The following document contains the results of Checkstyle. 
| Rules | Violations | Severity |
|---|---|---|
JavadocPackage
| 2 |  Error |
| NewlineAtEndOfFile | 1 | Error |
| Translation | 0 | Error |
| FileLength | 0 | Error |
FileTabCharacter
| 1261 | Error |
RegexpSingleline
| 29 | Error |
| JavadocMethod | 142 | Error |
| JavadocType | 4 | Error |
| JavadocVariable | 42 | Error |
| JavadocStyle | 4 | Error |
| ConstantName | 0 | Error |
| LocalFinalVariableName | 0 | Error |
| LocalVariableName | 4 | Error |
| MemberName | 3 | Error |
| MethodName | 0 | Error |
| PackageName | 0 | Error |
| ParameterName | 0 | Error |
| StaticVariableName | 0 | Error |
| TypeName | 0 | Error |
| AvoidStarImport | 7 | Error |
| IllegalImport | 0 | Error |
| RedundantImport | 0 | Error |
| UnusedImports | 1 | Error |
| LineLength | 551 | Error |
| MethodLength | 1 | Error |
| ParameterNumber | 0 | Error |
| EmptyForIteratorPad | 0 | Error |
| MethodParamPad | 1 | Error |
| NoWhitespaceAfter | 22 | Error |
| NoWhitespaceBefore | 0 | Error |
| OperatorWrap | 48 | Error |
| ParenPad | 0 | Error |
| TypecastParenPad | 0 | Error |
| WhitespaceAfter | 22 | Error |
| WhitespaceAround | 141 | Error |
| ModifierOrder | 1 | Error |
| RedundantModifier | 0 | Error |
| AvoidNestedBlocks | 0 | Error |
| EmptyBlock | 0 | Error |
| LeftCurly | 0 | Error |
| NeedBraces | 120 | Error |
| RightCurly | 1 | Error |
| AvoidInlineConditionals | 15 | Error |
| EmptyStatement | 0 | Error |
| EqualsHashCode | 0 | Error |
| HiddenField | 14 | Error |
| IllegalInstantiation | 0 | Error |
| InnerAssignment | 0 | Error |
| MagicNumber | 19 | Error |
| MissingSwitchDefault | 2 | Error |
| RedundantThrows | 0 | Error |
| SimplifyBooleanExpression | 0 | Error |
| SimplifyBooleanReturn | 0 | Error |
| DesignForExtension | 40 | Error |
| FinalClass | 7 | Error |
| HideUtilityClassConstructor | 2 | Error |
| InterfaceIsType | 0 | Error |
| VisibilityModifier | 11 | Error |
| ArrayTypeStyle | 0 | Error |
| FinalParameters | 206 | Error |
| TodoComment | 4 | Error |
| UpperEll | 0 | Error |
| Violation | Message | Line |
|---|---|---|
| File does not end with a newline. | 0 |
| Line contains a tab character. | 3 |
| Line contains a tab character. | 6 |
| Line contains a tab character. | 9 |
| Line contains a tab character. | 16 |
| Line contains a tab character. | 19 |
| Violation | Message | Line |
|---|---|---|
| Utility classes should not have a public or default constructor. | 12 |
| Line is longer than 80 characters (found 93). | 15 |
| Line contains a tab character. | 21 |
| Line is longer than 80 characters (found 83). | 23 |
| Parameter ecString should be final. | 23 |
| Parameter uppercaseFirstLetter should be final. | 23 |
| '{' is not preceded with whitespace. | 23 |
| Line contains a tab character. | 24 |
| Line contains a tab character. | 25 |
| '?' is not preceded with whitespace. | 25 |
| Avoid inline conditionals. | 25 |
| Line has trailing spaces. | 27 |
| Missing a Javadoc comment. | 28 |
| Parameter ecString should be final. | 28 |
| '{' is not preceded with whitespace. | 28 |
| Line contains a tab character. | 29 |
| Line is longer than 80 characters (found 100). | 30 |
| Line contains a tab character. | 30 |
| Line contains a tab character. | 31 |
| Line contains a tab character. | 32 |
| Line is longer than 80 characters (found 84). | 33 |
| Line contains a tab character. | 33 |
| '?' is not preceded with whitespace. | 33 |
| Avoid inline conditionals. | 33 |
| Line is longer than 80 characters (found 88). | 34 |
| Line contains a tab character. | 34 |
| Line contains a tab character. | 35 |
| Line contains a tab character. | 36 |
| Line contains a tab character. | 37 |
| Line is longer than 80 characters (found 92). | 38 |
| Line contains a tab character. | 38 |
| '?' is not preceded with whitespace. | 38 |
| Avoid inline conditionals. | 38 |
| Expected an @return tag. | 47 |
| Parameter s should be final. | 47 |
| Expected @param tag for 's'. | 47 |
| '{' is not preceded with whitespace. | 47 |
| Line contains a tab character. | 48 |
| Line contains a tab character. | 49 |
| Line contains a tab character. | 50 |
| Line contains a tab character. | 51 |
| '{' is not preceded with whitespace. | 51 |
| Line contains a tab character. | 52 |
| Line contains a tab character. | 53 |
| 'if' construct must use '{}'s. | 54 |
| Line contains a tab character. | 54 |
| Line contains a tab character. | 55 |
| '4' is a magic number. | 55 |
| Line is longer than 80 characters (found 149). | 57 |
| Line contains a tab character. | 57 |
| Line contains a tab character. | 58 |
| Line contains a tab character. | 59 |
| 'if' construct must use '{}'s. | 60 |
| Line contains a tab character. | 60 |
| Line contains a tab character. | 61 |
| 'if' construct must use '{}'s. | 62 |
| Line contains a tab character. | 62 |
| Line contains a tab character. | 63 |
| 'if' construct must use '{}'s. | 64 |
| Line contains a tab character. | 64 |
| '3' is a magic number. | 64 |
| Line contains a tab character. | 65 |
| Line contains a tab character. | 67 |
| Line contains a tab character. | 68 |
| Line contains a tab character. | 69 |
| Line contains a tab character. | 70 |
| Line is longer than 80 characters (found 85). | 76 |
| Expected an @return tag. | 81 |
| Parameter s should be final. | 81 |
| Expected @param tag for 's'. | 81 |
| '{' is not preceded with whitespace. | 81 |
| 'if' construct must use '{}'s. | 82 |
| Line is longer than 80 characters (found 92). | 82 |
| Line contains a tab character. | 82 |
| Line contains a tab character. | 83 |
| Line is longer than 80 characters (found 102). | 84 |
| Line contains a tab character. | 84 |
| Line contains a tab character. | 85 |
| Line contains a tab character. | 86 |
| '{' is not preceded with whitespace. | 86 |
| Line contains a tab character. | 87 |
| Line is longer than 80 characters (found 81). | 88 |
| Line contains a tab character. | 88 |
| '+' should be on a new line. | 88 |
| Line is longer than 80 characters (found 93). | 89 |
| Line contains a tab character. | 89 |
| Line contains a tab character. | 90 |
| Line contains a tab character. | 91 |
| Line contains a tab character. | 92 |
| Line contains a tab character. | 93 |
| Line contains a tab character. | 94 |
| Line is longer than 80 characters (found 96). | 95 |
| Line contains a tab character. | 95 |
| '+' should be on a new line. | 95 |
| Line contains a tab character. | 96 |
| Line contains a tab character. | 97 |
| Line contains a tab character. | 98 |
| '{' is not preceded with whitespace. | 98 |
| Line is longer than 80 characters (found 89). | 99 |
| Line contains a tab character. | 99 |
| '+' should be on a new line. | 99 |
| Line is longer than 80 characters (found 93). | 100 |
| Line contains a tab character. | 100 |
| Line is longer than 80 characters (found 81). | 101 |
| Line contains a tab character. | 101 |
| Line is longer than 80 characters (found 81). | 102 |
| Line contains a tab character. | 102 |
| Line is longer than 80 characters (found 95). | 103 |
| Line contains a tab character. | 103 |
| Line contains a tab character. | 104 |
| Line contains a tab character. | 105 |
| Line contains a tab character. | 106 |
| Line contains a tab character. | 107 |
| Line contains a tab character. | 108 |
| Line is longer than 80 characters (found 97). | 109 |
| Line contains a tab character. | 109 |
| '+' should be on a new line. | 109 |
| Line is longer than 80 characters (found 102). | 110 |
| Line contains a tab character. | 110 |
| Line contains a tab character. | 111 |
| Line contains a tab character. | 112 |
| '{' is not preceded with whitespace. | 112 |
| Line is longer than 80 characters (found 89). | 113 |
| Line contains a tab character. | 113 |
| '+' should be on a new line. | 113 |
| Line is longer than 80 characters (found 95). | 114 |
| Line contains a tab character. | 114 |
| '+' should be on a new line. | 114 |
