (found 127). | 407 |
| Avoid inline conditionals. | 407 |
| 'if' construct must use '{}'s. | 408 |
| Line is longer than 80 characters (found 111). | 408 |
| Avoid inline conditionals. | 408 |
| 'if' construct must use '{}'s. | 409 |
| Line is longer than 80 characters (found 115). | 409 |
| Avoid inline conditionals. | 409 |
| '!=' should be on a new line. | 409 |
| Line is longer than 80 characters (found 91). | 410 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 421 |
| Avoid inline conditionals. | 424 |
| '29' is a magic number. | 425 |
| Avoid inline conditionals. | 425 |
| '29' is a magic number. | 426 |
| Avoid inline conditionals. | 426 |
| '29' is a magic number. | 427 |
| Avoid inline conditionals. | 427 |
| Line is longer than 80 characters (found 86). | 428 |
| '29' is a magic number. | 428 |
| Avoid inline conditionals. | 428 |
| '29' is a magic number. | 429 |
| Avoid inline conditionals. | 429 |
| Line is longer than 80 characters (found 84). | 430 |
| '29' is a magic number. | 430 |
| Avoid inline conditionals. | 430 |
| '29' is a magic number. | 431 |
| Avoid inline conditionals. | 431 |
| '29' is a magic number. | 432 |
| Avoid inline conditionals. | 432 |
| '29' is a magic number. | 433 |
| Avoid inline conditionals. | 433 |
| '29' is a magic number. | 434 |
| Avoid inline conditionals. | 434 |
| '29' is a magic number. | 435 |
| Avoid inline conditionals. | 435 |
| '29' is a magic number. | 436 |
| Avoid inline conditionals. | 436 |
| '29' is a magic number. | 437 |
| Avoid inline conditionals. | 437 |
| '29' is a magic number. | 438 |
| Avoid inline conditionals. | 438 |
| '29' is a magic number. | 439 |
| Avoid inline conditionals. | 439 |
| '29' is a magic number. | 440 |
| Avoid inline conditionals. | 440 |
| '29' is a magic number. | 441 |
| Avoid inline conditionals. | 441 |
| '29' is a magic number. | 442 |
| Avoid inline conditionals. | 442 |
| Method 'getId' is not designed for extension - needs to be abstract, final or empty. | 448 |
| Missing a Javadoc comment. | 448 |
| Method 'setId' is not designed for extension - needs to be abstract, final or empty. | 452 |
| Missing a Javadoc comment. | 452 |
| Parameter id should be final. | 452 |
| 'id' hides a field. | 452 |
| Method 'getEc' is not designed for extension - needs to be abstract, final or empty. | 456 |
| Missing a Javadoc comment. | 456 |
| Unused @throws tag for 'NullPointerException'. | 464 |
| Method 'setEc' is not designed for extension - needs to be abstract, final or empty. | 466 |
| Parameter ec should be final. | 466 |
| 'ec' hides a field. | 466 |
| 'if' construct must use '{}'s. | 467 |
| Line is longer than 80 characters (found 87). | 467 |
| Method 'getClassName' is not designed for extension - needs to be abstract, final or empty. | 471 |
| Missing a Javadoc comment. | 471 |
| Line is longer than 80 characters (found 84). | 479 |
| Unused @throws tag for 'NullPointerException'. | 479 |
| Unused @throws tag for 'IllegalArgumentException'. | 480 |
| Method 'setClassName' is not designed for extension - needs to be abstract, final or empty. | 482 |
| Parameter className should be final. | 482 |
| 'className' hides a field. | 482 |
| 'if' construct must use '{}'s. | 483 |
| Line is longer than 80 characters (found 101). | 483 |
| 'if' construct must use '{}'s. | 484 |
| Line is longer than 80 characters (found 109). | 484 |
| Method 'getSubclassName' is not designed for extension - needs to be abstract, final or empty. | 488 |
| Missing a Javadoc comment. | 488 |
| Line is longer than 80 characters (found 87). | 496 |
| Unused @throws tag for 'NullPointerException'. | 496 |
| Unused @throws tag for 'IllegalArgumentException'. | 497 |
| Method 'setSubclassName' is not designed for extension - needs to be abstract, final or empty. | 499 |
| Parameter subclassName should be final. | 499 |
| 'subclassName' hides a field. | 499 |
| 'if' construct must use '{}'s. | 500 |
| Line is longer than 80 characters (found 107). | 500 |
| 'if' construct must use '{}'s. | 501 |
| Line is longer than 80 characters (found 115). | 501 |
| Method 'getSubSubclassName' is not designed for extension - needs to be abstract, final or empty. | 505 |
| Missing a Javadoc comment. | 505 |
| Line is longer than 80 characters (found 87). | 513 |
| Unused @throws tag for 'NullPointerException'. | 513 |
| Method 'setSubSubclassName' is not designed for extension - needs to be abstract, final or empty. | 515 |
| Parameter subSubclassName should be final. | 515 |
| 'subSubclassName' hides a field. | 515 |
| 'if' construct must use '{}'s. | 516 |
| Line is longer than 80 characters (found 113). | 516 |
| Method 'getCommonNames' is not designed for extension - needs to be abstract, final or empty. | 520 |
| Missing a Javadoc comment. | 520 |
| Line has trailing spaces. | 523 |
| Method 'getCommonName' is not designed for extension - needs to be abstract, final or empty. | 527 |
| '{' is not preceded with whitespace. | 527 |
| Line contains a tab character. | 528 |
| Unused @throws tag for 'IllegalArgumentException'. | 536 |
| Line is longer than 80 characters (found 106). | 537 |
| Line is longer than 80 characters (found 107). | 538 |
| Line is longer than 80 characters (found 104). | 539 |
| Method 'getCommonName' is not designed for extension - needs to be abstract, final or empty. | 541 |
| Parameter view should be final. | 541 |
| 'if' construct must use '{}'s. | 542 |
| 'if' construct must use '{}'s. | 543 |
| Line is longer than 80 characters (found 112). | 543 |
| Line is longer than 80 characters (found 160). | 544 |
| 'if' construct must use '{}'s. | 545 |
| 'if' construct must use '{}'s. | 548 |
| '&&' should be on a new line. | 548 |
| 'if' construct must use '{}'s. | 551 |
| '&&' should be on a new line. | 551 |
| 'if' construct must use '{}'s. | 554 |
| '&&' should be on a new line. | 554 |
| Line is longer than 80 characters (found 83). | 568 |
| Unused @throws tag for 'NullPointerException'. | 568 |
| Line is longer than 80 characters (found 117). | 569 |
| Line is longer than 80 characters (found 129). | 570 |
| Line is longer than 80 characters (found 87). | 572 |
| Method 'setCommonNames' is not designed for extension - needs to be abstract, final or empty. | 572 |
| Parameter commonNames should be final. | 572 |
| 'commonNames' hides a field. | 572 |
| 'if' construct must use '{}'s. | 573 |
| Line is longer than 80 characters (found 105). | 573 |
| 'if' construct must use '{}'s. | 574 |
| Line is longer than 80 characters (found 90). | 575 |
| 'if' construct must use '{}'s. | 578 |
| '+' should be on a new line. | 579 |
| Line is longer than 80 characters (found 129). | 580 |
| 'if' construct must use '{}'s. | 581 |
| 'if' construct must use '{}'s. | 583 |
| Line is longer than 80 characters (found 91). | 584 |
| Line is longer than 80 characters (found 123). | 592 |
| Line is longer than 80 characters (found 91). | 596 |
| Method 'addCommonName' is not designed for extension - needs to be abstract, final or empty. | 598 |
| Parameter commonName should be final. | 598 |
| 'if' construct must use '{}'s. | 599 |
| Line is longer than 80 characters (found 103). | 599 |
| 'if' construct must use '{}'s. | 600 |
| Line is longer than 80 characters (found 126). | 600 |
| 'if' construct must use '{}'s. | 601 |
| Method 'getSystematicName' is not designed for extension - needs to be abstract, final or empty. | 605 |
| Missing a Javadoc comment. | 605 |
| Line is longer than 80 characters (found 86). | 613 |
| Unused @throws tag for 'NullPointerException'. | 613 |
| Method 'setSystematicName' is not designed for extension - needs to be abstract, final or empty. | 615 |
| Parameter systematicName should be final. | 615 |
| 'systematicName' hides a field. | 615 |
| 'if' construct must use '{}'s. | 616 |
| Line is longer than 80 characters (found 111). | 616 |
| Expected an @return tag. | 621 |
| Method 'getReactions' is not designed for extension - needs to be abstract, final or empty. | 621 |
| Line is longer than 80 characters (found 97). | 626 |
| Unused @throws tag for 'NullPointerException'. | 629 |
| Unused @throws tag for 'IllegalArgumentException'. | 630 |
| Line is longer than 80 characters (found 106). | 631 |
| Line is longer than 80 characters (found 107). | 632 |
| Line is longer than 80 characters (found 104). | 633 |
| Line is longer than 80 characters (found 90). | 634 |
| Method 'getReactions' is not designed for extension - needs to be abstract, final or empty. | 636 |
| Parameter view should be final. | 636 |
| Expected @param tag for 'view'. | 636 |
| Line contains a tab character. | 637 |
| Line has trailing spaces. | 639 |
| Method 'getReactions' is not designed for extension - needs to be abstract, final or empty. | 640 |
| Missing a Javadoc comment. | 640 |
| Parameter view should be final. | 640 |
| '{' is not preceded with whitespace. | 640 |
| Method 'getReactions' is not designed for extension - needs to be abstract, final or empty. | 645 |
| Missing a Javadoc comment. | 645 |
| Parameter view should be final. | 645 |
| '{' is not preceded with whitespace. | 645 |
| Line contains a tab character. | 646 |
| Line has trailing spaces. | 648 |
| Line contains a tab character. | 653 |
| Method 'getEnzymaticReactions' is not designed for extension - needs to be abstract, final or empty. | 656 |
| Parameter view should be final. | 656 |
| '{' is not preceded with whitespace. | 656 |
| Line contains a tab character. | 657 |
| Line is longer than 80 characters (found 85). | 668 |
| Method 'setReactions' is not designed for extension - needs to be abstract, final or empty. | 668 |
| Parameter reactions should be final. | 668 |
| 'reactions' hides a field. | 668 |
| 'if' construct must use '{}'s. | 669 |
| Line is longer than 80 characters (found 101). | 669 |
| 'if' construct must use '{}'s. | 670 |
| Line is longer than 80 characters (found 94). | 671 |
| 'if' construct must use '{}'s. | 674 |
| Line is longer than 80 characters (found 82). | 674 |
| Method 'getEnzymaticReactions' is not designed for extension - needs to be abstract, final or empty. | 679 |
| Missing a Javadoc comment. | 679 |
| '{' is not preceded with whitespace. | 679 |
| Line contains a tab character. | 680 |
| Method 'setEnzymaticReactions' is not designed for extension - needs to be abstract, final or empty. | 683 |
| Missing a Javadoc comment. | 683 |
| Parameter enzymaticReactions should be final. | 683 |
| 'enzymaticReactions' hides a field. | 683 |
| Line contains a tab character. | 684 |
| Method 'getCofactors' is not designed for extension - needs to be abstract, final or empty. | 687 |
| Missing a Javadoc comment. | 687 |
| Method 'setCofactors' is not designed for extension - needs to be abstract, final or empty. | 691 |
| Missing a Javadoc comment. | 691 |
| Parameter cofactors should be final. | 691 |
| 'cofactors' hides a field. | 691 |
| Method 'getSynonyms' is not designed for extension - needs to be abstract, final or empty. | 695 |
| Missing a Javadoc comment. | 695 |
| Line has trailing spaces. | 698 |
| Method 'getSynonyms' is not designed for extension - needs to be abstract, final or empty. | 699 |
| Missing a Javadoc comment. | 699 |
| Parameter view should be final. | 699 |
| '{' is not preceded with whitespace. | 699 |
| Line contains a tab character. | 700 |
| Line contains a tab character. | 701 |
| Line has trailing spaces. | 703 |
| Method 'getSynonyms' is not designed for extension - needs to be abstract, final or empty. | 704 |
| Missing a Javadoc comment. | 704 |
| Parameter theView should be final. | 704 |
| '{' is not preceded with whitespace. | 704 |
| 'if' construct must use '{}'s. | 705 |
| Line contains a tab character. | 705 |
