Deprecated API

Contents

• Deprecated Classes
• Deprecated Fields
• Deprecated Methods
• Deprecated Constructors

Deprecated Classes

Class and Description
uk.ac.ebi.intenz.domain.enzyme.DataComment use a plain String.
uk.ac.ebi.intenz.domain.constants.EnzymeStatusConstant use enumeration Status instead.
uk.ac.ebi.intenz.domain.constants.EnzymeViewConstant use enumeration View instead.
uk.ac.ebi.intenz.domain.constants.EventConstant use enumeration Event instead.

Deprecated Fields

Field and Description
uk.ac.ebi.intenz.domain.constants.XrefDatabaseConstant.ERGO This website does not work any more (if it ever did).
uk.ac.ebi.intenz.domain.enzyme.EnzymeLink.ERGO the ERGO website is not working any more.

Deprecated Methods

Method and Description
uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry.addCofactor(Cofactor) use EnzymeEntry.addCofactor(Object) instead
uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry.addReaction(Reaction) use addEnzymaticReaction instead
uk.ac.ebi.intenz.domain.enzyme.Cofactor.getCofactorValue() use Cofactor.getCompound().getName() or Cofactor.toString() instead
uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry.getComments(EnzymeViewConstant) use EnzymeEntry.getComments(String) instead
uk.ac.ebi.intenz.domain.enzyme.DataComment.getId()
uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry.getLinks(EnzymeViewConstant) use EnzymeEntry.getLinks(String) instead
uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry.getReactions() use getEnzymaticReactions instead
uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry.getReactions(EnzymeViewConstant) use EnzymeEntry.getReactions(View) or EnzymeEntry.getReactions(String) instead.
uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry.getSynonyms(EnzymeViewConstant) use EnzymeEntry.getSynonyms(String) or EnzymeEntry.getSynonyms(View) instead.
uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry.removeCofactor(Cofactor) use EnzymeEntry.removeCofactor(Object) instead
uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry.removeCofactor(String) use removeCofactor(Object) instead
uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry.removeReaction(String) use removeEnzymaticReaction instead
uk.ac.ebi.intenz.domain.enzyme.DataComment.setId(long)
uk.ac.ebi.intenz.domain.constants.EnzymeNameQualifierConstant.toASCII(EnzymeNameQualifierConstant)
uk.ac.ebi.intenz.domain.constants.EnzymeViewConstant.toDisplayImage() MVC sin
uk.ac.ebi.intenz.domain.constants.EnzymeViewConstant.toDisplayImage(String) MVC sin
uk.ac.ebi.intenz.domain.constants.EnzymeViewConstant.toDisplayString()
uk.ac.ebi.intenz.domain.constants.EnzymeSourceConstant.toDisplayString()
uk.ac.ebi.intenz.domain.constants.EnzymeViewConstant.toDisplayString(String)
uk.ac.ebi.intenz.domain.constants.EnzymeSourceConstant.toDisplayString(String)
uk.ac.ebi.intenz.domain.constants.EnzymeNameQualifierConstant.toEditableHTML() MVC sin
uk.ac.ebi.intenz.domain.constants.EnzymeNameQualifierConstant.toHTML(String) MVC sin
uk.ac.ebi.intenz.domain.enzyme.DataComment.valueOf(String, String)

Deprecated Constructors

Constructor and Description
uk.ac.ebi.intenz.domain.enzyme.Cofactor(String, EnzymeSourceConstant, EnzymeViewConstant) use the valueOf method instead to call the private constructor
uk.ac.ebi.intenz.domain.enzyme.DataComment(Long, String)