| Line contains a tab character. | 115 |
| '+' should be on a new line. | 115 |
| Line is longer than 80 characters (found 81). | 116 |
| Line contains a tab character. | 116 |
| '+' should be on a new line. | 116 |
| Line is longer than 80 characters (found 95). | 117 |
| Line contains a tab character. | 117 |
| '+' should be on a new line. | 117 |
| Line is longer than 80 characters (found 81). | 118 |
| Line contains a tab character. | 118 |
| '+' should be on a new line. | 118 |
| Line is longer than 80 characters (found 81). | 119 |
| Line contains a tab character. | 119 |
| '+' should be on a new line. | 119 |
| Line is longer than 80 characters (found 95). | 120 |
| Line contains a tab character. | 120 |
| '+' should be on a new line. | 120 |
| Line contains a tab character. | 121 |
| '3' is a magic number. | 121 |
| '3' is a magic number. | 121 |
| Line contains a tab character. | 122 |
| Line contains a tab character. | 123 |
| Line contains a tab character. | 124 |
| Line is longer than 80 characters (found 101). | 128 |
| Line is longer than 80 characters (found 92). | 132 |
| Line is longer than 80 characters (found 93). | 134 |
| Parameter string2check should be final. | 134 |
| Expected @param tag for 'string2check'. | 134 |
| Parameter uppercaseFirstLetter should be final. | 134 |
| '{' is not preceded with whitespace. | 134 |
| Line is longer than 80 characters (found 81). | 135 |
| Line contains a tab character. | 135 |
| Line is longer than 80 characters (found 125). | 136 |
| Line contains a tab character. | 136 |
| Line contains a tab character. | 137 |
| Line contains a tab character. | 138 |
| Line contains a tab character. | 139 |
| Line contains a tab character. | 140 |
| Line has trailing spaces. | 142 |
| Missing a Javadoc comment. | 143 |
| Parameter s should be final. | 143 |
| '{' is not preceded with whitespace. | 143 |
| Line is longer than 80 characters (found 114). | 144 |
| Line contains a tab character. | 144 |
| Line contains a tab character. | 145 |
| Line contains a tab character. | 146 |
| Line contains a tab character. | 147 |
| Line contains a tab character. | 148 |
| Parameter text should be final. | 158 |
| Line has trailing spaces. | 164 |
| Unused @throws tag for 'NullPointerException'. | 170 |
| Parameter flatFile should be final. | 172 |
| 'if' construct must use '{}'s. | 173 |
| Line is longer than 80 characters (found 81). | 174 |
| Line contains a tab character. | 174 |
| Line is longer than 80 characters (found 117). | 176 |
| Line contains a tab character. | 176 |
| Line is longer than 80 characters (found 135). | 178 |
| Line contains a tab character. | 178 |
| Name 'DRLinePattern' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 179 |
| Name 'DRLinePatternMatcher' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 180 |
| Name 'DRLineContents' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 183 |
| Line is longer than 80 characters (found 150). | 185 |
| Line is longer than 80 characters (found 97). | 186 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 95). | 19 |
| Method 'process' is not designed for extension - needs to be abstract, final or empty. | 25 |
| Expected @throws tag for 'ServletException'. | 25 |
| Expected @throws tag for 'IOException'. | 25 |
| Comment matches to-do format 'TODO:'. | 30 |
| Line contains a tab character. | 30 |
| Line contains a tab character. | 31 |
| Line is longer than 80 characters (found 83). | 37 |
| 'if' construct must use '{}'s. | 38 |
| 'else' construct must use '{}'s. | 40 |
| Line is longer than 80 characters (found 84). | 64 |
| Missing a Javadoc comment. | 69 |
| Parameter result should be final. | 69 |
| Parameter start should be final. | 69 |
| Parameter end should be final. | 69 |
| Violation | Message | Line |
|---|---|---|
| Unused import - uk.ac.ebi.xchars.SpecialCharacters. | 7 |
| Line is longer than 80 characters (found 87). | 10 |
| Line is longer than 80 characters (found 100). | 19 |
| Line is longer than 80 characters (found 96). | 20 |
| Line is longer than 80 characters (found 100). | 22 |
| Comment matches to-do format 'TODO:'. | 23 |
| Line is longer than 80 characters (found 86). | 23 |
| Method 'process' is not designed for extension - needs to be abstract, final or empty. | 28 |
| Expected @throws tag for 'ServletException'. | 28 |
| Expected @throws tag for 'IOException'. | 28 |
| Line is longer than 80 characters (found 118). | 31 |
| Line is longer than 80 characters (found 90). | 33 |
| Parameter unicodeOnly should be final. | 53 |
| Line is longer than 80 characters (found 93). | 56 |
| Line is longer than 80 characters (found 93). | 57 |
| Line is longer than 80 characters (found 115). | 61 |
| '+' should be on a new line. | 61 |
| Line is longer than 80 characters (found 123). | 62 |
| '+' should be on a new line. | 62 |
| Line is longer than 80 characters (found 123). | 63 |
| Line is longer than 80 characters (found 115). | 65 |
| '+' should be on a new line. | 65 |
| Line is longer than 80 characters (found 85). | 66 |
| Line is longer than 80 characters (found 122). | 68 |
| '+' should be on a new line. | 68 |
| Line is longer than 80 characters (found 126). | 69 |
| '+' should be on a new line. | 69 |
| '+' should be on a new line. | 70 |
| Line is longer than 80 characters (found 126). | 71 |
| '+' should be on a new line. | 71 |
| Line is longer than 80 characters (found 126). | 72 |
| '+' should be on a new line. | 72 |
| Line is longer than 80 characters (found 118). | 73 |
| Line is longer than 80 characters (found 118). | 75 |
| '+' should be on a new line. | 75 |
| Line is longer than 80 characters (found 86). | 76 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 16 |
| Variable 'config' must be private and have accessor methods. | 16 |
| Method 'setConfig' is not designed for extension - needs to be abstract, final or empty. | 18 |
| Missing a Javadoc comment. | 18 |
| Parameter config should be final. | 18 |
| 'config' hides a field. | 18 |
| Line is longer than 80 characters (found 88). | 23 |
| 'public' modifier out of order with the JLS suggestions. | 28 |
| Expected @throws tag for 'ServletException'. | 28 |
| Expected @throws tag for 'IOException'. | 28 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 24 |
| Name 'LOGGER' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 24 |
| Variable 'LOGGER' must be private and have accessor methods. | 24 |
| Line is longer than 80 characters (found 121). | 26 |
| Missing a Javadoc comment. | 26 |
| Variable 'databaseErrorMessage' must be private and have accessor methods. | 26 |
| '+' should be on a new line. | 26 |
| '+' should be on a new line. | 27 |
| '+' should be on a new line. | 28 |
| Missing a Javadoc comment. | 31 |
| Variable 'context' must be private and have accessor methods. | 31 |
| Missing a Javadoc comment. | 33 |
| Variable 'request' must be private and have accessor methods. | 33 |
| Missing a Javadoc comment. | 35 |
| Variable 'response' must be private and have accessor methods. | 35 |
| Missing a Javadoc comment. | 37 |
| Variable 'con' must be private and have accessor methods. | 37 |
| Line contains a tab character. | 39 |
| Missing a Javadoc comment. | 39 |
| Variable 'enzymeEntryMapper' must be private and have accessor methods. | 39 |
| Line contains a tab character. | 40 |
| Line is longer than 80 characters (found 100). | 43 |
| Line is longer than 80 characters (found 118). | 50 |
| Method 'init' is not designed for extension - needs to be abstract, final or empty. | 50 |
| Parameter context should be final. | 50 |
| 'context' hides a field. | 50 |
| Parameter request should be final. | 50 |
| 'request' hides a field. | 50 |
| Parameter response should be final. | 50 |
| 'response' hides a field. | 50 |
| Parameter con should be final. | 50 |
| 'con' hides a field. | 50 |
| Method 'forward' is not designed for extension - needs to be abstract, final or empty. | 64 |