| 'if' construct must use '{}'s. | 706 |
| Line contains a tab character. | 706 |
| Line contains a tab character. | 707 |
| Line contains a tab character. | 708 |
| Line contains a tab character. | 709 |
| '{' is not preceded with whitespace. | 709 |
| Line contains a tab character. | 710 |
| switch without "default" clause. | 710 |
| Line contains a tab character. | 711 |
| Line contains a tab character. | 712 |
| Line contains a tab character. | 713 |
| Line contains a tab character. | 714 |
| Line contains a tab character. | 715 |
| Line contains a tab character. | 716 |
| Line contains a tab character. | 717 |
| Line contains a tab character. | 718 |
| Line contains a tab character. | 719 |
| Line contains a tab character. | 720 |
| 'if' construct must use '{}'s. | 721 |
| Line contains a tab character. | 721 |
| Line contains a tab character. | 722 |
| Line contains a tab character. | 723 |
| Line is longer than 80 characters (found 96). | 727 |
| Unused @throws tag for 'NullPointerException'. | 730 |
| Unused @throws tag for 'IllegalArgumentException'. | 731 |
| Line is longer than 80 characters (found 106). | 732 |
| Line is longer than 80 characters (found 107). | 733 |
| Line is longer than 80 characters (found 104). | 734 |
| Line is longer than 80 characters (found 88). | 735 |
| Method 'getSynonyms' is not designed for extension - needs to be abstract, final or empty. | 737 |
| Parameter view should be final. | 737 |
| Expected @param tag for 'view'. | 737 |
| Unused @throws tag for 'NullPointerException'. | 745 |
| Method 'setSynonyms' is not designed for extension - needs to be abstract, final or empty. | 747 |
| Parameter synonyms should be final. | 747 |
| 'synonyms' hides a field. | 747 |
| 'if' construct must use '{}'s. | 748 |
| Line is longer than 80 characters (found 99). | 748 |
| Method 'getComments' is not designed for extension - needs to be abstract, final or empty. | 752 |
| Missing a Javadoc comment. | 752 |
| Line has trailing spaces. | 755 |
| Method 'getComments' is not designed for extension - needs to be abstract, final or empty. | 756 |
| Missing a Javadoc comment. | 756 |
| Parameter view should be final. | 756 |
| '{' is not preceded with whitespace. | 756 |
| Line contains a tab character. | 757 |
| Line contains a tab character. | 758 |
| Method 'getComments' is not designed for extension - needs to be abstract, final or empty. | 761 |
| Missing a Javadoc comment. | 761 |
| Parameter theView should be final. | 761 |
| '{' is not preceded with whitespace. | 761 |
| 'if' construct must use '{}'s. | 762 |
| Line contains a tab character. | 762 |
| 'if' construct must use '{}'s. | 763 |
| Line contains a tab character. | 763 |
| Line contains a tab character. | 764 |
| Line contains a tab character. | 765 |
| Line contains a tab character. | 766 |
| '{' is not preceded with whitespace. | 766 |
| Line contains a tab character. | 767 |
| switch without "default" clause. | 767 |
| Line contains a tab character. | 768 |
| Line contains a tab character. | 769 |
| Line contains a tab character. | 770 |
| Line contains a tab character. | 771 |
| Line contains a tab character. | 772 |
| Line contains a tab character. | 773 |
| Line contains a tab character. | 774 |
| Line contains a tab character. | 775 |
| Line contains a tab character. | 776 |
| Line contains a tab character. | 777 |
| 'if' construct must use '{}'s. | 778 |
| Line contains a tab character. | 778 |
| Line contains a tab character. | 779 |
| Line contains a tab character. | 780 |
| Line is longer than 80 characters (found 96). | 784 |
| Unused @throws tag for 'NullPointerException'. | 787 |
| Unused @throws tag for 'IllegalArgumentException'. | 788 |
| Line is longer than 80 characters (found 106). | 789 |
| Line is longer than 80 characters (found 107). | 790 |
| Line is longer than 80 characters (found 104). | 791 |
| Method 'getComments' is not designed for extension - needs to be abstract, final or empty. | 794 |
| Parameter view should be final. | 794 |
| Expected @param tag for 'view'. | 794 |
| 'if' construct must use '{}'s. | 795 |
| Line is longer than 80 characters (found 91). | 795 |
| 'if' construct must use '{}'s. | 796 |
| Line is longer than 80 characters (found 112). | 796 |
| Line is longer than 80 characters (found 160). | 797 |
| 'if' construct must use '{}'s. | 798 |
| 'if' construct must use '{}'s. | 799 |
| '&&' should be on a new line. | 803 |
| '&&' should be on a new line. | 808 |
| '&&' should be on a new line. | 813 |
| Unused @throws tag for 'NullPointerException'. | 826 |
| Method 'setComments' is not designed for extension - needs to be abstract, final or empty. | 828 |
| Parameter comments should be final. | 828 |
| 'comments' hides a field. | 828 |
| 'if' construct must use '{}'s. | 829 |
| Line is longer than 80 characters (found 99). | 829 |
| Method 'getLinks' is not designed for extension - needs to be abstract, final or empty. | 833 |
| Missing a Javadoc comment. | 833 |
| Line has trailing spaces. | 836 |
| Method 'getLinks' is not designed for extension - needs to be abstract, final or empty. | 837 |
| Missing a Javadoc comment. | 837 |
| Parameter view should be final. | 837 |
| '{' is not preceded with whitespace. | 837 |
| Line contains a tab character. | 838 |
| Line contains a tab character. | 839 |
| Line has trailing spaces. | 841 |
| Expected an @return tag. | 846 |
| Method 'getCasNumbers' is not designed for extension - needs to be abstract, final or empty. | 846 |
| '{' is not preceded with whitespace. | 846 |
| Line contains a tab character. | 847 |
| Line contains a tab character. | 848 |
| '{' is not preceded with whitespace. | 848 |
| Line is longer than 80 characters (found 87). | 849 |
| Line contains a tab character. | 849 |
| '{' is not preceded with whitespace. | 849 |
| Line contains a tab character. | 850 |
| Line contains a tab character. | 851 |
| Line contains a tab character. | 852 |
| Line contains a tab character. | 853 |
| Method 'getUniProtLinks' is not designed for extension - needs to be abstract, final or empty. | 856 |
| Missing a Javadoc comment. | 856 |
| '{' is not preceded with whitespace. | 856 |
| Line contains a tab character. | 858 |
| '{' is not preceded with whitespace. | 858 |
| 'if' construct must use '{}'s. | 859 |
| Line is longer than 80 characters (found 92). | 859 |
| Line contains a tab character. | 859 |
| Line has trailing spaces. | 864 |
| Expected an @return tag. | 876 |
| Method 'getLinks' is not designed for extension - needs to be abstract, final or empty. | 876 |
| Parameter theView should be final. | 876 |
| Expected @param tag for 'theView'. | 876 |
| '{' is not preceded with whitespace. | 876 |
| Line contains a tab character. | 877 |
| Line contains a tab character. | 878 |
| Line contains a tab character. | 879 |
| '{' is not preceded with whitespace. | 879 |
| 'if' construct must use '{}'s. | 880 |
| Line is longer than 80 characters (found 88). | 880 |
| Line contains a tab character. | 880 |
| '||' should be on a new line. | 880 |
| Line is longer than 80 characters (found 84). | 881 |
| Line contains a tab character. | 882 |
| Line contains a tab character. | 883 |
| switch without "default" clause. | 883 |
| Line contains a tab character. | 884 |
| Line contains a tab character. | 885 |
| Line contains a tab character. | 886 |
| Line contains a tab character. | 887 |
| Line contains a tab character. | 888 |
| Line contains a tab character. | 889 |
| Line contains a tab character. | 890 |
| Line contains a tab character. | 891 |
| Line contains a tab character. | 892 |
| Line contains a tab character. | 893 |
| 'if' construct must use '{}'s. | 894 |
| Line contains a tab character. | 894 |
| Line contains a tab character. | 895 |
| Line contains a tab character. | 896 |
| '{' is not preceded with whitespace. | 897 |
| 'if' construct must use '{}'s. | 898 |
| switch without "default" clause. | 901 |
| Line contains a tab character. | 916 |
| Line has trailing spaces. | 920 |
| Expected an @return tag. | 925 |
| Method 'getLinks' is not designed for extension - needs to be abstract, final or empty. | 925 |
| Parameter view should be final. | 925 |
| Expected @param tag for 'view'. | 925 |
| 'if' construct must use '{}'s. | 926 |
| Line is longer than 80 characters (found 91). | 926 |
| 'if' construct must use '{}'s. | 927 |
| Line is longer than 80 characters (found 112). | 927 |
| Line is longer than 80 characters (found 160). | 928 |
| 'if' construct must use '{}'s. | 929 |
| 'if' construct must use '{}'s. | 930 |
| '&&' should be on a new line. | 934 |
| '&&' should be on a new line. | 939 |
| '&&' should be on a new line. | 944 |
| Unused @throws tag for 'NullPointerException'. | 957 |
| Method 'setLinks' is not designed for extension - needs to be abstract, final or empty. | 959 |
| Parameter links should be final. | 959 |
| 'links' hides a field. | 959 |
| 'if' construct must use '{}'s. | 960 |
| Line is longer than 80 characters (found 93). | 960 |
| Method 'getReferences' is not designed for extension - needs to be abstract, final or empty. | 964 |
| Missing a Javadoc comment. | 964 |
| Line is longer than 80 characters (found 86). | 972 |
| Line is longer than 80 characters (found 89). | 974 |
| Method 'setReferences' is not designed for extension - needs to be abstract, final or empty. | 974 |
| Parameter references should be final. | 974 |
| 'references' hides a field. | 974 |
| 'if' construct must use '{}'s. | 975 |
| Line is longer than 80 characters (found 103). | 975 |
| 'if' construct must use '{}'s. | 976 |
| Line is longer than 80 characters (found 94). | 977 |
| Method 'getNote' is not designed for extension - needs to be abstract, final or empty. | 981 |
| Missing a Javadoc comment. | 981 |
| Unused @throws tag for 'NullPointerException'. | 989 |
| Method 'setNote' is not designed for extension - needs to be abstract, final or empty. | 991 |
| Parameter note should be final. | 991 |
| 'note' hides a field. | 991 |
| 'if' construct must use '{}'s. | 992 |
| Line is longer than 80 characters (found 91). | 992 |
| Method 'getHistory' is not designed for extension - needs to be abstract, final or empty. | 996 |
| Missing a Javadoc comment. | 996 |
| Line is longer than 80 characters (found 84). | 1004 |
| Unused @throws tag for 'NullPointerException'. | 1004 |
| Method 'setHistory' is not designed for extension - needs to be abstract, final or empty. | 1006 |
| Parameter historyGraph should be final. | 1006 |
| 'historyGraph' hides a field. | 1006 |
| 'if' construct must use '{}'s. | 1007 |
| Line is longer than 80 characters (found 107). | 1007 |
| Method 'getStatus' is not designed for extension - needs to be abstract, final or empty. | 1011 |
| Missing a Javadoc comment. | 1011 |
| Unused @throws tag for 'NullPointerException'. | 1019 |
| Method 'setStatus' is not designed for extension - needs to be abstract, final or empty. | 1021 |
| Parameter status should be final. | 1021 |
| 'status' hides a field. | 1021 |
| 'if' construct must use '{}'s. | 1022 |
| Line is longer than 80 characters (found 95). | 1022 |
| Method 'getSource' is not designed for extension - needs to be abstract, final or empty. | 1026 |
| Missing a Javadoc comment. | 1026 |
| Unused @throws tag for 'NullPointerException'. | 1034 |
| Method 'setSource' is not designed for extension - needs to be abstract, final or empty. | 1036 |
| Parameter source should be final. | 1036 |
| 'source' hides a field. | 1036 |
| 'if' construct must use '{}'s. | 1037 |
| Line is longer than 80 characters (found 95). | 1037 |
| Method 'isActive' is not designed for extension - needs to be abstract, final or empty. | 1041 |
| Missing a Javadoc comment. | 1041 |
