uk.ac.ebi.intenz.domain.enzyme

Class Cofactor

java.lang.Object

uk.ac.ebi.intenz.domain.enzyme.Cofactor

All Implemented Interfaces:

Viewable

public class Cofactor
extends Object
implements Viewable

Cofactors are compounds participating in the reaction and are represented by this class.

At the moment this class stores the cofactor string from ENZYME only. In future this string should be broken down into its components, i.e. compounds and the binary operators (AND/OR) between them.

Instances of this class are immutable.

Version:

$Revision: 1.2 $ $Date: 2008/01/28 12:33:00 $

Author:

Michael Darsow

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	Cofactor.Operators

Constructor Summary

Constructors

Constructor and Description
Cofactor(String cofactorValue, EnzymeSourceConstant source, EnzymeViewConstant view) Deprecated. use the valueOf method instead to call the private constructor

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object o) Standard equals method.
String	getCofactorValue() Deprecated. use getCompound().getName() or toString() instead
uk.ac.ebi.rhea.domain.Compound	getCompound()
EnzymeSourceConstant	getSource()
EnzymeViewConstant	getView()
int	hashCode() Returns the hash code of this object.
String	toString()
static Cofactor	valueOf(uk.ac.ebi.rhea.domain.Compound compound, EnzymeSourceConstant source, EnzymeViewConstant view) Builds a cofactor from the passed parameters.

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

Cofactor

public Cofactor(String cofactorValue,
        EnzymeSourceConstant source,
        EnzymeViewConstant view)

Deprecated. use the valueOf method instead to call the private constructor

Returns a Cofactor instance defined by cofactorValue.

Parameters:

cofactorValue - The string representation of the cofactor(s).

Throws:

NullPointerException - if cofactorValue is null.

IllegalArgumentException - if cofactorValue is empty.

Method Detail

valueOf

public static Cofactor valueOf(uk.ac.ebi.rhea.domain.Compound compound,
               EnzymeSourceConstant source,
               EnzymeViewConstant view)

Builds a cofactor from the passed parameters.

Parameters:

compound -

source -

view -

Returns:

a new cofactor object

equals

public boolean equals(Object o)

Standard equals method.

Overrides:

equals in class Object

Parameters:

o - Object to be compared to this one.

Returns:

true if the objects are equal.

hashCode

public int hashCode()

Returns the hash code of this object.

Overrides:

hashCode in class Object

Returns:

the hash code of this object.

getCofactorValue

public String getCofactorValue()

Deprecated. use getCompound().getName() or toString() instead

Returns the cofactor string.

Returns:

the cofactor string.

getSource

public EnzymeSourceConstant getSource()

getView

public EnzymeViewConstant getView()

Specified by:

getView in interface Viewable

getCompound

public uk.ac.ebi.rhea.domain.Compound getCompound()

toString

public String toString()

Overrides:

toString in class Object