| Parameter target should be final. | 64 |
| Expected @throws tag for 'ServletException'. | 64 |
| Expected @throws tag for 'IOException'. | 64 |
| Line is longer than 80 characters (found 86). | 71 |
| Line has trailing spaces. | 72 |
| Method 'closeConnection' is not designed for extension - needs to be abstract, final or empty. | 76 |
| Expected @throws tag for 'ServletException'. | 76 |
| Expected @throws tag for 'IOException'. | 76 |
| '{' is not preceded with whitespace. | 79 |
| Line is longer than 80 characters (found 98). | 87 |
| '+' should be on a new line. | 87 |
| Line has trailing spaces. | 93 |
| Line contains a tab character. | 94 |
| Method 'close' is not designed for extension - needs to be abstract, final or empty. | 94 |
| Missing a Javadoc comment. | 94 |
| Line contains a tab character. | 95 |
| Line contains a tab character. | 96 |
| Line contains a tab character. | 98 |
| Method 'finalize' is not designed for extension - needs to be abstract, final or empty. | 98 |
| Line contains a tab character. | 99 |
| Line contains a tab character. | 100 |
| Line contains a tab character. | 101 |
| Violation | Message | Line |
|---|---|---|
| Using the '.*' form of import should be avoided - javax.mail.*. | 4 |
| Missing a Javadoc comment. | 18 |
| Line is longer than 80 characters (found 89). | 20 |
| Line contains a tab character. | 20 |
| Missing a Javadoc comment. | 20 |
| Line has trailing spaces. | 21 |
| Line contains a tab character. | 21 |
| Line contains a tab character. | 22 |
| Method 'init' is not designed for extension - needs to be abstract, final or empty. | 22 |
| Missing a Javadoc comment. | 22 |
| Line contains a tab character. | 23 |
| Line contains a tab character. | 24 |
| Line is longer than 80 characters (found 83). | 26 |
| Line contains a tab character. | 26 |
| Method 'doGet' is not designed for extension - needs to be abstract, final or empty. | 26 |
| Missing a Javadoc comment. | 26 |
| Parameter request should be final. | 26 |
| Parameter response should be final. | 26 |
| Line contains a tab character. | 27 |
| Line is longer than 80 characters (found 100). | 28 |
| Line contains a tab character. | 28 |
| Line contains a tab character. | 29 |
| Line is longer than 80 characters (found 84). | 31 |
| Line contains a tab character. | 31 |
| Method 'doPost' is not designed for extension - needs to be abstract, final or empty. | 31 |
| Missing a Javadoc comment. | 31 |
| Parameter request should be final. | 31 |
| Parameter response should be final. | 31 |
| Line contains a tab character. | 32 |
| Line contains a tab character. | 34 |
| '{' is not preceded with whitespace. | 34 |
| Line is longer than 80 characters (found 108). | 35 |
| Line contains a tab character. | 35 |
| Line contains a tab character. | 36 |
| Line contains a tab character. | 38 |
| Line contains a tab character. | 39 |
| Line contains a tab character. | 40 |
| Line has trailing spaces. | 41 |
| Line contains a tab character. | 41 |
| Line contains a tab character. | 42 |
| '{' is not preceded with whitespace. | 42 |
| Line is longer than 80 characters (found 97). | 43 |
| Line contains a tab character. | 43 |
| Line contains a tab character. | 44 |
| Line contains a tab character. | 45 |
| Line contains a tab character. | 46 |
| '{' is not preceded with whitespace. | 46 |
| Line is longer than 80 characters (found 95). | 47 |
| Line contains a tab character. | 47 |
| Line contains a tab character. | 48 |
| Line contains a tab character. | 49 |
| Line contains a tab character. | 50 |
| Line has trailing spaces. | 51 |
| Line contains a tab character. | 51 |
| Line contains a tab character. | 52 |
| Line is longer than 80 characters (found 87). | 53 |
| Line contains a tab character. | 53 |
| Line is longer than 80 characters (found 83). | 54 |
| Line contains a tab character. | 54 |
| Line contains a tab character. | 55 |
| Line is longer than 80 characters (found 108). | 56 |
| Line contains a tab character. | 56 |
| Line contains a tab character. | 57 |
| Line contains a tab character. | 58 |
| '{' is not preceded with whitespace. | 58 |
| Line is longer than 80 characters (found 116). | 59 |
| Line contains a tab character. | 59 |
| Line contains a tab character. | 60 |
| Line is longer than 80 characters (found 129). | 61 |
| Line contains a tab character. | 61 |
| Line contains a tab character. | 62 |
| Line contains a tab character. | 63 |
| Line contains a tab character. | 64 |
| Line is longer than 80 characters (found 101). | 66 |
| Line contains a tab character. | 66 |
| Missing a Javadoc comment. | 66 |
| Parameter request should be final. | 66 |
| Parameter response should be final. | 66 |
| Parameter errorText should be final. | 66 |
| Line contains a tab character. | 67 |
| Line contains a tab character. | 68 |
| Line contains a tab character. | 69 |
| Line is longer than 80 characters (found 100). | 70 |
| Line contains a tab character. | 70 |
| Line contains a tab character. | 71 |
| Line is longer than 80 characters (found 83). | 73 |
| Line contains a tab character. | 73 |
| Missing a Javadoc comment. | 73 |
| Parameter from should be final. | 73 |
| Parameter messageText should be final. | 73 |
| Parameter config should be final. | 73 |
| Line contains a tab character. | 74 |
| '{' is not preceded with whitespace. | 74 |
| Line contains a tab character. | 75 |
| 'try' is not followed by whitespace. | 75 |
| '{' is not preceded with whitespace. | 75 |
| Line contains a tab character. | 78 |
| Line contains a tab character. | 79 |
| Line contains a tab character. | 80 |
| Line contains a tab character. | 81 |
| Line is longer than 80 characters (found 81). | 82 |
| Line contains a tab character. | 82 |
| Line is longer than 80 characters (found 83). | 83 |
| Line contains a tab character. | 83 |
| Line contains a tab character. | 84 |
| Line contains a tab character. | 85 |
| Line contains a tab character. | 86 |
| Line contains a tab character. | 87 |
| '{' is not preceded with whitespace. | 87 |
| Line is longer than 80 characters (found 81). | 88 |
| Line contains a tab character. | 88 |
| Line contains a tab character. | 89 |
| Violation | Message | Line |
|---|---|---|
| Using the '.*' form of import should be avoided - java.util.*. | 10 |
| Using the '.*' form of import should be avoided - javax.management.*. | 11 |
| Using the '.*' form of import should be avoided - uk.ac.ebi.intenz.domain.enzyme.*. | 24 |
| Line is longer than 80 characters (found 94). | 38 |
| Line is longer than 80 characters (found 113). | 39 |
| Line contains a tab character. | 48 |
| Missing a Javadoc comment. | 48 |
| Line has trailing spaces. | 49 |
| Line contains a tab character. | 49 |
| Line contains a tab character. | 50 |
| Missing a Javadoc comment. | 50 |
| Name 'LOGGER' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 50 |
| Missing a Javadoc comment. | 53 |
| Missing a Javadoc comment. | 55 |
| Line contains a tab character. | 57 |
| Method 'init' is not designed for extension - needs to be abstract, final or empty. | 57 |
| Missing a Javadoc comment. | 57 |
| Parameter servletConfig should be final. | 57 |
| Line contains a tab character. | 58 |
| Line contains a tab character. | 59 |
| Line contains a tab character. | 60 |
| Line contains a tab character. | 61 |
| Line contains a tab character. | 62 |
| Line contains a tab character. | 63 |
| Line contains a tab character. | 66 |
| Method 'destroy' is not designed for extension - needs to be abstract, final or empty. | 66 |
| Line contains a tab character. | 67 |
| '{' is not preceded with whitespace. | 74 |
| '{' is not preceded with whitespace. | 77 |
| Line contains a tab character. | 80 |
| Line contains a tab character. | 81 |
| Line contains a tab character. | 83 |
| Line contains a tab character. | 84 |
| Line contains a tab character. | 85 |
| Line contains a tab character. | 86 |