| Method 'setActive' is not designed for extension - needs to be abstract, final or empty. | 1045 |
| Missing a Javadoc comment. | 1045 |
| Parameter active should be final. | 1045 |
| Method 'isGhost' is not designed for extension - needs to be abstract, final or empty. | 1049 |
| Missing a Javadoc comment. | 1049 |
| Method 'setGhost' is not designed for extension - needs to be abstract, final or empty. | 1053 |
| Missing a Javadoc comment. | 1053 |
| Parameter ghost should be final. | 1053 |
| Method 'hasNames' is not designed for extension - needs to be abstract, final or empty. | 1057 |
| Missing a Javadoc comment. | 1057 |
| 'if' construct must use '{}'s. | 1058 |
| 'if' construct must use '{}'s. | 1059 |
| 'if' construct must use '{}'s. | 1060 |
| Line is longer than 80 characters (found 84). | 1060 |
| Violation | Message | Line |
|---|---|---|
| Line contains a tab character. | 11 |
| Method 'compare' is not designed for extension - needs to be abstract, final or empty. | 11 |
| Missing a Javadoc comment. | 11 |
| Parameter o1 should be final. | 11 |
| Parameter o2 should be final. | 11 |
| Line contains a tab character. | 12 |
| Line contains a tab character. | 13 |
| Violation | Message | Line |
|---|---|---|
| Line contains a tab character. | 15 |
| Method 'compare' is not designed for extension - needs to be abstract, final or empty. | 15 |
| Missing a Javadoc comment. | 15 |
| Parameter o1 should be final. | 15 |
| Parameter o2 should be final. | 15 |
| Line contains a tab character. | 16 |
| Line is longer than 80 characters (found 91). | 17 |
| Line contains a tab character. | 17 |
| Line contains a tab character. | 18 |
| Line is longer than 80 characters (found 91). | 19 |
| Line contains a tab character. | 19 |
| Line contains a tab character. | 20 |
| Line contains a tab character. | 21 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 102). | 14 |
| Line is longer than 80 characters (found 92). | 16 |
| Line is longer than 80 characters (found 89). | 17 |
| Line is longer than 80 characters (found 92). | 18 |
| Class EnzymeLink should be declared as final. | 28 |
| Line is longer than 80 characters (found 91). | 33 |
| Line contains a tab character. | 33 |
| Line is longer than 80 characters (found 96). | 34 |
| Line contains a tab character. | 34 |
| Line has trailing spaces. | 35 |
| Line is longer than 80 characters (found 93). | 40 |
| Line contains a tab character. | 40 |
| Line is longer than 80 characters (found 97). | 41 |
| Line contains a tab character. | 41 |
| Line is longer than 80 characters (found 87). | 47 |
| Line contains a tab character. | 47 |
| Line is longer than 80 characters (found 90). | 48 |
| Line contains a tab character. | 48 |
| Line is longer than 80 characters (found 91). | 54 |
| Line contains a tab character. | 54 |
| Line is longer than 80 characters (found 90). | 55 |
| Line contains a tab character. | 55 |
| Line is longer than 80 characters (found 95). | 61 |
| Line contains a tab character. | 61 |
| Line is longer than 80 characters (found 89). | 62 |
| Line contains a tab character. | 62 |
| Line is longer than 80 characters (found 87). | 70 |
| Line contains a tab character. | 70 |
| Line is longer than 80 characters (found 94). | 71 |
| Line contains a tab character. | 71 |
| Line is longer than 80 characters (found 85). | 77 |
| Line contains a tab character. | 77 |
| Line is longer than 80 characters (found 90). | 78 |
| Line contains a tab character. | 78 |
| Line is longer than 80 characters (found 83). | 84 |
| Line contains a tab character. | 84 |
| Line is longer than 80 characters (found 90). | 85 |
| Line contains a tab character. | 85 |
| Line is longer than 80 characters (found 91). | 91 |
| Line contains a tab character. | 91 |
| Line is longer than 80 characters (found 90). | 92 |
| Line contains a tab character. | 92 |
| Line is longer than 80 characters (found 89). | 98 |
| Line contains a tab character. | 98 |
| Line is longer than 80 characters (found 90). | 99 |
| Line contains a tab character. | 99 |
| Line is longer than 80 characters (found 85). | 105 |
| Line contains a tab character. | 105 |
| Line is longer than 80 characters (found 90). | 106 |
| Line contains a tab character. | 106 |
| Line is longer than 80 characters (found 85). | 112 |
| Line contains a tab character. | 112 |
| Line is longer than 80 characters (found 90). | 113 |
| Line contains a tab character. | 113 |
| Missing a Javadoc comment. | 115 |
| Missing a Javadoc comment. | 120 |
| Missing a Javadoc comment. | 125 |
| Name 'STATIC_LINKS' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 125 |
| Missing a Javadoc comment. | 161 |
| Missing a Javadoc comment. | 168 |
| Line is longer than 80 characters (found 114). | 178 |
| Parameter xrefDatabaseConstant should be final. | 178 |
| 'xrefDatabaseConstant' hides a field. | 178 |
| Parameter specificUrl should be final. | 178 |
| 'specificUrl' hides a field. | 178 |
| Parameter accession should be final. | 178 |
| 'accession' hides a field. | 178 |
| Parameter name should be final. | 178 |
| 'name' hides a field. | 178 |
| Parameter source should be final. | 179 |
| 'source' hides a field. | 179 |
| Expected @param tag for 'source'. | 179 |
| Parameter view should be final. | 179 |
| 'view' hides a field. | 179 |
| Expected @param tag for 'view'. | 179 |
| Line is longer than 80 characters (found 96). | 196 |
| Unused @throws tag for 'NullPointerException'. | 196 |
| Line is longer than 80 characters (found 91). | 197 |
| Unused @throws tag for 'IllegalArgumentException'. | 197 |
| Parameter xrefDatabaseConstant should be final. | 199 |
| Line contains a tab character. | 200 |
| Parameter specificUrl should be final. | 200 |
| Parameter accession should be final. | 200 |
| Parameter name should be final. | 200 |
| Parameter source should be final. | 201 |
| Expected @param tag for 'source'. | 201 |
| Parameter view should be final. | 201 |
| Expected @param tag for 'view'. | 201 |
| 'if' construct must use '{}'s. | 202 |
| Line is longer than 80 characters (found 123). | 202 |
| 'if' construct must use '{}'s. | 203 |
| Line is longer than 80 characters (found 95). | 203 |
| 'if' construct must use '{}'s. | 204 |
| Line is longer than 80 characters (found 91). | 204 |
| Line is longer than 80 characters (found 89). | 207 |
| Line is longer than 80 characters (found 83). | 208 |
| '{' is not preceded with whitespace. | 209 |
| Line contains a tab character. | 210 |
| '{' is not preceded with whitespace. | 210 |
| Line contains a tab character. | 212 |
| Line is longer than 80 characters (found 91). | 213 |
| Line contains a tab character. | 213 |
| Line contains a tab character. | 214 |
| Line contains a tab character. | 215 |
| Line contains a tab character. | 216 |
| Line contains a tab character. | 217 |
| 'if' construct must use '{}'s. | 220 |
| Line is longer than 80 characters (found 105). | 220 |
| '&&' should be on a new line. | 220 |
| Line is longer than 80 characters (found 114). | 222 |
| Line is longer than 80 characters (found 92). | 224 |
| Expected an @return tag. | 238 |
| Line is longer than 80 characters (found 128). | 238 |
| Parameter xrefDatabaseConstant should be final. | 238 |
| Expected @param tag for 'xrefDatabaseConstant'. | 238 |
| Parameter specificUrl should be final. | 238 |
| Expected @param tag for 'specificUrl'. | 238 |
| Parameter accession should be final. | 238 |
| Expected @param tag for 'accession'. | 238 |
| Parameter name should be final. | 238 |
| Expected @param tag for 'name'. | 238 |
| Line is longer than 80 characters (found 109). | 239 |
| Parameter source should be final. | 239 |
| Expected @param tag for 'source'. | 239 |
| Parameter view should be final. | 239 |
| Expected @param tag for 'view'. | 239 |
| Parameter dataComment should be final. | 239 |
| Expected @param tag for 'dataComment'. | 239 |
| '{' is not preceded with whitespace. | 239 |
| Line is longer than 80 characters (found 107). | 240 |
| Unused @throws tag for 'NullPointerException'. | 250 |
| Parameter databaseConstant should be final. | 252 |
| 'if' construct must use '{}'s. | 253 |
| Line is longer than 80 characters (found 115). | 253 |
| Line is longer than 80 characters (found 81). | 257 |
| Missing a Javadoc comment. | 257 |
| Parameter databaseConstant should be final. | 257 |
| 'if' construct must use '{}'s. | 258 |
| Line is longer than 80 characters (found 115). | 258 |
| Line is longer than 80 characters (found 88). | 267 |
| Line is longer than 80 characters (found 97). | 269 |
| Unused @throws tag for 'NullPointerException'. | 274 |
| Parameter link should be final. | 276 |
| '?' is not preceded with whitespace. | 287 |
| '?' should be on a new line. | 287 |
| Avoid inline conditionals. | 287 |
| Line is longer than 80 characters (found 82). | 288 |
| '?' is not preceded with whitespace. | 288 |
| '?' should be on a new line. | 288 |
| Avoid inline conditionals. | 288 |
| Parameter o should be final. | 298 |
| 'if' construct must use '{}'s. | 299 |
| 'if' construct must use '{}'s. | 300 |
| 'if' construct must use '{}'s. | 304 |
| Line is longer than 80 characters (found 113). | 304 |
| Avoid inline conditionals. | 304 |
| 'if' construct must use '{}'s. | 305 |
| Line is longer than 80 characters (found 93). | 305 |
| Avoid inline conditionals. | 305 |
| 'if' construct must use '{}'s. | 306 |
| Line is longer than 80 characters (found 101). | 306 |
| Avoid inline conditionals. | 306 |
| 'if' construct must use '{}'s. | 307 |
| Line is longer than 80 characters (found 121). | 307 |
| Avoid inline conditionals. | 307 |
| 'if' construct must use '{}'s. | 308 |
| Line is longer than 80 characters (found 93). | 308 |
| Avoid inline conditionals. | 308 |
| 'if' construct must use '{}'s. | 309 |
| Line is longer than 80 characters (found 137). | 309 |
| Avoid inline conditionals. | 309 |
| '!=' should be on a new line. | 309 |
| Line is longer than 80 characters (found 108). | 310 |
| Line is longer than 80 characters (found 82). | 323 |
| Avoid inline conditionals. | 323 |
| '29' is a magic number. | 324 |
| Avoid inline conditionals. | 324 |
| '29' is a magic number. | 325 |
| Avoid inline conditionals. | 325 |
| '29' is a magic number. | 326 |
| Avoid inline conditionals. | 326 |
| '29' is a magic number. | 327 |
| Avoid inline conditionals. | 327 |
| '29' is a magic number. | 328 |
| Avoid inline conditionals. | 328 |
| '||' should be on a new line. | 365 |
| '||' should be on a new line. | 366 |
| 'if' construct must use '{}'s. | 371 |
| Line is longer than 80 characters (found 134). | 371 |
| 'if' construct must use '{}'s. | 373 |
| Line is longer than 80 characters (found 92). | 379 |
| Unused @throws tag for 'NullPointerException'. | 383 |
| Parameter ec should be final. | 385 |
| 'if' construct must use '{}'s. | 386 |
| '{' is not preceded with whitespace. | 387 |
| Line contains a tab character. | 388 |
| Line contains a tab character. | 389 |
| '?' is not preceded with whitespace. | 390 |
| Avoid inline conditionals. | 390 |
| '||' should be on a new line. | 392 |
| '||' should be on a new line. | 393 |
| '||' should be on a new line. | 394 |
| '||' should be on a new line. | 395 |
| '||' should be on a new line. | 396 |
| '||' should be on a new line. | 397 |
| '{' is not preceded with whitespace. | 398 |
| '{' is not preceded with whitespace. | 403 |
| Line contains a tab character. | 404 |
| Line contains a tab character. | 406 |
| Line contains a tab character. | 407 |
| Line contains a tab character. | 408 |
| Line contains a tab character. | 409 |
| Line contains a tab character. | 410 |
| Missing a Javadoc comment. | 415 |
| Missing a Javadoc comment. | 419 |
| Missing a Javadoc comment. | 423 |
| Missing a Javadoc comment. | 427 |
