Uses of Class
uk.ac.ebi.intenz.domain.constants.XrefDatabaseConstant

Packages that use XrefDatabaseConstant

Package	Description
uk.ac.ebi.intenz.domain.constants	The most commonly used constants are implemented as typesafe enums.
uk.ac.ebi.intenz.domain.enzyme	The core enzyme information is held in these classes.

Uses of XrefDatabaseConstant in uk.ac.ebi.intenz.domain.constants

Fields in uk.ac.ebi.intenz.domain.constants declared as XrefDatabaseConstant

Modifier and Type	Field and Description
static XrefDatabaseConstant	XrefDatabaseConstant.BRENDA BRENDA collects functional data about enzymes.
static XrefDatabaseConstant	XrefDatabaseConstant.CAS CAS is commercial and cannot be linked to.
static XrefDatabaseConstant	XrefDatabaseConstant.CSA Catalytic Site Atlas provides catalytic residues details.
static XrefDatabaseConstant	XrefDatabaseConstant.DIAGRAM
static XrefDatabaseConstant	XrefDatabaseConstant.ENZYME ENZYME is the EXPASY version of the NC-IUBMB Nomenclature containing some additional information (cofactors, improved comments and additional links).
static XrefDatabaseConstant	XrefDatabaseConstant.ERGO Deprecated. This website does not work any more (if it ever did).
static XrefDatabaseConstant	XrefDatabaseConstant.EXPLORENZ Link to ExplorEnz (Dublin's MySQL implementation of NC-IUBMB).
static XrefDatabaseConstant	XrefDatabaseConstant.GO GO is the Gene Ontology database.
static XrefDatabaseConstant	XrefDatabaseConstant.KEGG KEGG comprises several databases storing information especially related to enzymes (e.g.
static XrefDatabaseConstant	XrefDatabaseConstant.MEROPS MEROPS is a resource for peptidases.
static XrefDatabaseConstant	XrefDatabaseConstant.METACYC
static XrefDatabaseConstant	XrefDatabaseConstant.MIM OMIM stores information about human genetic diseases.
static XrefDatabaseConstant	XrefDatabaseConstant.NC_IUBMB Gerry Moss' web pages (Nomenclature Comitee of the IUBMB).
static XrefDatabaseConstant	XrefDatabaseConstant.NIST74 NIST74 provides further information about the catalytic activity.
static XrefDatabaseConstant	XrefDatabaseConstant.PDB Link to the Protein Data Bank (PDB).
static XrefDatabaseConstant	XrefDatabaseConstant.PROSITE PROSITE is located at the SIB and contains information about protein families and domains.
static XrefDatabaseConstant	XrefDatabaseConstant.SWISSPROT Swiss-Prot is THE protein sequence database.
static XrefDatabaseConstant	XrefDatabaseConstant.UMBBD UM-BBD is a comprehensive resource about enzymes also containing enzymes which haven't got an EC number yet.
static XrefDatabaseConstant	XrefDatabaseConstant.UNDEF
static XrefDatabaseConstant	XrefDatabaseConstant.UNIPATHWAY
static XrefDatabaseConstant	XrefDatabaseConstant.WIT ERGO formerly WIT.

Fields in uk.ac.ebi.intenz.domain.constants with type parameters of type XrefDatabaseConstant

Modifier and Type	Field and Description
static List<XrefDatabaseConstant>	XrefDatabaseConstant.LINK_SOURCE_CONSTANTS All link sources ordered alphabetically.
static Set<XrefDatabaseConstant>	XrefDatabaseConstant.UNIQUE_LINK_SOURCES This set contains all link which can only occur once in an enzyme entry.

Methods in uk.ac.ebi.intenz.domain.constants that return XrefDatabaseConstant

Modifier and Type	Method and Description
static XrefDatabaseConstant	XrefDatabaseConstant.valueOf(String sourceCode)

Methods in uk.ac.ebi.intenz.domain.constants with parameters of type XrefDatabaseConstant

Modifier and Type	Method and Description
int	XrefDatabaseConstant.compareTo(XrefDatabaseConstant linkSourceConstant)

Uses of XrefDatabaseConstant in uk.ac.ebi.intenz.domain.enzyme

Methods in uk.ac.ebi.intenz.domain.enzyme that return XrefDatabaseConstant

Modifier and Type	Method and Description
XrefDatabaseConstant	EnzymeLink.getXrefDatabaseConstant()

Methods in uk.ac.ebi.intenz.domain.enzyme with parameters of type XrefDatabaseConstant

Modifier and Type	Method and Description
static EnzymeLink	EnzymeLink.getStaticLink(XrefDatabaseConstant databaseConstant)
static boolean	EnzymeLink.isStaticLink(XrefDatabaseConstant databaseConstant) Checks if the given link is a static link.
static EnzymeLink	EnzymeLink.valueOf(XrefDatabaseConstant xrefDatabaseConstant, String specificUrl, String accession, String name, EnzymeSourceConstant source, EnzymeViewConstant view) Returns an EnzymeLink instance.
static EnzymeLink	EnzymeLink.valueOf(XrefDatabaseConstant xrefDatabaseConstant, String specificUrl, String accession, String name, EnzymeSourceConstant source, EnzymeViewConstant view, String dataComment) Returns a commented EnzymeLink instance.