| Line contains a tab character. | 87 |
| Expected @throws tag for 'ServletException'. | 87 |
| Line contains a tab character. | 88 |
| Line contains a tab character. | 89 |
| Line is longer than 80 characters (found 84). | 90 |
| Line contains a tab character. | 90 |
| Line contains a tab character. | 91 |
| Line contains a tab character. | 92 |
| Line contains a tab character. | 93 |
| Line contains a tab character. | 94 |
| First sentence should end with a period. | 96 |
| Line contains a tab character. | 96 |
| Line contains a tab character. | 97 |
| Line contains a tab character. | 98 |
| Line contains a tab character. | 99 |
| Line contains a tab character. | 100 |
| Line contains a tab character. | 101 |
| Line contains a tab character. | 102 |
| Line contains a tab character. | 103 |
| Line contains a tab character. | 104 |
| Expected @throws tag for 'ServletException'. | 104 |
| Line contains a tab character. | 105 |
| Line contains a tab character. | 106 |
| Line contains a tab character. | 107 |
| Line is longer than 80 characters (found 84). | 108 |
| Line contains a tab character. | 108 |
| Line is longer than 80 characters (found 95). | 109 |
| Line contains a tab character. | 109 |
| Line is longer than 80 characters (found 97). | 110 |
| Line contains a tab character. | 110 |
| Line contains a tab character. | 112 |
| Line is longer than 80 characters (found 102). | 113 |
| Line contains a tab character. | 113 |
| Line contains a tab character. | 114 |
| Line is longer than 80 characters (found 84). | 115 |
| Line contains a tab character. | 115 |
| Line is longer than 80 characters (found 86). | 116 |
| Line contains a tab character. | 116 |
| Line contains a tab character. | 117 |
| Line contains a tab character. | 118 |
| Line is longer than 80 characters (found 94). | 119 |
| Line contains a tab character. | 119 |
| Line contains a tab character. | 120 |
| Line contains a tab character. | 121 |
| Line is longer than 80 characters (found 97). | 122 |
| Line contains a tab character. | 122 |
| Line contains a tab character. | 123 |
| Line contains a tab character. | 124 |
| Line is longer than 80 characters (found 86). | 125 |
| Line contains a tab character. | 125 |
| Line contains a tab character. | 126 |
| Line contains a tab character. | 127 |
| Line contains a tab character. | 128 |
| Line contains a tab character. | 129 |
| Line contains a tab character. | 130 |
| Line is longer than 80 characters (found 88). | 131 |
| Line contains a tab character. | 131 |
| Line contains a tab character. | 132 |
| Line contains a tab character. | 133 |
| Line contains a tab character. | 134 |
| Line contains a tab character. | 135 |
| First sentence should end with a period. | 137 |
| Line contains a tab character. | 137 |
| Line contains a tab character. | 138 |
| Line contains a tab character. | 139 |
| Line contains a tab character. | 140 |
| Line contains a tab character. | 141 |
| Line contains a tab character. | 142 |
| Line contains a tab character. | 143 |
| Line contains a tab character. | 144 |
| Line contains a tab character. | 145 |
| Line contains a tab character. | 146 |
| Line contains a tab character. | 147 |
| '{' is not preceded with whitespace. | 159 |
| '{' is not preceded with whitespace. | 164 |
| Line contains a tab character. | 167 |
| Line contains a tab character. | 169 |
| Line contains a tab character. | 170 |
| Line contains a tab character. | 171 |
| Line contains a tab character. | 172 |
| Line contains a tab character. | 173 |
| Line contains a tab character. | 174 |
| '4500' is a magic number. | 174 |
| Line contains a tab character. | 175 |
| Line contains a tab character. | 176 |
| Line is longer than 80 characters (found 88). | 177 |
| Line contains a tab character. | 177 |
| '4500' is a magic number. | 177 |
| Line contains a tab character. | 178 |
| Line contains a tab character. | 179 |
| Line is longer than 80 characters (found 87). | 180 |
| Line contains a tab character. | 180 |
| '100' is a magic number. | 180 |
| Line is longer than 80 characters (found 85). | 181 |
| Line contains a tab character. | 181 |
| Line contains a tab character. | 182 |
| Line contains a tab character. | 183 |
| Line is longer than 80 characters (found 84). | 184 |
| Line contains a tab character. | 184 |
| '250' is a magic number. | 184 |
| Line is longer than 80 characters (found 81). | 185 |
| Line contains a tab character. | 185 |
| Line contains a tab character. | 186 |
| Line contains a tab character. | 187 |
| '65' is a magic number. | 187 |
| Line contains a tab character. | 188 |
| Line contains a tab character. | 189 |
| Line contains a tab character. | 190 |
| '6' is a magic number. | 190 |
| Line contains a tab character. | 191 |
| Line contains a tab character. | 192 |
| Line contains a tab character. | 194 |
| Line contains a tab character. | 195 |
| Line contains a tab character. | 196 |
| Line contains a tab character. | 197 |
| Line contains a tab character. | 198 |
| Line contains a tab character. | 199 |
| Line contains a tab character. | 200 |
| Line contains a tab character. | 201 |
| Line contains a tab character. | 202 |
| Line is longer than 80 characters (found 95). | 203 |
| Line contains a tab character. | 203 |
| Line contains a tab character. | 204 |
| Line is longer than 80 characters (found 83). | 205 |
| Line contains a tab character. | 205 |
| Line contains a tab character. | 206 |
| Line contains a tab character. | 207 |
| Line contains a tab character. | 208 |
| Line contains a tab character. | 209 |
| '{' is not preceded with whitespace. | 209 |
| Line contains a tab character. | 210 |
| Line contains a tab character. | 211 |
| Line contains a tab character. | 212 |
| Line is longer than 80 characters (found 86). | 213 |
| Line contains a tab character. | 213 |
| Line contains a tab character. | 214 |
| Line contains a tab character. | 215 |
| Line contains a tab character. | 216 |
| Line contains a tab character. | 217 |
| Line is longer than 80 characters (found 85). | 219 |
| Line contains a tab character. | 219 |
| Method 'service' is not designed for extension - needs to be abstract, final or empty. | 219 |
| Missing a Javadoc comment. | 219 |
| Parameter request should be final. | 219 |
| Parameter response should be final. | 219 |
| Line contains a tab character. | 220 |
| Line contains a tab character. | 221 |
| Line contains a tab character. | 222 |
| Line contains a tab character. | 223 |
| Line contains a tab character. | 225 |
| Line is longer than 80 characters (found 92). | 226 |
| Line contains a tab character. | 226 |
| Line is longer than 80 characters (found 92). | 227 |
| Line contains a tab character. | 227 |
| Line contains a tab character. | 228 |
| Line contains a tab character. | 229 |
| Line is longer than 80 characters (found 101). | 230 |
| Line contains a tab character. | 230 |
| Line is longer than 80 characters (found 96). | 231 |
| Line contains a tab character. | 231 |
| Line contains a tab character. | 232 |
| Line contains a tab character. | 234 |
| Line contains a tab character. | 235 |
| Line contains a tab character. | 236 |
| Line contains a tab character. | 237 |
| Line contains a tab character. | 238 |
| Line is longer than 80 characters (found 92). | 239 |
| Line contains a tab character. | 239 |
| Line contains a tab character. | 240 |
| Line is longer than 80 characters (found 100). | 241 |
| Line contains a tab character. | 241 |
| Line is longer than 80 characters (found 83). | 242 |
| Line contains a tab character. | 242 |
| Line contains a tab character. | 243 |
| Line contains a tab character. | 244 |
| Line is longer than 80 characters (found 84). | 245 |
| Line contains a tab character. | 245 |
| Line is longer than 80 characters (found 92). | 246 |
| Line contains a tab character. | 246 |
| Line contains a tab character. | 247 |
| Line contains a tab character. | 248 |