| Missing a Javadoc comment. | 431 |
| Missing a Javadoc comment. | 435 |
| Missing a Javadoc comment. | 439 |
| Missing a Javadoc comment. | 443 |
| Parameter comment should be final. | 443 |
| Violation | Message | Line |
|---|---|---|
| Class EnzymeName should be declared as final. | 26 |
| Line is longer than 80 characters (found 118). | 28 |
| Missing a Javadoc comment. | 28 |
| Name 'UNDEF' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 28 |
| Variable 'UNDEF' must be private and have accessor methods. | 28 |
| Line is longer than 80 characters (found 104). | 29 |
| Missing a Javadoc comment. | 31 |
| Missing a Javadoc comment. | 33 |
| Missing a Javadoc comment. | 35 |
| Missing a Javadoc comment. | 37 |
| Missing a Javadoc comment. | 39 |
| Line is longer than 80 characters (found 122). | 46 |
| Line is longer than 80 characters (found 128). | 47 |
| Line is longer than 80 characters (found 101). | 49 |
| Parameter name should be final. | 49 |
| 'name' hides a field. | 49 |
| Parameter type should be final. | 49 |
| 'type' hides a field. | 49 |
| Parameter qualifier should be final. | 49 |
| 'qualifier' hides a field. | 49 |
| Parameter source should be final. | 50 |
| 'source' hides a field. | 50 |
| Expected @param tag for 'source'. | 50 |
| Parameter view should be final. | 50 |
| 'view' hides a field. | 50 |
| Expected @param tag for 'view'. | 50 |
| Line is longer than 80 characters (found 115). | 58 |
| Missing a Javadoc comment. | 58 |
| Parameter name should be final. | 58 |
| Parameter type should be final. | 58 |
| Parameter qualifier should be final. | 58 |
| Line is longer than 80 characters (found 90). | 59 |
| Parameter source should be final. | 59 |
| Parameter view should be final. | 59 |
| 'if' construct must use '{}'s. | 60 |
| Line is longer than 80 characters (found 101). | 60 |
| 'if' construct must use '{}'s. | 61 |
| Line is longer than 80 characters (found 109). | 61 |
| 'if' construct must use '{}'s. | 62 |
| Line is longer than 80 characters (found 108). | 62 |
| Line is longer than 80 characters (found 100). | 67 |
| Unused @throws tag for 'NullPointerException'. | 71 |
| Unused @throws tag for 'IllegalArgumentException'. | 72 |
| Line is longer than 80 characters (found 117). | 74 |
| Parameter name should be final. | 74 |
| Parameter source should be final. | 74 |
| Expected @param tag for 'source'. | 74 |
| Parameter view should be final. | 74 |
| Expected @param tag for 'view'. | 74 |
| 'if' construct must use '{}'s. | 75 |
| Line is longer than 80 characters (found 91). | 75 |
| 'if' construct must use '{}'s. | 76 |
| Line is longer than 80 characters (found 95). | 76 |
| 'if' construct must use '{}'s. | 77 |
| Line is longer than 80 characters (found 91). | 77 |
| 'if' construct must use '{}'s. | 78 |
| Line is longer than 80 characters (found 99). | 78 |
| Line is longer than 80 characters (found 90). | 85 |
| Line is longer than 80 characters (found 83). | 88 |
| Unused @throws tag for 'NullPointerException'. | 89 |
| Unused @throws tag for 'IllegalArgumentException'. | 90 |
| Line is longer than 80 characters (found 121). | 92 |
| Parameter name should be final. | 92 |
| Parameter source should be final. | 92 |
| Expected @param tag for 'source'. | 92 |
| Parameter view should be final. | 92 |
| Expected @param tag for 'view'. | 92 |
| 'if' construct must use '{}'s. | 93 |
| Line is longer than 80 characters (found 91). | 93 |
| 'if' construct must use '{}'s. | 94 |
| Line is longer than 80 characters (found 95). | 94 |
| 'if' construct must use '{}'s. | 95 |
| Line is longer than 80 characters (found 91). | 95 |
| 'if' construct must use '{}'s. | 96 |
| Line is longer than 80 characters (found 99). | 96 |
| Line is longer than 80 characters (found 82). | 103 |
| Line is longer than 80 characters (found 128). | 106 |
| Line is longer than 80 characters (found 107). | 108 |
| Unused @throws tag for 'NullPointerException'. | 108 |
| Line is longer than 80 characters (found 99). | 109 |
| Unused @throws tag for 'IllegalArgumentException'. | 109 |
| Line is longer than 80 characters (found 97). | 111 |
| Parameter name should be final. | 111 |
| Parameter qualifier should be final. | 111 |
| Line is longer than 80 characters (found 101). | 112 |
| Parameter source should be final. | 112 |
| Expected @param tag for 'source'. | 112 |
| Parameter view should be final. | 112 |
| Expected @param tag for 'view'. | 112 |
| 'if' construct must use '{}'s. | 113 |
| Line is longer than 80 characters (found 91). | 113 |
| 'if' construct must use '{}'s. | 114 |
| Line is longer than 80 characters (found 101). | 114 |
| 'if' construct must use '{}'s. | 115 |
| Line is longer than 80 characters (found 95). | 115 |
| 'if' construct must use '{}'s. | 116 |
| Line is longer than 80 characters (found 91). | 116 |
| 'if' construct must use '{}'s. | 117 |
| Line is longer than 80 characters (found 99). | 117 |
| Line is longer than 80 characters (found 92). | 119 |
| Line is longer than 80 characters (found 129). | 124 |
| Parameter name should be final. | 126 |
| 'name' hides a field. | 126 |
| Line is longer than 80 characters (found 93). | 135 |
| Parameter o should be final. | 140 |
| 'if' construct must use '{}'s. | 141 |
| 'if' construct must use '{}'s. | 142 |
| 'if' construct must use '{}'s. | 146 |
| Line is longer than 80 characters (found 93). | 146 |
| Avoid inline conditionals. | 146 |
| 'if' construct must use '{}'s. | 147 |
| Line is longer than 80 characters (found 113). | 147 |
| Avoid inline conditionals. | 147 |
| 'if' construct must use '{}'s. | 148 |
| Line is longer than 80 characters (found 101). | 148 |
| Avoid inline conditionals. | 148 |
| 'if' construct must use '{}'s. | 149 |
| Line is longer than 80 characters (found 93). | 149 |
| Avoid inline conditionals. | 149 |
| 'if' construct must use '{}'s. | 150 |
| Line is longer than 80 characters (found 93). | 150 |
| Avoid inline conditionals. | 150 |
| Avoid inline conditionals. | 162 |
| '29' is a magic number. | 163 |
| Avoid inline conditionals. | 163 |
| '29' is a magic number. | 164 |
| Avoid inline conditionals. | 164 |
| '29' is a magic number. | 165 |
| Avoid inline conditionals. | 165 |
| '29' is a magic number. | 166 |
| Avoid inline conditionals. | 166 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 14 |
| Missing a Javadoc comment. | 16 |
| Missing a Javadoc comment. | 18 |
| Missing a Javadoc comment. | 20 |
| Missing a Javadoc comment. | 22 |
| Missing a Javadoc comment. | 24 |
| Line is longer than 80 characters (found 136). | 35 |
| Unused @throws tag for 'NullPointerException'. | 35 |
| Unused @throws tag for 'IllegalArgumentException'. | 36 |
| Line is longer than 80 characters (found 105). | 38 |
| Parameter ec should be final. | 38 |
| 'ec' hides a field. | 38 |
| Parameter className should be final. | 38 |
| 'className' hides a field. | 38 |
| Parameter subclassName should be final. | 38 |
| 'subclassName' hides a field. | 38 |
| Parameter name should be final. | 38 |
| 'name' hides a field. | 38 |
| Parameter description should be final. | 39 |
| 'description' hides a field. | 39 |
| Parameter entries should be final. | 39 |
| 'entries' hides a field. | 39 |
| 'if' construct must use '{}'s. | 40 |
| Avoid inline conditionals. | 45 |
| Avoid inline conditionals. | 46 |
| Line is longer than 80 characters (found 116). | 54 |
| Unused @throws tag for 'NullPointerException'. | 55 |
| Method 'compareTo' is not designed for extension - needs to be abstract, final or empty. | 57 |
| Parameter o should be final. | 57 |
| 'if' construct must use '{}'s. | 58 |
| Line is longer than 80 characters (found 85). | 58 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 69 |
| Parameter o should be final. | 69 |
| 'if' construct must use '{}'s. | 70 |
| 'if' construct must use '{}'s. | 71 |
| 'if' construct must use '{}'s. | 75 |
| Line is longer than 80 characters (found 127). | 75 |
| Avoid inline conditionals. | 75 |
| 'if' construct must use '{}'s. | 76 |
| Line is longer than 80 characters (found 135). | 76 |
| Avoid inline conditionals. | 76 |
| 'if' construct must use '{}'s. | 77 |
| Line is longer than 80 characters (found 99). | 77 |
| Avoid inline conditionals. | 77 |
| 'if' construct must use '{}'s. | 78 |
| Line is longer than 80 characters (found 119). | 78 |
| Avoid inline conditionals. | 78 |
| 'if' construct must use '{}'s. | 79 |
| Line is longer than 80 characters (found 107). | 79 |
| Avoid inline conditionals. | 79 |
| 'if' construct must use '{}'s. | 80 |
| Line is longer than 80 characters (found 139). | 80 |
| Avoid inline conditionals. | 80 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 90 |
| Avoid inline conditionals. | 92 |
| '29' is a magic number. | 93 |
| Avoid inline conditionals. | 93 |
| '29' is a magic number. | 94 |
| Avoid inline conditionals. | 94 |
| '29' is a magic number. | 95 |
| Avoid inline conditionals. | 95 |
| '29' is a magic number. | 96 |
| Avoid inline conditionals. | 96 |
| '29' is a magic number. | 97 |
| Avoid inline conditionals. | 97 |
| Method 'getEc' is not designed for extension - needs to be abstract, final or empty. | 104 |
| Missing a Javadoc comment. | 104 |
| Method 'getClassName' is not designed for extension - needs to be abstract, final or empty. | 108 |
| Missing a Javadoc comment. | 108 |
| Method 'getSubclassName' is not designed for extension - needs to be abstract, final or empty. | 112 |
| Missing a Javadoc comment. | 112 |
| Method 'getName' is not designed for extension - needs to be abstract, final or empty. | 116 |
| Missing a Javadoc comment. | 116 |
| Method 'getDescription' is not designed for extension - needs to be abstract, final or empty. | 120 |
| Missing a Javadoc comment. | 120 |
| Method 'getEntries' is not designed for extension - needs to be abstract, final or empty. | 124 |
| Missing a Javadoc comment. | 124 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 14 |
| Missing a Javadoc comment. | 16 |
| Missing a Javadoc comment. | 18 |
| Missing a Javadoc comment. | 20 |
| Missing a Javadoc comment. | 22 |
| Line is longer than 80 characters (found 85). | 31 |
| Line is longer than 80 characters (found 84). | 32 |
| Unused @throws tag for 'NullPointerException'. | 32 |
| Unused @throws tag for 'IllegalArgumentException'. | 33 |
| Line is longer than 80 characters (found 101). | 35 |
| Parameter ec should be final. | 35 |
| 'ec' hides a field. | 35 |
| Parameter className should be final. | 35 |
| 'className' hides a field. | 35 |
| Parameter name should be final. | 35 |
| 'name' hides a field. | 35 |
| Parameter description should be final. | 35 |
| 'description' hides a field. | 35 |
| Line contains a tab character. | 36 |
| Parameter subSubclasses should be final. | 36 |
| 'subSubclasses' hides a field. | 36 |
| 'if' construct must use '{}'s. | 37 |
| Line is longer than 80 characters (found 86). | 38 |
| Line is longer than 80 characters (found 116). | 50 |
| Method 'compareTo' is not designed for extension - needs to be abstract, final or empty. | 52 |
| Parameter enzymeSubclass should be final. | 52 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 62 |
| Parameter o should be final. | 62 |
| 'if' construct must use '{}'s. | 63 |
| 'if' construct must use '{}'s. | 64 |
| 'if' construct must use '{}'s. | 68 |
| Line is longer than 80 characters (found 121). | 68 |
| Avoid inline conditionals. | 68 |
| 'if' construct must use '{}'s. | 69 |
| Line is longer than 80 characters (found 129). | 69 |
| Avoid inline conditionals. | 69 |
| 'if' construct must use '{}'s. | 70 |
| Line is longer than 80 characters (found 93). | 70 |
| Avoid inline conditionals. | 70 |
| 'if' construct must use '{}'s. | 71 |