| Line contains a tab character. | 249 |
| Line contains a tab character. | 250 |
| Line contains a tab character. | 252 |
| Missing a Javadoc comment. | 252 |
| Parameter request should be final. | 252 |
| Line contains a tab character. | 253 |
| Line contains a tab character. | 254 |
| Line contains a tab character. | 255 |
| Line contains a tab character. | 256 |
| Line is longer than 80 characters (found 83). | 257 |
| Line contains a tab character. | 257 |
| Line contains a tab character. | 258 |
| Line contains a tab character. | 259 |
| Line contains a tab character. | 260 |
| Line contains a tab character. | 261 |
| Line contains a tab character. | 262 |
| Line contains a tab character. | 264 |
| Missing a Javadoc comment. | 264 |
| Line is longer than 80 characters (found 86). | 265 |
| Line contains a tab character. | 265 |
| Parameter request should be final. | 265 |
| Line contains a tab character. | 266 |
| Line contains a tab character. | 267 |
| Line contains a tab character. | 268 |
| Line contains a tab character. | 269 |
| '{' is not preceded with whitespace. | 269 |
| Line contains a tab character. | 270 |
| Line contains a tab character. | 271 |
| Line is longer than 80 characters (found 93). | 272 |
| Line contains a tab character. | 272 |
| Line contains a tab character. | 273 |
| Line is longer than 80 characters (found 82). | 274 |
| Line contains a tab character. | 274 |
| Line contains a tab character. | 275 |
| Line contains a tab character. | 276 |
| Line contains a tab character. | 277 |
| Line contains a tab character. | 278 |
| Line contains a tab character. | 279 |
| Line contains a tab character. | 281 |
| Missing a Javadoc comment. | 281 |
| Line contains a tab character. | 282 |
| Line contains a tab character. | 283 |
| Line contains a tab character. | 284 |
| Line contains a tab character. | 285 |
| Line contains a tab character. | 286 |
| Method 'propertyChange' is not designed for extension - needs to be abstract, final or empty. | 288 |
| Missing a Javadoc comment. | 288 |
| Parameter evt should be final. | 288 |
| '{' is not preceded with whitespace. | 288 |
| '{' is not preceded with whitespace. | 290 |
| '{' is not preceded with whitespace. | 294 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 18 |
| Variable 'context' must be private and have accessor methods. | 18 |
| Missing a Javadoc comment. | 20 |
| Variable 'request' must be private and have accessor methods. | 20 |
| Missing a Javadoc comment. | 22 |
| Variable 'response' must be private and have accessor methods. | 22 |
| Line is longer than 80 characters (found 100). | 25 |
| Line is longer than 80 characters (found 102). | 31 |
| Method 'init' is not designed for extension - needs to be abstract, final or empty. | 31 |
| Parameter context should be final. | 31 |
| 'context' hides a field. | 31 |
| Parameter request should be final. | 31 |
| 'request' hides a field. | 31 |
| Parameter response should be final. | 31 |
| 'response' hides a field. | 31 |
| Method 'forward' is not designed for extension - needs to be abstract, final or empty. | 44 |
| Parameter target should be final. | 44 |
| Expected @throws tag for 'ServletException'. | 44 |
| Expected @throws tag for 'IOException'. | 44 |
| Violation | Message | Line |
|---|---|---|
| Using the '.*' form of import should be avoided - java.util.*. | 7 |
| Line is longer than 80 characters (found 103). | 25 |
| Line is longer than 80 characters (found 111). | 26 |
| Line is longer than 80 characters (found 118). | 27 |
| Line is longer than 80 characters (found 114). | 29 |
| Comment matches to-do format 'TODO:'. | 32 |
| Missing a Javadoc comment. | 39 |
| Missing a Javadoc comment. | 41 |
| Line is longer than 80 characters (found 99). | 45 |
| '+' should be on a new line. | 50 |
| '+' should be on a new line. | 51 |
| '+' should be on a new line. | 52 |
| Line is longer than 80 characters (found 86). | 59 |
| Line is longer than 80 characters (found 87). | 61 |
| Method 'process' is not designed for extension - needs to be abstract, final or empty. | 66 |
| Method length is 219 lines (max allowed is 150). | 66 |
| '10' is a magic number. | 67 |
| Line is longer than 80 characters (found 116). | 80 |
| Line is longer than 80 characters (found 87). | 100 |
| Line is longer than 80 characters (found 88). | 101 |
| Line is longer than 80 characters (found 110). | 102 |
| Line is longer than 80 characters (found 101). | 128 |
| Line is longer than 80 characters (found 94). | 129 |
| Line is longer than 80 characters (found 99). | 140 |
| Line is longer than 80 characters (found 92). | 141 |
| '{' is not preceded with whitespace. | 157 |
| '{' is not preceded with whitespace. | 159 |
| 'if' construct must use '{}'s. | 170 |
| '{' is not preceded with whitespace. | 179 |
| Line contains a tab character. | 180 |
| Line contains a tab character. | 182 |
| '{' is not preceded with whitespace. | 189 |
| Line is longer than 80 characters (found 109). | 199 |
| Line is longer than 80 characters (found 120). | 205 |
| Line is longer than 80 characters (found 109). | 211 |
| Line is longer than 80 characters (found 98). | 215 |
| '+' should be on a new line. | 215 |
| Line contains a tab character. | 219 |
| Line is longer than 80 characters (found 101). | 230 |
| Line is longer than 80 characters (found 94). | 231 |
| '{' is not preceded with whitespace. | 237 |
| Line is longer than 80 characters (found 88). | 252 |
| Line is longer than 80 characters (found 98). | 253 |
| 'if' construct must use '{}'s. | 267 |
| 'else' construct must use '{}'s. | 269 |
| Line is longer than 80 characters (found 91). | 280 |
| Line is longer than 80 characters (found 84). | 281 |
| Line is longer than 80 characters (found 93). | 286 |
| Missing a Javadoc comment. | 286 |
| '(' is preceded with whitespace. | 286 |
| Parameter e should be final. | 286 |
| Line is longer than 80 characters (found 98). | 290 |
| '+' should be on a new line. | 290 |
| Line is longer than 80 characters (found 146). | 300 |
| Parameter queryString should be final. | 303 |
| Line is longer than 80 characters (found 92). | 310 |
| Line is longer than 80 characters (found 90). | 315 |
| Line is longer than 80 characters (found 94). | 317 |
| Line is longer than 80 characters (found 115). | 319 |
| Parameter queryString should be final. | 319 |
| Parameter isNotParameter should be final. | 319 |
| Expected @param tag for 'isNotParameter'. | 319 |
| 'if' construct must use '{}'s. | 320 |
| Line is longer than 80 characters (found 106). | 322 |
| Line is longer than 80 characters (found 104). | 323 |
| Line is longer than 80 characters (found 81). | 329 |
| 'if' construct must use '{}'s. | 330 |
| Missing a Javadoc comment. | 337 |
| Parameter queryString should be final. | 337 |
| Parameter isNotParameter should be final. | 337 |
| 'if' construct must use '{}'s. | 338 |
| 'if' construct must use '{}'s. | 340 |
| 'else' construct must use '{}'s. | 342 |
| 'if' construct must use '{}'s. | 345 |
| '4' is a magic number. | 349 |
| Missing a Javadoc comment. | 364 |
| Parameter field should be final. | 364 |
| Line is longer than 80 characters (found 98). | 371 |
| Missing a Javadoc comment. | 371 |
| Parameter excludedWords should be final. | 371 |
| Parameter transformQuery should be final. | 371 |
| 'if' construct must use '{}'s. | 372 |
| Line is longer than 80 characters (found 82). | 372 |
| Line is longer than 80 characters (found 119). | 375 |
| Missing a Javadoc comment. | 390 |
| Parameter query should be final. | 390 |
| Line is longer than 80 characters (found 121). | 392 |
| 'if' construct must use '{}'s. | 393 |
| Line is longer than 80 characters (found 110). | 393 |
| '||' should be on a new line. | 393 |
| Line is longer than 80 characters (found 119). | 394 |
| Expected an @return tag. | 408 |
| Line is longer than 80 characters (found 81). | 408 |
| Parameter query should be final. | 408 |
| Expected @param tag for 'query'. | 408 |
| Parameter type should be final. | 408 |
| Expected @throws tag for 'QueryException'. | 408 |
| Line is longer than 80 characters (found 108). | 413 |
| Method 'transformQuery' is not designed for extension - needs to be abstract, final or empty. | 413 |
| Missing a Javadoc comment. | 413 |
| Parameter query should be final. | 413 |
| Parameter queryType should be final. | 413 |
| Parameter exclusion should be final. | 413 |
| Line is longer than 80 characters (found 101). | 416 |
| Line is longer than 80 characters (found 100). | 419 |
| 'if' construct must use '{}'s. | 429 |
| '80' is a magic number. | 430 |
| '+' should be on a new line. | 430 |
| 'if' construct must use '{}'s. | 433 |
| '10' is a magic number. | 433 |
| 'if' construct must use '{}'s. | 448 |
| Line is longer than 80 characters (found 101). | 449 |
| Expected an @return tag. | 463 |
| Parameter query should be final. | 463 |
| Expected @param tag for 'query'. | 463 |
| Line is longer than 80 characters (found 84). | 470 |
| Line is longer than 80 characters (found 102). | 472 |
| Parameter query should be final. | 478 |
| Line is longer than 80 characters (found 93). | 480 |
| Line is longer than 80 characters (found 88). | 487 |
| Line is longer than 80 characters (found 101). | 491 |
| Parameter query should be final. | 496 |
| 'if' construct must use '{}'s. | 504 |
| 'if' construct must use '{}'s. | 506 |
| 'else' construct must use '{}'s. | 508 |
| switch without "default" clause. | 510 |
| Line is longer than 80 characters (found 112). | 528 |
| Line is longer than 80 characters (found 97). | 533 |
| Parameter preceeding should be final. | 535 |
| Parameter current should be final. | 535 |
| Parameter next should be final. | 535 |
| Line is longer than 80 characters (found 130). | 536 |
| 'if' construct must use '{}'s. | 540 |
| Line is longer than 80 characters (found 126). | 540 |
| 'if' construct must use '{}'s. | 541 |
| Line is longer than 80 characters (found 89). | 547 |
| Parameter query should be final. | 555 |
| Parameter type should be final. | 555 |
| Line is longer than 80 characters (found 106). | 559 |
| 'if' construct must use '{}'s. | 562 |
| 'if' construct must use '{}'s. | 564 |
| Line is longer than 80 characters (found 113). | 577 |
| Parameter query should be final. | 583 |
| 'if' construct must use '{}'s. | 592 |
| '-' is followed by whitespace. | 592 |
| 'if' construct must use '{}'s. | 594 |
| '-' is followed by whitespace. | 594 |
| 'if' construct must use '{}'s. | 596 |
| '-' is followed by whitespace. | 596 |
| 'if' construct must use '{}'s. | 598 |
| '-' is followed by whitespace. | 598 |
| 'if' construct must use '{}'s. | 600 |
| '-' is followed by whitespace. | 600 |
| 'if' construct must use '{}'s. | 602 |
| '-' is followed by whitespace. | 602 |
| 'if' construct must use '{}'s. | 604 |
| '-' is followed by whitespace. | 604 |
| 'if' construct must use '{}'s. | 606 |
| '-' is followed by whitespace. | 606 |
| 'if' construct must use '{}'s. | 608 |
| '-' is followed by whitespace. | 608 |
| 'if' construct must use '{}'s. | 610 |
| '-' is followed by whitespace. | 610 |
| 'if' construct must use '{}'s. | 612 |
| '-' is followed by whitespace. | 612 |
| 'if' construct must use '{}'s. | 614 |
| '-' is followed by whitespace. | 614 |
| 'if' construct must use '{}'s. | 616 |
| '-' is followed by whitespace. | 616 |
| 'if' construct must use '{}'s. | 618 |
| '-' is followed by whitespace. | 618 |
| 'if' construct must use '{}'s. | 620 |
| '-' is followed by whitespace. | 620 |
| 'if' construct must use '{}'s. | 622 |
| '-' is followed by whitespace. | 622 |
| 'if' construct must use '{}'s. | 624 |
| '-' is followed by whitespace. | 624 |
| 'if' construct must use '{}'s. | 626 |
| '-' is followed by whitespace. | 626 |
| 'if' construct must use '{}'s. | 628 |
| '-' is followed by whitespace. | 628 |
| 'if' construct must use '{}'s. | 630 |
| '-' is followed by whitespace. | 630 |
| 'if' construct must use '{}'s. | 632 |
| '-' is followed by whitespace. | 632 |
| 'if' construct must use '{}'s. | 634 |
| '-' is followed by whitespace. | 634 |
| Parameter query should be final. | 645 |
| Line is longer than 80 characters (found 106). | 647 |
| 'if' construct must use '{}'s. | 649 |
| '200' is a magic number. | 649 |
| Parameter detaggedQuery should be final. | 660 |
| Line is longer than 80 characters (found 142). | 662 |
| Parameter word should be final. | 674 |
| 'if' construct must use '{}'s. | 676 |
| '||' should be on a new line. | 676 |
| '||' should be on a new line. | 677 |
| '||' should be on a new line. | 678 |
| Parameter query should be final. | 691 |
| Line is longer than 80 characters (found 106). | 694 |
| Parameter result should be final. | 714 |
| Parameter start should be final. | 714 |
| Parameter end should be final. | 714 |
| Class QueryType should be declared as final. | 731 |
| Missing a Javadoc comment. | 731 |
| Missing a Javadoc comment. | 732 |
| Missing a Javadoc comment. | 733 |
| Missing a Javadoc comment. | 734 |
| Missing a Javadoc comment. | 735 |
| Unused @throws tag for 'IllegalArgumentException'. | 744 |
| Parameter type should be final. | 746 |
| 'if' construct must use '{}'s. | 747 |
| Line is longer than 80 characters (found 94). | 747 |
| 'if' construct must use '{}'s. | 749 |
| 'if' construct must use '{}'s. | 750 |
| 'if' construct must use '{}'s. | 751 |
| Parameter type should be final. | 760 |
| 'type' hides a field. | 760 |
| Parameter o should be final. | 770 |
| 'if' construct must use '{}'s. | 771 |
| 'if' construct must use '{}'s. | 772 |
| 'if' construct must use '{}'s. | 776 |
| Line is longer than 80 characters (found 93). | 776 |
| Avoid inline conditionals. | 776 |
| Avoid inline conditionals. | 787 |
| Missing a Javadoc comment. | 800 |
| Missing a Javadoc comment. | 801 |
| Missing a Javadoc comment. | 802 |
| Missing a Javadoc comment. | 803 |
| Missing a Javadoc comment. | 804 |
| Missing a Javadoc comment. | 805 |
| Missing a Javadoc comment. | 806 |
| Missing a Javadoc comment. | 807 |
| Parameter text should be final. | 807 |
| Parameter order should be final. | 807 |
| '{' is not preceded with whitespace. | 807 |
| 'if' construct must use '{}'s. | 808 |
| Line is longer than 80 characters (found 82). | 808 |
| Missing a Javadoc comment. | 811 |
| Parameter i should be final. | 811 |
| Missing a Javadoc comment. | 814 |
| '{' is not preceded with whitespace. | 814 |
| Line is longer than 80 characters (found 86). | 816 |
| '{' is not preceded with whitespace. | 816 |
| Method 'getEc' is not designed for extension - needs to be abstract, final or empty. | 821 |
| Missing a Javadoc comment. | 821 |
| Method 'getId' is not designed for extension - needs to be abstract, final or empty. | 824 |
| Missing a Javadoc comment. | 824 |
| Method 'getCommonName' is not designed for extension - needs to be abstract, final or empty. | 827 |
| Missing a Javadoc comment. | 827 |
| Method 'getStatus' is not designed for extension - needs to be abstract, final or empty. | 830 |
| Missing a Javadoc comment. | 830 |
| Method 'isActive' is not designed for extension - needs to be abstract, final or empty. | 833 |
| Missing a Javadoc comment. | 833 |
| '{' is not preceded with whitespace. | 833 |
| Violation | Message | Line |
|---|---|---|
| Using the '.*' form of import should be avoided - uk.ac.ebi.intenz.domain.enzyme.*. | 13 |
| Line has trailing spaces. | 24 |
| Line is longer than 80 characters (found 84). | 30 |
| Line contains a tab character. | 30 |
| Missing a Javadoc comment. | 30 |
| Line contains a tab character. | 32 |
| Missing a Javadoc comment. | 32 |
| Line is longer than 80 characters (found 87). | 33 |
| Line contains a tab character. | 33 |
| Missing a Javadoc comment. | 33 |
| Line is longer than 80 characters (found 96). | 34 |
| Line contains a tab character. | 34 |