| Line is longer than 80 characters (found 101). | 71 |
| Avoid inline conditionals. | 71 |
| 'if' construct must use '{}'s. | 72 |
| Line is longer than 80 characters (found 137). | 72 |
| Avoid inline conditionals. | 72 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 82 |
| Avoid inline conditionals. | 84 |
| '29' is a magic number. | 85 |
| Avoid inline conditionals. | 85 |
| '29' is a magic number. | 86 |
| Avoid inline conditionals. | 86 |
| '29' is a magic number. | 87 |
| Avoid inline conditionals. | 87 |
| Line is longer than 80 characters (found 82). | 88 |
| '29' is a magic number. | 88 |
| Avoid inline conditionals. | 88 |
| Method 'getEc' is not designed for extension - needs to be abstract, final or empty. | 95 |
| Missing a Javadoc comment. | 95 |
| Method 'getClassName' is not designed for extension - needs to be abstract, final or empty. | 99 |
| Missing a Javadoc comment. | 99 |
| Method 'getName' is not designed for extension - needs to be abstract, final or empty. | 103 |
| Missing a Javadoc comment. | 103 |
| Method 'getDescription' is not designed for extension - needs to be abstract, final or empty. | 107 |
| Missing a Javadoc comment. | 107 |
| Method 'getSubSubclasses' is not designed for extension - needs to be abstract, final or empty. | 111 |
| Missing a Javadoc comment. | 111 |
| Violation | Message | Line |
|---|---|---|
| Line contains a tab character. | 12 |
| Missing a Javadoc comment. | 12 |
| Redundant 'public' modifier. | 12 |
| Line has trailing spaces. | 13 |
| Line contains a tab character. | 13 |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| Line is longer than 80 characters (found 92). | 4 |
| Line contains a tab character. | 11 |
| Missing a Javadoc comment. | 11 |
| Line has trailing spaces. | 12 |
| Line contains a tab character. | 12 |
| Line contains a tab character. | 13 |
| Missing a Javadoc comment. | 13 |
| Variable 'messageKey' must be private and have accessor methods. | 13 |
| Line contains a tab character. | 14 |
| Missing a Javadoc comment. | 14 |
| Variable 'property' must be private and have accessor methods. | 14 |
| Missing a Javadoc comment. | 16 |
| Missing a Javadoc comment. | 20 |
| Parameter message should be final. | 20 |
| Missing a Javadoc comment. | 26 |
| Parameter property should be final. | 26 |
| 'property' hides a field. | 26 |
| Parameter messageKey should be final. | 26 |
| 'messageKey' hides a field. | 26 |
| Method 'getProperty' is not designed for extension - needs to be abstract, final or empty. | 32 |
| Missing a Javadoc comment. | 32 |
| Method 'setProperty' is not designed for extension - needs to be abstract, final or empty. | 36 |
| Missing a Javadoc comment. | 36 |
| Parameter property should be final. | 36 |
| 'property' hides a field. | 36 |
| Method 'getMessageKey' is not designed for extension - needs to be abstract, final or empty. | 40 |
| Missing a Javadoc comment. | 40 |
| Method 'setMessageKey' is not designed for extension - needs to be abstract, final or empty. | 44 |
| Missing a Javadoc comment. | 44 |
| Parameter messageKey should be final. | 44 |
| 'messageKey' hides a field. | 44 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 116). | 5 |
| Line contains a tab character. | 13 |
| Missing a Javadoc comment. | 13 |
| Line contains a tab character. | 15 |
| Missing a Javadoc comment. | 15 |
| '{' is not preceded with whitespace. | 15 |
| '{' is not followed by whitespace. | 15 |
| '}' is not preceded with whitespace. | 15 |
| Line contains a tab character. | 17 |
| Missing a Javadoc comment. | 17 |
| Parameter message should be final. | 17 |
| Line contains a tab character. | 18 |
| Line contains a tab character. | 19 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 119). | 11 |
| Line contains a tab character. | 19 |
| Missing a Javadoc comment. | 19 |
| Line contains a tab character. | 21 |
| Missing a Javadoc comment. | 21 |
| '{' is not preceded with whitespace. | 21 |
| '{' is not followed by whitespace. | 21 |
| '}' is not preceded with whitespace. | 21 |
| Line contains a tab character. | 23 |
| Missing a Javadoc comment. | 23 |
| Parameter message should be final. | 23 |
| Line contains a tab character. | 24 |
| Line contains a tab character. | 25 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 83). | 5 |
| Line contains a tab character. | 17 |
| Missing a Javadoc comment. | 17 |
| Line contains a tab character. | 19 |
| Missing a Javadoc comment. | 19 |
| '{' is not preceded with whitespace. | 19 |
| '{' is not followed by whitespace. | 19 |
| '}' is not preceded with whitespace. | 19 |
| Line contains a tab character. | 21 |
| Missing a Javadoc comment. | 21 |
| Parameter message should be final. | 21 |
| Line contains a tab character. | 22 |
| Line contains a tab character. | 23 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 84). | 5 |
| Line contains a tab character. | 17 |
| Missing a Javadoc comment. | 17 |
| Line contains a tab character. | 19 |
| Missing a Javadoc comment. | 19 |
| '{' is not preceded with whitespace. | 19 |
| '{' is not followed by whitespace. | 19 |
| '}' is not preceded with whitespace. | 19 |
| Line contains a tab character. | 21 |
| Missing a Javadoc comment. | 21 |
| Parameter message should be final. | 21 |
| Line contains a tab character. | 22 |
| Line contains a tab character. | 23 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 103). | 6 |
| Missing a Javadoc comment. | 13 |
| Missing a Javadoc comment. | 15 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 32 |
| Parameter o should be final. | 32 |
| 'if' construct must use '{}'s. | 33 |
| 'if' construct must use '{}'s. | 34 |
| 'if' construct must use '{}'s. | 35 |
| 'if' construct must use '{}'s. | 39 |
| Line is longer than 80 characters (found 91). | 39 |
| Avoid inline conditionals. | 39 |
| 'if' construct must use '{}'s. | 40 |
| Line is longer than 80 characters (found 95). | 40 |
| Avoid inline conditionals. | 40 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 50 |
| '29' is a magic number. | 52 |
| Avoid inline conditionals. | 52 |
| '29' is a magic number. | 53 |
| Avoid inline conditionals. | 53 |
| Line has trailing spaces. | 57 |
| Method 'getStatus' is not designed for extension - needs to be abstract, final or empty. | 62 |
| Missing a Javadoc comment. | 62 |
| Method 'setStatus' is not designed for extension - needs to be abstract, final or empty. | 66 |
| Missing a Javadoc comment. | 66 |
| Parameter status should be final. | 66 |
| 'status' hides a field. | 66 |
| 'if' construct must use '{}'s. | 67 |
| Line is longer than 80 characters (found 95). | 67 |
| Method 'getTimeout' is not designed for extension - needs to be abstract, final or empty. | 71 |
| Missing a Javadoc comment. | 71 |
| Method 'setTimeout' is not designed for extension - needs to be abstract, final or empty. | 75 |
| Missing a Javadoc comment. | 75 |
| Parameter timeout should be final. | 75 |
| 'timeout' hides a field. | 75 |
| 'if' construct must use '{}'s. | 76 |
| Line is longer than 80 characters (found 97). | 76 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 111). | 9 |
| Line is longer than 80 characters (found 84). | 17 |
| Missing a Javadoc comment. | 18 |
| Variable 'groupId' must be private and have accessor methods. | 18 |
| Missing a Javadoc comment. | 20 |
| Variable 'eventId' must be private and have accessor methods. | 20 |
| Missing a Javadoc comment. | 22 |
| Variable 'beforeNode' must be private and have accessor methods. | 22 |
| Missing a Javadoc comment. | 24 |
| Variable 'afterNode' must be private and have accessor methods. | 24 |
| Missing a Javadoc comment. | 26 |
| Variable 'eventClass' must be private and have accessor methods. | 26 |
| Missing a Javadoc comment. | 28 |
| Variable 'date' must be private and have accessor methods. | 28 |
| Missing a Javadoc comment. | 30 |
| Variable 'note' must be private and have accessor methods. | 30 |
| Line is longer than 80 characters (found 116). | 50 |
| Method 'compareTo' is not designed for extension - needs to be abstract, final or empty. | 52 |
| Parameter historyEvent should be final. | 52 |
| 'if' construct must use '{}'s. | 53 |
| 'if' construct must use '{}'s. | 54 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 65 |
| Parameter o should be final. | 65 |
| 'if' construct must use '{}'s. | 66 |
| 'if' construct must use '{}'s. | 67 |
| 'if' construct must use '{}'s. | 68 |
| 'if' construct must use '{}'s. | 72 |
| Line is longer than 80 characters (found 103). | 72 |
| Avoid inline conditionals. | 72 |
| 'if' construct must use '{}'s. | 73 |
| Line is longer than 80 characters (found 107). | 73 |
| Avoid inline conditionals. | 73 |
| 'if' construct must use '{}'s. | 74 |
| Line is longer than 80 characters (found 83). | 74 |
| Avoid inline conditionals. | 74 |
| 'if' construct must use '{}'s. | 75 |
| Line is longer than 80 characters (found 107). | 75 |
| Avoid inline conditionals. | 75 |
| 'if' construct must use '{}'s. | 76 |
| Line is longer than 80 characters (found 95). | 76 |
| Avoid inline conditionals. | 76 |
| 'if' construct must use '{}'s. | 77 |
| Line is longer than 80 characters (found 95). | 77 |
| Avoid inline conditionals. | 77 |
| 'if' construct must use '{}'s. | 78 |
| Line is longer than 80 characters (found 83). | 78 |
| Avoid inline conditionals. | 78 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 88 |
| '29' is a magic number. | 90 |
| Avoid inline conditionals. | 90 |
| '29' is a magic number. | 91 |
| Avoid inline conditionals. | 91 |
| '29' is a magic number. | 92 |
| Avoid inline conditionals. | 92 |
| '29' is a magic number. | 93 |
| Avoid inline conditionals. | 93 |
| '29' is a magic number. | 94 |
| Avoid inline conditionals. | 94 |
| '29' is a magic number. | 95 |
| Avoid inline conditionals. | 95 |
| '29' is a magic number. | 96 |
| Avoid inline conditionals. | 96 |
| Method 'isSuccessor' is not designed for extension - needs to be abstract, final or empty. | 106 |
| Parameter node should be final. | 106 |
| 'if' construct must use '{}'s. | 107 |
| Unused @throws tag for 'NullPointerException'. | 119 |
| Method 'getRelative' is not designed for extension - needs to be abstract, final or empty. | 121 |
| Parameter node should be final. | 121 |
| 'if' construct must use '{}'s. | 122 |
| 'if' construct must use '{}'s. | 124 |
| 'if' construct must use '{}'s. | 126 |
| Line is longer than 80 characters (found 101). | 126 |
| ')' is preceded with whitespace. | 126 |
| Method 'getGroupId' is not designed for extension - needs to be abstract, final or empty. | 130 |
| Missing a Javadoc comment. | 130 |
| Method 'setGroupId' is not designed for extension - needs to be abstract, final or empty. | 134 |
| Missing a Javadoc comment. | 134 |
| Parameter groupId should be final. | 134 |
| 'groupId' hides a field. | 134 |
| 'if' construct must use '{}'s. | 135 |
| Line is longer than 80 characters (found 97). | 135 |
| Method 'getEventId' is not designed for extension - needs to be abstract, final or empty. | 139 |
| Missing a Javadoc comment. | 139 |
| Method 'setEventId' is not designed for extension - needs to be abstract, final or empty. | 143 |
| Missing a Javadoc comment. | 143 |
| Parameter eventId should be final. | 143 |
| 'eventId' hides a field. | 143 |
| 'if' construct must use '{}'s. | 144 |
| Line is longer than 80 characters (found 97). | 144 |
| Method 'getBeforeNode' is not designed for extension - needs to be abstract, final or empty. | 148 |
| Missing a Javadoc comment. | 148 |
| Method 'setBeforeNode' is not designed for extension - needs to be abstract, final or empty. | 152 |
| Missing a Javadoc comment. | 152 |
| Parameter beforeNode should be final. | 152 |
| 'beforeNode' hides a field. | 152 |