| Missing a Javadoc comment. | 34 |
| Line contains a tab character. | 36 |
| Line contains a tab character. | 37 |
| Line contains a tab character. | 38 |
| Line contains a tab character. | 39 |
| Line contains a tab character. | 40 |
| Line contains a tab character. | 41 |
| Method 'process' is not designed for extension - needs to be abstract, final or empty. | 41 |
| Expected @throws tag for 'ServletException'. | 41 |
| Expected @throws tag for 'IOException'. | 41 |
| Line contains a tab character. | 42 |
| Line contains a tab character. | 43 |
| Line contains a tab character. | 44 |
| Line contains a tab character. | 45 |
| Line contains a tab character. | 47 |
| Line contains a tab character. | 48 |
| Line is longer than 80 characters (found 113). | 49 |
| Line contains a tab character. | 49 |
| Line contains a tab character. | 50 |
| Line contains a tab character. | 51 |
| Line contains a tab character. | 52 |
| Line contains a tab character. | 54 |
| Line contains a tab character. | 55 |
| Line contains a tab character. | 56 |
| Line contains a tab character. | 57 |
| Line is longer than 80 characters (found 86). | 58 |
| Line contains a tab character. | 58 |
| Line is longer than 80 characters (found 99). | 59 |
| Line contains a tab character. | 59 |
| Line contains a tab character. | 60 |
| Line contains a tab character. | 61 |
| Line contains a tab character. | 62 |
| Line contains a tab character. | 63 |
| Line contains a tab character. | 64 |
| Line is longer than 80 characters (found 91). | 65 |
| Line contains a tab character. | 65 |
| Line contains a tab character. | 66 |
| Line contains a tab character. | 67 |
| Line contains a tab character. | 68 |
| Line contains a tab character. | 70 |
| switch without "default" clause. | 70 |
| Line contains a tab character. | 71 |
| Line contains a tab character. | 72 |
| Line contains a tab character. | 73 |
| Line contains a tab character. | 74 |
| Line contains a tab character. | 75 |
| Line contains a tab character. | 76 |
| Line contains a tab character. | 77 |
| Line contains a tab character. | 78 |
| Line contains a tab character. | 79 |
| Line contains a tab character. | 80 |
| Line contains a tab character. | 81 |
| Line is longer than 80 characters (found 88). | 82 |
| Line contains a tab character. | 82 |
| Line contains a tab character. | 83 |
| Line contains a tab character. | 84 |
| Line contains a tab character. | 85 |
| Line contains a tab character. | 86 |
| Line contains a tab character. | 88 |
| Line contains a tab character. | 89 |
| Line has trailing spaces. | 90 |
| Line contains a tab character. | 90 |
| Line contains a tab character. | 91 |
| Line contains a tab character. | 92 |
| Line contains a tab character. | 93 |
| Line contains a tab character. | 94 |
| Line contains a tab character. | 95 |
| Line contains a tab character. | 96 |
| Expected an @return tag. | 97 |
| Line is longer than 80 characters (found 81). | 97 |
| Line contains a tab character. | 97 |
| Parameter paramStatus should be final. | 97 |
| Parameter ec should be final. | 97 |
| Line contains a tab character. | 98 |
| Line contains a tab character. | 99 |
| Line contains a tab character. | 100 |
| Line contains a tab character. | 101 |
| Line contains a tab character. | 102 |
| Avoid inline conditionals. | 102 |
| Line contains a tab character. | 103 |
| Line contains a tab character. | 104 |
| Line contains a tab character. | 105 |
| Line contains a tab character. | 107 |
| Missing a Javadoc comment. | 107 |
| Parameter ec should be final. | 107 |
| Line contains a tab character. | 108 |
| Line contains a tab character. | 110 |
| Line contains a tab character. | 111 |
| Line contains a tab character. | 112 |
| Line contains a tab character. | 113 |
| Line contains a tab character. | 114 |
| Line contains a tab character. | 115 |
| Line contains a tab character. | 116 |
| Line contains a tab character. | 117 |
| Line is longer than 80 characters (found 92). | 118 |
| Line contains a tab character. | 118 |
| Line contains a tab character. | 119 |
| Line contains a tab character. | 120 |
| Line contains a tab character. | 121 |
| Line contains a tab character. | 122 |
| Line contains a tab character. | 123 |
| Line contains a tab character. | 125 |
| Missing a Javadoc comment. | 125 |
| Parameter ec should be final. | 125 |
| Line contains a tab character. | 126 |
| Line contains a tab character. | 128 |
| Line contains a tab character. | 129 |
| Line contains a tab character. | 130 |
| Line contains a tab character. | 131 |
| Line contains a tab character. | 132 |
| Line contains a tab character. | 133 |
| Line contains a tab character. | 134 |
| Line contains a tab character. | 135 |
| Line is longer than 80 characters (found 92). | 136 |
| Line contains a tab character. | 136 |
| Line contains a tab character. | 137 |
| Line contains a tab character. | 138 |
| Line contains a tab character. | 139 |
| Line contains a tab character. | 140 |
| Line contains a tab character. | 141 |
| Line contains a tab character. | 143 |
| Missing a Javadoc comment. | 143 |
| Parameter ec should be final. | 143 |
| Line contains a tab character. | 144 |
| Line contains a tab character. | 146 |
| Line contains a tab character. | 147 |
| Line contains a tab character. | 148 |
| Line contains a tab character. | 149 |
| Line contains a tab character. | 150 |
| Line contains a tab character. | 151 |
| Line contains a tab character. | 152 |
| Line contains a tab character. | 153 |
| Line is longer than 80 characters (found 92). | 154 |
| Line contains a tab character. | 154 |
| Line contains a tab character. | 155 |
| Line contains a tab character. | 156 |
| Line contains a tab character. | 157 |
| Line contains a tab character. | 158 |
| Line contains a tab character. | 159 |
| Line contains a tab character. | 161 |
| Missing a Javadoc comment. | 161 |
| Parameter ec should be final. | 161 |
| Parameter status should be final. | 161 |
| Line contains a tab character. | 162 |
| Line contains a tab character. | 163 |
| Line contains a tab character. | 164 |
| Line contains a tab character. | 165 |
| Line contains a tab character. | 166 |
| Line contains a tab character. | 167 |
| Line contains a tab character. | 168 |
| Line contains a tab character. | 169 |
| Line contains a tab character. | 170 |
| Line is longer than 80 characters (found 92). | 171 |
| Line contains a tab character. | 171 |
| Line contains a tab character. | 172 |
| Line contains a tab character. | 173 |
| Line contains a tab character. | 174 |
| Line contains a tab character. | 175 |
| Line contains a tab character. | 176 |
| Line contains a tab character. | 178 |
| Line is longer than 80 characters (found 83). | 179 |
| Line contains a tab character. | 179 |
| Line contains a tab character. | 180 |
| Line has trailing spaces. | 181 |
| Line contains a tab character. | 181 |
| Line contains a tab character. | 182 |
| Line contains a tab character. | 183 |
| Line contains a tab character. | 184 |
| Line contains a tab character. | 185 |
| Line contains a tab character. | 186 |
| Method 'findEnzymeClass' is not designed for extension - needs to be abstract, final or empty. | 186 |
| Parameter ec should be final. | 186 |
| 'if' construct must use '{}'s. | 187 |
| Line contains a tab character. | 187 |
| Line contains a tab character. | 188 |
| Line contains a tab character. | 190 |
| Line is longer than 80 characters (found 86). | 191 |
| Line contains a tab character. | 191 |
| Line contains a tab character. | 192 |
| Line is longer than 80 characters (found 121). | 193 |
| Line contains a tab character. | 193 |
| Line contains a tab character. | 194 |
| Line contains a tab character. | 196 |
| Line contains a tab character. | 197 |
| Line contains a tab character. | 198 |
| Line is longer than 80 characters (found 85). | 199 |
| Line contains a tab character. | 199 |
| Line contains a tab character. | 200 |