| Method 'getAfterNode' is not designed for extension - needs to be abstract, final or empty. | 156 |
| Missing a Javadoc comment. | 156 |
| Method 'setAfterNode' is not designed for extension - needs to be abstract, final or empty. | 160 |
| Missing a Javadoc comment. | 160 |
| Parameter afterNode should be final. | 160 |
| 'afterNode' hides a field. | 160 |
| Method 'getEventClass' is not designed for extension - needs to be abstract, final or empty. | 164 |
| Missing a Javadoc comment. | 164 |
| Method 'setEventClass' is not designed for extension - needs to be abstract, final or empty. | 168 |
| Missing a Javadoc comment. | 168 |
| Parameter eventClass should be final. | 168 |
| 'eventClass' hides a field. | 168 |
| 'if' construct must use '{}'s. | 169 |
| Line is longer than 80 characters (found 103). | 169 |
| Method 'getDate' is not designed for extension - needs to be abstract, final or empty. | 173 |
| Missing a Javadoc comment. | 173 |
| Method 'setDate' is not designed for extension - needs to be abstract, final or empty. | 177 |
| Missing a Javadoc comment. | 177 |
| Parameter date should be final. | 177 |
| 'date' hides a field. | 177 |
| 'if' construct must use '{}'s. | 178 |
| Line is longer than 80 characters (found 91). | 178 |
| Method 'getNote' is not designed for extension - needs to be abstract, final or empty. | 182 |
| Missing a Javadoc comment. | 182 |
| Method 'setNote' is not designed for extension - needs to be abstract, final or empty. | 186 |
| Missing a Javadoc comment. | 186 |
| Parameter note should be final. | 186 |
| 'note' hides a field. | 186 |
| 'if' construct must use '{}'s. | 187 |
| Line is longer than 80 characters (found 91). | 187 |
| Violation | Message | Line |
|---|---|---|
| Using the '.*' form of import should be avoided - java.util.*. | 5 |
| Line is longer than 80 characters (found 119). | 10 |
| Line is longer than 80 characters (found 120). | 11 |
| Line is longer than 80 characters (found 91). | 14 |
| Unused @throws tag for 'NullPointerException'. | 32 |
| '(' is preceded with whitespace. | 34 |
| Parameter rootNode should be final. | 34 |
| 'rootNode' hides a field. | 34 |
| 'if' construct must use '{}'s. | 35 |
| Line is longer than 80 characters (found 103). | 35 |
| '(' is followed by whitespace. | 35 |
| ')' is preceded with whitespace. | 35 |
| Line is longer than 80 characters (found 86). | 40 |
| Line is longer than 80 characters (found 114). | 42 |
| Line is longer than 80 characters (found 114). | 43 |
| Method 'isDeletedRootNode' is not designed for extension - needs to be abstract, final or empty. | 49 |
| '(' is preceded with whitespace. | 49 |
| Line is longer than 80 characters (found 96). | 50 |
| '&&' is not preceded with whitespace. | 50 |
| '&&' should be on a new line. | 50 |
| '&&' should be on a new line. | 51 |
| Line is longer than 80 characters (found 86). | 56 |
| Line is longer than 80 characters (found 114). | 58 |
| Line is longer than 80 characters (found 114). | 59 |
| Method 'isTransferredRootNode' is not designed for extension - needs to be abstract, final or empty. | 65 |
| '(' is preceded with whitespace. | 65 |
| Line is longer than 80 characters (found 97). | 66 |
| '&&' should be on a new line. | 66 |
| '&&' should be on a new line. | 67 |
| Method 'getRootNode' is not designed for extension - needs to be abstract, final or empty. | 75 |
| Missing a Javadoc comment. | 75 |
| '(' is preceded with whitespace. | 75 |
| Method 'getEdges' is not designed for extension - needs to be abstract, final or empty. | 79 |
| Missing a Javadoc comment. | 79 |
| '(' is preceded with whitespace. | 79 |
| Method 'getLatestHistoryEventOfAll' is not designed for extension - needs to be abstract, final or empty. | 88 |
| '(' is preceded with whitespace. | 88 |
| Line is longer than 80 characters (found 90). | 89 |
| 'if' construct must use '{}'s. | 90 |
| '(' is followed by whitespace. | 90 |
| ')' is preceded with whitespace. | 90 |
| Line contains a tab character. | 92 |
| Method 'getLatestHistoryEventOfRoot' is not designed for extension - needs to be abstract, final or empty. | 100 |
| '(' is preceded with whitespace. | 100 |
| Line is longer than 80 characters (found 85). | 101 |
| 'if' construct must use '{}'s. | 102 |
| '(' is followed by whitespace. | 102 |
| ')' is preceded with whitespace. | 102 |
| Line contains a tab character. | 104 |
| Method 'getLatestRelevantHistoryEventOfRoot' is not designed for extension - needs to be abstract, final or empty. | 112 |
| '(' is preceded with whitespace. | 112 |
| Line is longer than 80 characters (found 90). | 113 |
| Line contains a tab character. | 113 |
| 'if' construct must use '{}'s. | 114 |
| Line contains a tab character. | 114 |
| '(' is followed by whitespace. | 114 |
| ')' is preceded with whitespace. | 114 |
| Line contains a tab character. | 115 |
| Line contains a tab character. | 116 |
| Line contains a tab character. | 117 |
| Line contains a tab character. | 118 |
| '(' is followed by whitespace. | 118 |
| '-' is not preceded with whitespace. | 118 |
| '-' is not followed by whitespace. | 118 |
| ')' is preceded with whitespace. | 118 |
| Line contains a tab character. | 119 |
| Line contains a tab character. | 120 |
| Line contains a tab character. | 121 |
| '(' is followed by whitespace. | 121 |
| ')' is preceded with whitespace. | 121 |
| '{' is not preceded with whitespace. | 121 |
| Line contains a tab character. | 122 |
| '(' is followed by whitespace. | 122 |
| ')' is preceded with whitespace. | 122 |
| Line contains a tab character. | 123 |
| Line contains a tab character. | 124 |
| Line contains a tab character. | 125 |
| Line contains a tab character. | 126 |
| Line is longer than 80 characters (found 98). | 128 |
| Line contains a tab character. | 128 |
| Line is longer than 80 characters (found 81). | 129 |
| Line contains a tab character. | 129 |
| Line contains a tab character. | 130 |
| Line contains a tab character. | 131 |
| Line contains a tab character. | 132 |
| Line contains a tab character. | 133 |
| Line contains a tab character. | 134 |
| Line contains a tab character. | 135 |
| Line contains a tab character. | 136 |
| Line is longer than 80 characters (found 100). | 147 |
| '(' is preceded with whitespace. | 147 |
| Parameter node should be final. | 147 |
| Parameter visitedEdges should be final. | 147 |
| Expected @param tag for 'visitedEdges'. | 147 |
| '(' is followed by whitespace. | 157 |
| ')' is preceded with whitespace. | 157 |
| 'if' construct must use '{}'s. | 158 |
| '(' is followed by whitespace. | 158 |
| ')' is preceded with whitespace. | 158 |
| Line is longer than 80 characters (found 83). | 169 |
| Line is longer than 80 characters (found 114). | 171 |
| Line is longer than 80 characters (found 114). | 172 |
| '(' is preceded with whitespace. | 179 |
| Parameter event should be final. | 179 |
| '&&' should be on a new line. | 180 |
| '&&' should be on a new line. | 181 |
| Missing a Javadoc comment. | 185 |
| '(' is preceded with whitespace. | 185 |
| Parameter event should be final. | 185 |
| '&&' should be on a new line. | 186 |
| '&&' should be on a new line. | 187 |
| Missing a Javadoc comment. | 191 |
| Missing a Javadoc comment. | 193 |
| Missing a Javadoc comment. | 194 |
| Missing a Javadoc comment. | 195 |
| Missing a Javadoc comment. | 197 |
| '(' is preceded with whitespace. | 197 |
| Line is longer than 80 characters (found 89). | 198 |
| Line contains a tab character. | 198 |
| Line contains a tab character. | 199 |
| '(' is preceded with whitespace. | 199 |
| Parameter al1 should be final. | 199 |
| Parameter al2 should be final. | 199 |
| Line contains a tab character. | 200 |
| Line contains a tab character. | 201 |
| Line contains a tab character. | 203 |
| Line contains a tab character. | 204 |
| 'if' construct must use '{}'s. | 206 |
| Line contains a tab character. | 206 |
| '(' is followed by whitespace. | 206 |
| ')' is preceded with whitespace. | 206 |
| 'if' construct must use '{}'s. | 207 |
| Line contains a tab character. | 207 |
| '(' is followed by whitespace. | 207 |
| ')' is preceded with whitespace. | 207 |
| 'if' construct must use '{}'s. | 208 |
| Line contains a tab character. | 208 |
| '(' is followed by whitespace. | 208 |
| ')' is preceded with whitespace. | 208 |
| 'if' construct must use '{}'s. | 209 |
| Line contains a tab character. | 209 |
| '(' is followed by whitespace. | 209 |
| ')' is preceded with whitespace. | 209 |
| Line contains a tab character. | 211 |
| Line contains a tab character. | 212 |
| Line contains a tab character. | 213 |
| Line contains a tab character. | 214 |
| Line contains a tab character. | 215 |
| Missing a Javadoc comment. | 218 |
| '(' is preceded with whitespace. | 218 |
| Missing a Javadoc comment. | 222 |
| '(' is preceded with whitespace. | 222 |
| Parameter x should be final. | 222 |
| Parameter y should be final. | 222 |
| Missing a Javadoc comment. | 229 |
| '(' is preceded with whitespace. | 229 |
| Parameter x should be final. | 229 |
| Parameter y should be final. | 229 |
| Parameter value should be final. | 229 |
| Missing a Javadoc comment. | 238 |
| '(' is preceded with whitespace. | 238 |
| Parameter x should be final. | 238 |
| Parameter y should be final. | 238 |
| Missing a Javadoc comment. | 245 |
| '(' is preceded with whitespace. | 245 |
| Parameter x should be final. | 245 |
| Parameter y should be final. | 245 |
| Missing a Javadoc comment. | 254 |
| '(' is preceded with whitespace. | 254 |
| Missing a Javadoc comment. | 258 |
| '(' is preceded with whitespace. | 258 |
| Missing a Javadoc comment. | 262 |
| '(' is preceded with whitespace. | 262 |
| Missing a Javadoc comment. | 266 |
| '(' is preceded with whitespace. | 266 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 16 |
| Missing a Javadoc comment. | 18 |
| Missing a Javadoc comment. | 20 |
| Missing a Javadoc comment. | 22 |
| Line is longer than 80 characters (found 111). | 35 |
| Method 'checkForDeletion' is not designed for extension - needs to be abstract, final or empty. | 39 |
| 'if' construct must use '{}'s. | 42 |
| Line is longer than 80 characters (found 93). | 42 |
| Method 'toString' is not designed for extension - needs to be abstract, final or empty. | 47 |
| Missing a Javadoc comment. | 47 |
| Avoid inline conditionals. | 55 |
| Method 'getEnzymeEntry' is not designed for extension - needs to be abstract, final or empty. | 62 |
| Missing a Javadoc comment. | 62 |
| Method 'setEnzymeEntry' is not designed for extension - needs to be abstract, final or empty. | 66 |
| Missing a Javadoc comment. | 66 |
| Parameter enzymeEntry should be final. | 66 |
| 'enzymeEntry' hides a field. | 66 |
| Method 'getEdges' is not designed for extension - needs to be abstract, final or empty. | 70 |
| Missing a Javadoc comment. | 70 |
| Method 'setEdges' is not designed for extension - needs to be abstract, final or empty. | 74 |
| Missing a Javadoc comment. | 74 |
| Parameter edges should be final. | 74 |
| 'edges' hides a field. | 74 |
| Method 'getHistoryLine' is not designed for extension - needs to be abstract, final or empty. | 78 |
| Missing a Javadoc comment. | 78 |
| Method 'setHistoryLine' is not designed for extension - needs to be abstract, final or empty. | 82 |
| Missing a Javadoc comment. | 82 |
| Parameter historyLine should be final. | 82 |
| 'historyLine' hides a field. | 82 |
| Method 'isRoot' is not designed for extension - needs to be abstract, final or empty. | 86 |
| Missing a Javadoc comment. | 86 |
| Method 'setRoot' is not designed for extension - needs to be abstract, final or empty. | 90 |
| Missing a Javadoc comment. | 90 |
| Parameter root should be final. | 90 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 120). | 10 |
| Missing a Javadoc comment. | 18 |
| Missing a Javadoc comment. | 19 |
| Missing a Javadoc comment. | 20 |
| Missing a Javadoc comment. | 21 |
| Missing a Javadoc comment. | 23 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 30 |
| Missing a Javadoc comment. | 30 |
| Parameter o should be final. | 30 |
| 'if' construct must use '{}'s. | 31 |
| 'if' construct must use '{}'s. | 32 |
| 'if' construct must use '{}'s. | 33 |
| 'if' construct must use '{}'s. | 37 |
| 'if' construct must use '{}'s. | 38 |
| 'if' construct must use '{}'s. | 39 |
| Line is longer than 80 characters (found 99). | 39 |
| Avoid inline conditionals. | 39 |
| 'if' construct must use '{}'s. | 40 |
| Line is longer than 80 characters (found 107). | 40 |
| Avoid inline conditionals. | 40 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 45 |
| Missing a Javadoc comment. | 45 |
| '29' is a magic number. | 47 |
| '29' is a magic number. | 48 |
| '29' is a magic number. | 49 |
| Avoid inline conditionals. | 49 |
| '29' is a magic number. | 50 |
| Avoid inline conditionals. | 50 |
| Method 'getEnzymeId' is not designed for extension - needs to be abstract, final or empty. | 54 |
| Missing a Javadoc comment. | 54 |
| Method 'setEnzymeId' is not designed for extension - needs to be abstract, final or empty. | 58 |
| Missing a Javadoc comment. | 58 |
| Parameter enzymeId should be final. | 58 |
| 'enzymeId' hides a field. | 58 |
| Method 'getTimeoutId' is not designed for extension - needs to be abstract, final or empty. | 62 |
| Missing a Javadoc comment. | 62 |
| Method 'setTimeoutId' is not designed for extension - needs to be abstract, final or empty. | 66 |
| Missing a Javadoc comment. | 66 |
| Parameter timeoutId should be final. | 66 |
| 'timeoutId' hides a field. | 66 |
| Method 'getStartDate' is not designed for extension - needs to be abstract, final or empty. | 70 |
| Missing a Javadoc comment. | 70 |
| Method 'setStartDate' is not designed for extension - needs to be abstract, final or empty. | 74 |
| Missing a Javadoc comment. | 74 |
| Parameter startDate should be final. | 74 |
| 'startDate' hides a field. | 74 |
| Method 'getDueDate' is not designed for extension - needs to be abstract, final or empty. | 78 |
| Missing a Javadoc comment. | 78 |
| Method 'setDueDate' is not designed for extension - needs to be abstract, final or empty. | 82 |
| Missing a Javadoc comment. | 82 |
| Parameter dueDate should be final. | 82 |
| 'dueDate' hides a field. | 82 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 22 |
| Missing a Javadoc comment. | 24 |
| Missing a Javadoc comment. | 26 |
| Missing a Javadoc comment. | 28 |
| Missing a Javadoc comment. | 30 |
| Missing a Javadoc comment. | 32 |
| Missing a Javadoc comment. | 34 |
| Missing a Javadoc comment. | 36 |
| Unused @throws tag for 'NullPointerException'. | 53 |
| Line is longer than 80 characters (found 116). | 55 |
| More than 7 parameters (found 14). | 55 |
| Parameter id should be final. | 55 |
| Parameter authors should be final. | 55 |
| Parameter title should be final. | 55 |
| Parameter year should be final. | 55 |
| Parameter firstPage should be final. | 55 |
| 'firstPage' hides a field. | 55 |
| Parameter lastPage should be final. | 55 |
| 'lastPage' hides a field. | 55 |
| Parameter pubName should be final. | 55 |
| 'pubName' hides a field. | 55 |
| Line is longer than 80 characters (found 125). | 56 |
| Parameter edition should be final. | 56 |
| 'edition' hides a field. | 56 |
| Parameter editor should be final. | 56 |
| 'editor' hides a field. | 56 |
| Parameter volume should be final. | 56 |
| 'volume' hides a field. | 56 |
| Parameter publisher should be final. | 56 |
| 'publisher' hides a field. | 56 |
| Parameter publisherPlace should be final. | 56 |
| 'publisherPlace' hides a field. | 56 |
| Parameter view should be final. | 56 |
| Expected @param tag for 'view'. | 56 |
| Parameter source should be final. | 57 |
| Expected @param tag for 'source'. | 57 |
| 'if' construct must use '{}'s. | 59 |
| Line is longer than 80 characters (found 86). | 59 |
| '||' should be on a new line. | 59 |
| Line is longer than 80 characters (found 92). | 60 |
| Method 'toString' is not designed for extension - needs to be abstract, final or empty. | 77 |
| 'if' construct must use '{}'s. | 112 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 141 |
| Parameter o should be final. | 141 |
| 'if' construct must use '{}'s. | 142 |
| 'if' construct must use '{}'s. | 143 |
| 'if' construct must use '{}'s. | 144 |
| 'if' construct must use '{}'s. | 148 |
| Line is longer than 80 characters (found 93). | 148 |
| Avoid inline conditionals. | 148 |
| 'if' construct must use '{}'s. | 149 |
| Line is longer than 80 characters (found 89). | 149 |
| Avoid inline conditionals. | 149 |
| 'if' construct must use '{}'s. | 150 |
| Line is longer than 80 characters (found 101). | 150 |
| Avoid inline conditionals. | 150 |
| 'if' construct must use '{}'s. | 151 |
| Line is longer than 80 characters (found 93). | 151 |
| Avoid inline conditionals. | 151 |
| 'if' construct must use '{}'s. | 152 |
| Line is longer than 80 characters (found 97). | 152 |
| Avoid inline conditionals. | 152 |
| 'if' construct must use '{}'s. | 153 |
| Line is longer than 80 characters (found 101). | 153 |
| Avoid inline conditionals. | 153 |
| 'if' construct must use '{}'s. | 154 |
| Line is longer than 80 characters (found 121). | 154 |
| Avoid inline conditionals. | 154 |
| 'if' construct must use '{}'s. | 155 |
| Line is longer than 80 characters (found 89). | 155 |
| Avoid inline conditionals. | 155 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 165 |
| '29' is a magic number. | 167 |
| Avoid inline conditionals. | 167 |
| '29' is a magic number. | 168 |
| Avoid inline conditionals. | 168 |
| '29' is a magic number. | 169 |
| Avoid inline conditionals. | 169 |
| '29' is a magic number. | 170 |
| Avoid inline conditionals. | 170 |
| '29' is a magic number. | 171 |
| Avoid inline conditionals. | 171 |
| '29' is a magic number. | 172 |
| Avoid inline conditionals. | 172 |
| '29' is a magic number. | 173 |
| Avoid inline conditionals. | 173 |
| Line is longer than 80 characters (found 84). | 174 |
| '29' is a magic number. | 174 |
| Avoid inline conditionals. | 174 |
| Method 'getFirstPage' is not designed for extension - needs to be abstract, final or empty. | 181 |
| Missing a Javadoc comment. | 181 |
| Method 'getLastPage' is not designed for extension - needs to be abstract, final or empty. | 185 |
| Missing a Javadoc comment. | 185 |
| Method 'getEdition' is not designed for extension - needs to be abstract, final or empty. | 195 |
| Parameter formatted should be final. | 195 |
| 'if' construct must use '{}'s. | 196 |
| Method 'getEdition' is not designed for extension - needs to be abstract, final or empty. | 204 |
| '{' is not preceded with whitespace. | 204 |
| Method 'getEditor' is not designed for extension - needs to be abstract, final or empty. | 214 |
| Parameter formatted should be final. | 214 |
| 'if' construct must use '{}'s. | 215 |
| Method 'getEditor' is not designed for extension - needs to be abstract, final or empty. | 223 |
| '{' is not preceded with whitespace. | 223 |
| Method 'getPublisher' is not designed for extension - needs to be abstract, final or empty. | 227 |
| Missing a Javadoc comment. | 227 |
| Method 'getPublisherPlace' is not designed for extension - needs to be abstract, final or empty. | 231 |
| Missing a Javadoc comment. | 231 |
| Method 'getPubName' is not designed for extension - needs to be abstract, final or empty. | 235 |
| Missing a Javadoc comment. | 235 |
| Method 'getVolume' is not designed for extension - needs to be abstract, final or empty. | 239 |
| Missing a Javadoc comment. | 239 |
| Line is longer than 80 characters (found 86). | 247 |
| Line is longer than 80 characters (found 89). | 272 |
| Line is longer than 80 characters (found 88). | 286 |
| Line is longer than 80 characters (found 88). | 289 |
| '3' is a magic number. | 291 |
| Line is longer than 80 characters (found 88). | 292 |
| Line is longer than 80 characters (found 83). | 295 |
| '3' is a magic number. | 306 |
| Comment matches to-do format 'TODO:'. | 322 |
| Method 'toXML' is not designed for extension - needs to be abstract, final or empty. | 323 |
| Missing a Javadoc comment. | 323 |
| Parameter number should be final. | 323 |
| Parameter intenzTextXML should be final. | 323 |
| Line is longer than 80 characters (found 114). | 329 |
| Line is longer than 80 characters (found 95). | 345 |
| Line is longer than 80 characters (found 107). | 347 |
| Line is longer than 80 characters (found 94). | 353 |
| Line is longer than 80 characters (found 106). | 355 |
| Line is longer than 80 characters (found 85). | 362 |
| Line is longer than 80 characters (found 102). | 364 |
| Line is longer than 80 characters (found 114). | 366 |
| Line is longer than 80 characters (found 97). | 372 |
| Line is longer than 80 characters (found 111). | 374 |
| Missing a Javadoc comment. | 416 |
| Parameter name should be final. | 416 |
| Missing a Javadoc comment. | 426 |
| Parameter text should be final. | 426 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 16 |
| Missing a Javadoc comment. | 18 |
| Missing a Javadoc comment. | 20 |
| Missing a Javadoc comment. | 22 |
| Missing a Javadoc comment. | 24 |
| Missing a Javadoc comment. | 26 |
| Unused @throws tag for 'NullPointerException'. | 41 |
| Line is longer than 80 characters (found 102). | 43 |
| More than 7 parameters (found 12). | 43 |
| Parameter id should be final. | 43 |
| Parameter authors should be final. | 43 |
| Parameter title should be final. | 43 |
| Parameter year should be final. | 43 |
| Parameter pubName should be final. | 43 |
| 'pubName' hides a field. | 43 |
| Parameter firstPage should be final. | 43 |
| 'firstPage' hides a field. | 43 |
| Line is longer than 80 characters (found 108). | 44 |
| Parameter lastPage should be final. | 44 |
| 'lastPage' hides a field. | 44 |
| Parameter volume should be final. | 44 |
| 'volume' hides a field. | 44 |
| Parameter pubMedId should be final. | 44 |
| 'pubMedId' hides a field. | 44 |
| Parameter medlineId should be final. | 44 |
| 'medlineId' hides a field. | 44 |
| Parameter view should be final. | 44 |
| Expected @param tag for 'view'. | 44 |
| Parameter source should be final. | 45 |
| Expected @param tag for 'source'. | 45 |
| 'if' construct must use '{}'s. | 47 |
| Line is longer than 80 characters (found 105). | 47 |
| '||' should be on a new line. | 47 |
| Method 'toString' is not designed for extension - needs to be abstract, final or empty. | 63 |
| Line is longer than 80 characters (found 141). | 96 |
| Line is longer than 80 characters (found 135). | 103 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 119 |
| Parameter o should be final. | 119 |
| 'if' construct must use '{}'s. | 120 |
| 'if' construct must use '{}'s. | 121 |
| 'if' construct must use '{}'s. | 122 |
| 'if' construct must use '{}'s. | 126 |
| Line is longer than 80 characters (found 107). | 126 |
| Avoid inline conditionals. | 126 |
| 'if' construct must use '{}'s. | 127 |
| Line is longer than 80 characters (found 99). | 127 |
| Avoid inline conditionals. | 127 |
| 'if' construct must use '{}'s. | 128 |
| Line is longer than 80 characters (found 103). | 128 |
| Avoid inline conditionals. | 128 |
| 'if' construct must use '{}'s. | 129 |
| Line is longer than 80 characters (found 107). | 129 |
| Avoid inline conditionals. | 129 |
| 'if' construct must use '{}'s. | 130 |
| Line is longer than 80 characters (found 103). | 130 |
| Avoid inline conditionals. | 130 |
| 'if' construct must use '{}'s. | 131 |
| Line is longer than 80 characters (found 95). | 131 |
| Avoid inline conditionals. | 131 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 141 |
| '29' is a magic number. | 143 |
| Avoid inline conditionals. | 143 |
| '29' is a magic number. | 144 |
| Avoid inline conditionals. | 144 |
| '29' is a magic number. | 145 |
| Avoid inline conditionals. | 145 |
| '29' is a magic number. | 146 |
| Avoid inline conditionals. | 146 |
| '29' is a magic number. | 147 |
| Avoid inline conditionals. | 147 |
| '29' is a magic number. | 148 |
| Avoid inline conditionals. | 148 |
| Method 'getPubName' is not designed for extension - needs to be abstract, final or empty. | 155 |
| Missing a Javadoc comment. | 155 |
| Method 'getFirstPage' is not designed for extension - needs to be abstract, final or empty. | 159 |
| Missing a Javadoc comment. | 159 |
| Method 'getLastPage' is not designed for extension - needs to be abstract, final or empty. | 163 |
| Missing a Javadoc comment. | 163 |
| Method 'getVolume' is not designed for extension - needs to be abstract, final or empty. | 167 |
| Missing a Javadoc comment. | 167 |
| Method 'getPubMedId' is not designed for extension - needs to be abstract, final or empty. | 171 |
| Missing a Javadoc comment. | 171 |
| Method 'getMedlineId' is not designed for extension - needs to be abstract, final or empty. | 175 |
| Missing a Javadoc comment. | 175 |
| Comment matches to-do format 'TODO:'. | 179 |
| Method 'toXML' is not designed for extension - needs to be abstract, final or empty. | 180 |
| Missing a Javadoc comment. | 180 |
| Parameter number should be final. | 180 |
| Parameter intenzTextXML should be final. | 180 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 16 |
| Line is longer than 80 characters (found 113). | 27 |
| Parameter id should be final. | 27 |
| Parameter authors should be final. | 27 |
| Parameter title should be final. | 27 |
| Parameter year should be final. | 27 |
| Parameter patentNumber should be final. | 27 |
| 'patentNumber' hides a field. | 27 |
| Parameter view should be final. | 27 |
| Expected @param tag for 'view'. | 27 |
| Parameter source should be final. | 28 |
| Expected @param tag for 'source'. | 28 |
| 'if' construct must use '{}'s. | 30 |
| Line is longer than 80 characters (found 107). | 30 |
| Method 'toString' is not designed for extension - needs to be abstract, final or empty. | 39 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 63 |
| Parameter o should be final. | 63 |
| 'if' construct must use '{}'s. | 64 |
| 'if' construct must use '{}'s. | 65 |
| 'if' construct must use '{}'s. | 66 |
| 'if' construct must use '{}'s. | 70 |
| Line is longer than 80 characters (found 117). | 70 |
| Avoid inline conditionals. | 70 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 80 |
| '29' is a magic number. | 82 |
| Avoid inline conditionals. | 82 |
| Method 'getPatentNumber' is not designed for extension - needs to be abstract, final or empty. | 89 |
| Missing a Javadoc comment. | 89 |
| Comment matches to-do format 'TODO:'. | 93 |
| Method 'toXML' is not designed for extension - needs to be abstract, final or empty. | 94 |
| Missing a Javadoc comment. | 94 |
| Parameter number should be final. | 94 |
| Parameter intenzTextXML should be final. | 94 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 95). | 12 |
| Missing a Javadoc comment. | 18 |
| Variable 'pubId' must be private and have accessor methods. | 18 |
| Missing a Javadoc comment. | 20 |
| Variable 'authors' must be private and have accessor methods. | 20 |
| Missing a Javadoc comment. | 22 |
| Variable 'title' must be private and have accessor methods. | 22 |
| Missing a Javadoc comment. | 24 |
| Variable 'year' must be private and have accessor methods. | 24 |
| Missing a Javadoc comment. | 26 |
| Variable 'view' must be private and have accessor methods. | 26 |
| Missing a Javadoc comment. | 28 |
| Variable 'source' must be private and have accessor methods. | 28 |
| Line is longer than 80 characters (found 133). | 38 |
| Parameter id should be final. | 38 |
| Parameter authors should be final. | 38 |
| 'authors' hides a field. | 38 |
| Parameter title should be final. | 38 |
| 'title' hides a field. | 38 |
| Parameter year should be final. | 38 |
| 'year' hides a field. | 38 |
| Parameter enzymeViewConstant should be final. | 38 |
| Expected @param tag for 'enzymeViewConstant'. | 38 |
| Parameter source should be final. | 38 |
| 'source' hides a field. | 38 |
| Expected @param tag for 'source'. | 38 |
| 'if' construct must use '{}'s. | 40 |
| Line is longer than 80 characters (found 120). | 40 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 54 |
| Parameter o should be final. | 54 |
| 'if' construct must use '{}'s. | 55 |
| 'if' construct must use '{}'s. | 56 |
| 'if' construct must use '{}'s. | 60 |
| Line is longer than 80 characters (found 103). | 60 |
| Avoid inline conditionals. | 60 |
| 'if' construct must use '{}'s. | 61 |
| Avoid inline conditionals. | 61 |
| '!=' should be on a new line. | 61 |
| 'if' construct must use '{}'s. | 63 |
| Line is longer than 80 characters (found 95). | 63 |
| Avoid inline conditionals. | 63 |
| 'if' construct must use '{}'s. | 64 |
| Line is longer than 80 characters (found 99). | 64 |
| Avoid inline conditionals. | 64 |
| 'if' construct must use '{}'s. | 65 |
| Line is longer than 80 characters (found 95). | 65 |
| Avoid inline conditionals. | 65 |
| 'if' construct must use '{}'s. | 66 |
| Line is longer than 80 characters (found 91). | 66 |
| Avoid inline conditionals. | 66 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 76 |
| Avoid inline conditionals. | 78 |
| '29' is a magic number. | 79 |
| Avoid inline conditionals. | 79 |
| '29' is a magic number. | 80 |
| Avoid inline conditionals. | 80 |
| '29' is a magic number. | 81 |
| Avoid inline conditionals. | 81 |
| '29' is a magic number. | 82 |
| Avoid inline conditionals. | 82 |
| '29' is a magic number. | 83 |
| Avoid inline conditionals. | 83 |
| Method 'getPubId' is not designed for extension - needs to be abstract, final or empty. | 89 |
| Missing a Javadoc comment. | 89 |
| Method 'getAuthors' is not designed for extension - needs to be abstract, final or empty. | 93 |
| Missing a Javadoc comment. | 93 |
| Method 'getTitle' is not designed for extension - needs to be abstract, final or empty. | 97 |
| Missing a Javadoc comment. | 97 |
| Method 'getYear' is not designed for extension - needs to be abstract, final or empty. | 101 |
| Missing a Javadoc comment. | 101 |
| Method 'getView' is not designed for extension - needs to be abstract, final or empty. | 105 |
| Missing a Javadoc comment. | 105 |
| Method 'getSource' is not designed for extension - needs to be abstract, final or empty. | 109 |
| Missing a Javadoc comment. | 109 |
| Comment matches to-do format 'TODO:'. | 113 |
| Method 'toXML' is not designed for extension - needs to be abstract, final or empty. | 114 |
| Missing a Javadoc comment. | 114 |
| Parameter number should be final. | 114 |
| Parameter intenzTextXML should be final. | 114 |
| Line is longer than 80 characters (found 95). | 125 |
| Line is longer than 80 characters (found 107). | 127 |
| Line is longer than 80 characters (found 93). | 133 |
| Line is longer than 80 characters (found 105). | 135 |
| Missing a Javadoc comment. | 158 |
| Parameter name should be final. | 158 |
| Missing a Javadoc comment. | 168 |
| Parameter text should be final. | 168 |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| Missing a Javadoc comment. | 10 |
| Missing a Javadoc comment. | 11 |
| Missing a Javadoc comment. | 12 |
| Missing a Javadoc comment. | 13 |
| Missing a Javadoc comment. | 14 |
| Missing a Javadoc comment. | 15 |
| Missing a Javadoc comment. | 16 |
| Missing a Javadoc comment. | 17 |
| Missing a Javadoc comment. | 18 |
| Missing a Javadoc comment. | 19 |
| Missing a Javadoc comment. | 21 |
| Method 'getAllEnzymes' is not designed for extension - needs to be abstract, final or empty. | 34 |
| Missing a Javadoc comment. | 34 |
| Method 'setAllEnzymes' is not designed for extension - needs to be abstract, final or empty. | 38 |
| Missing a Javadoc comment. | 38 |
| Parameter allEnzymes should be final. | 38 |
| 'allEnzymes' hides a field. | 38 |
| Method 'getApprovedEnzymes' is not designed for extension - needs to be abstract, final or empty. | 42 |
| Missing a Javadoc comment. | 42 |
| Method 'setApprovedEnzymes' is not designed for extension - needs to be abstract, final or empty. | 46 |
| Missing a Javadoc comment. | 46 |
| Parameter approvedEnzymes should be final. | 46 |
| 'approvedEnzymes' hides a field. | 46 |
| Method 'getProposedEnzymes' is not designed for extension - needs to be abstract, final or empty. | 50 |
| Missing a Javadoc comment. | 50 |
| Method 'setProposedEnzymes' is not designed for extension - needs to be abstract, final or empty. | 54 |
| Missing a Javadoc comment. | 54 |
| Parameter proposedEnzymes should be final. | 54 |
| 'proposedEnzymes' hides a field. | 54 |
| Method 'getSuggestedEnzymes' is not designed for extension - needs to be abstract, final or empty. | 58 |
| Missing a Javadoc comment. | 58 |
| Method 'setSuggestedEnzymes' is not designed for extension - needs to be abstract, final or empty. | 62 |
| Missing a Javadoc comment. | 62 |
| Parameter suggestedEnzymes should be final. | 62 |
| 'suggestedEnzymes' hides a field. | 62 |
| Method 'getApprovedDeletedEnzymes' is not designed for extension - needs to be abstract, final or empty. | 66 |
| Missing a Javadoc comment. | 66 |
| Method 'setApprovedDeletedEnzymes' is not designed for extension - needs to be abstract, final or empty. | 70 |
| Missing a Javadoc comment. | 70 |
| Parameter approvedDeletedEnzymes should be final. | 70 |
| 'approvedDeletedEnzymes' hides a field. | 70 |
| Method 'getProposedDeletedEnzymes' is not designed for extension - needs to be abstract, final or empty. | 74 |
| Missing a Javadoc comment. | 74 |
| Method 'setProposedDeletedEnzymes' is not designed for extension - needs to be abstract, final or empty. | 78 |
| Missing a Javadoc comment. | 78 |
| Parameter proposedDeletedEnzymes should be final. | 78 |
| 'proposedDeletedEnzymes' hides a field. | 78 |
| Method 'getSuggestedDeletedEnzymes' is not designed for extension - needs to be abstract, final or empty. | 82 |
| Missing a Javadoc comment. | 82 |
| Method 'setSuggestedDeletedEnzymes' is not designed for extension - needs to be abstract, final or empty. | 86 |
| Missing a Javadoc comment. | 86 |
| Parameter suggestedDeletedEnzymes should be final. | 86 |
| 'suggestedDeletedEnzymes' hides a field. | 86 |
| Method 'getClasses' is not designed for extension - needs to be abstract, final or empty. | 90 |
| Missing a Javadoc comment. | 90 |
| Method 'setClasses' is not designed for extension - needs to be abstract, final or empty. | 94 |
| Missing a Javadoc comment. | 94 |
| Parameter classes should be final. | 94 |
| 'classes' hides a field. | 94 |
| Method 'getSubclasses' is not designed for extension - needs to be abstract, final or empty. | 98 |
| Missing a Javadoc comment. | 98 |
| Method 'setSubclasses' is not designed for extension - needs to be abstract, final or empty. | 102 |
| Missing a Javadoc comment. | 102 |
| Parameter subclasses should be final. | 102 |
| 'subclasses' hides a field. | 102 |
| Method 'getSubsubclasses' is not designed for extension - needs to be abstract, final or empty. | 106 |
| Missing a Javadoc comment. | 106 |
| Method 'setSubsubclasses' is not designed for extension - needs to be abstract, final or empty. | 110 |
| Missing a Javadoc comment. | 110 |
| Parameter subsubclasses should be final. | 110 |
| 'subsubclasses' hides a field. | 110 |