| Line contains a tab character. | 201 |
| Line is longer than 80 characters (found 93). | 202 |
| Line contains a tab character. | 202 |
| Line contains a tab character. | 203 |
| Line contains a tab character. | 204 |
| Line contains a tab character. | 205 |
| Line is longer than 80 characters (found 85). | 206 |
| Line contains a tab character. | 206 |
| Line contains a tab character. | 207 |
| Line contains a tab character. | 208 |
| Line contains a tab character. | 209 |
| Line is longer than 80 characters (found 87). | 210 |
| Line contains a tab character. | 210 |
| Line is longer than 80 characters (found 92). | 211 |
| Line contains a tab character. | 211 |
| Line contains a tab character. | 212 |
| Line contains a tab character. | 213 |
| Line contains a tab character. | 214 |
| Line contains a tab character. | 215 |
| Line contains a tab character. | 216 |
| Line is longer than 80 characters (found 104). | 217 |
| Line contains a tab character. | 217 |
| Line is longer than 80 characters (found 81). | 218 |
| Line contains a tab character. | 218 |
| Line is longer than 80 characters (found 81). | 219 |
| Line contains a tab character. | 219 |
| Line is longer than 80 characters (found 85). | 220 |
| Line contains a tab character. | 220 |
| Line is longer than 80 characters (found 92). | 221 |
| Line contains a tab character. | 221 |
| Line is longer than 80 characters (found 100). | 222 |
| Line contains a tab character. | 222 |
| Line contains a tab character. | 223 |
| Line contains a tab character. | 224 |
| Line contains a tab character. | 225 |
| Line contains a tab character. | 226 |
| Line contains a tab character. | 228 |
| Line contains a tab character. | 229 |
| Line contains a tab character. | 231 |
| Line is longer than 80 characters (found 83). | 232 |
| Line contains a tab character. | 232 |
| Line contains a tab character. | 233 |
| Line has trailing spaces. | 234 |
| Line contains a tab character. | 234 |
| Line contains a tab character. | 235 |
| Line contains a tab character. | 236 |
| Line contains a tab character. | 237 |
| Line contains a tab character. | 238 |
| Unused @throws tag for 'NullPointerException'. | 238 |
| Line contains a tab character. | 239 |
| Line contains a tab character. | 240 |
| Line contains a tab character. | 241 |
| Method 'findEnzymeSubclass' is not designed for extension - needs to be abstract, final or empty. | 241 |
| Parameter ec should be final. | 241 |
| 'if' construct must use '{}'s. | 242 |
| Line contains a tab character. | 242 |
| Line contains a tab character. | 243 |
| Line contains a tab character. | 245 |
| Line is longer than 80 characters (found 86). | 246 |
| Line contains a tab character. | 246 |
| Line contains a tab character. | 247 |
| Line is longer than 80 characters (found 130). | 248 |
| Line contains a tab character. | 248 |
| Line contains a tab character. | 249 |
| Line contains a tab character. | 251 |
| Line contains a tab character. | 252 |
| Line contains a tab character. | 253 |
| Line is longer than 80 characters (found 85). | 254 |
| Line contains a tab character. | 254 |
| Line contains a tab character. | 255 |
| Line contains a tab character. | 256 |
| Line contains a tab character. | 257 |
| Line is longer than 80 characters (found 84). | 258 |
| Line contains a tab character. | 258 |
| Line contains a tab character. | 259 |
| Line contains a tab character. | 260 |
| Line is longer than 80 characters (found 91). | 261 |
| Line contains a tab character. | 261 |
| Line contains a tab character. | 262 |
| Line contains a tab character. | 263 |
| Line contains a tab character. | 264 |
| Line is longer than 80 characters (found 87). | 265 |
| Line contains a tab character. | 265 |
| Line is longer than 80 characters (found 92). | 266 |
| Line contains a tab character. | 266 |
| Line contains a tab character. | 267 |
| Line contains a tab character. | 268 |
| Line contains a tab character. | 269 |
| Line contains a tab character. | 270 |
| Line contains a tab character. | 271 |
| Line is longer than 80 characters (found 104). | 272 |
| Line contains a tab character. | 272 |
| Line is longer than 80 characters (found 81). | 273 |
| Line contains a tab character. | 273 |
| Line is longer than 80 characters (found 81). | 274 |
| Line contains a tab character. | 274 |
| Line is longer than 80 characters (found 85). | 275 |
| Line contains a tab character. | 275 |
| Line is longer than 80 characters (found 92). | 276 |
| Line contains a tab character. | 276 |
| Line is longer than 80 characters (found 100). | 277 |
| Line contains a tab character. | 277 |
| Line contains a tab character. | 278 |
| Line contains a tab character. | 279 |
| Line contains a tab character. | 280 |
| Line contains a tab character. | 281 |
| Line contains a tab character. | 282 |
| Line contains a tab character. | 283 |
| Line contains a tab character. | 285 |
| Line is longer than 80 characters (found 83). | 286 |
| Line contains a tab character. | 286 |
| Line contains a tab character. | 287 |
| Line has trailing spaces. | 288 |
| Line contains a tab character. | 288 |
| Line contains a tab character. | 289 |
| Line contains a tab character. | 290 |
| Line contains a tab character. | 291 |
| Line contains a tab character. | 292 |
| Unused @throws tag for 'NullPointerException'. | 292 |
| Line contains a tab character. | 293 |
| Line contains a tab character. | 294 |
| Line is longer than 80 characters (found 86). | 295 |
| Line contains a tab character. | 295 |
| Method 'findEnzymeSubSubclass' is not designed for extension - needs to be abstract, final or empty. | 295 |
| Parameter ec should be final. | 295 |
| 'if' construct must use '{}'s. | 296 |
| Line contains a tab character. | 296 |
| Line contains a tab character. | 297 |
| Line contains a tab character. | 299 |
| Line is longer than 80 characters (found 86). | 300 |
| Line contains a tab character. | 300 |
| Line contains a tab character. | 301 |
| Line is longer than 80 characters (found 139). | 302 |
| Line contains a tab character. | 302 |
| Line contains a tab character. | 303 |
| Line contains a tab character. | 305 |
| Line contains a tab character. | 306 |
| Line is longer than 80 characters (found 86). | 307 |
| Line contains a tab character. | 307 |
| Line is longer than 80 characters (found 85). | 308 |
| Line contains a tab character. | 308 |
| Line contains a tab character. | 309 |
| Line contains a tab character. | 310 |
| Line is longer than 80 characters (found 87). | 311 |
| Line contains a tab character. | 311 |
| Line contains a tab character. | 312 |
| Line contains a tab character. | 313 |
| Line is longer than 80 characters (found 81). | 314 |
| Line contains a tab character. | 314 |
| Line is longer than 80 characters (found 97). | 315 |
| Line contains a tab character. | 315 |
| Line contains a tab character. | 316 |
| Line contains a tab character. | 317 |
| Line contains a tab character. | 318 |
| Line is longer than 80 characters (found 104). | 319 |
| Line contains a tab character. | 319 |
| Line is longer than 80 characters (found 81). | 320 |
| Line contains a tab character. | 320 |
| Line is longer than 80 characters (found 81). | 321 |
| Line contains a tab character. | 321 |
| Line is longer than 80 characters (found 85). | 322 |
| Line contains a tab character. | 322 |
| Line is longer than 80 characters (found 92). | 323 |
| Line contains a tab character. | 323 |
| Line is longer than 80 characters (found 100). | 324 |
| Line contains a tab character. | 324 |
| Line contains a tab character. | 325 |
| Line contains a tab character. | 326 |
| Line contains a tab character. | 327 |
| Line contains a tab character. | 328 |
| Line is longer than 80 characters (found 85). | 329 |
| Line contains a tab character. | 329 |
| Line contains a tab character. | 330 |
| Line is longer than 80 characters (found 100). | 331 |
| Line contains a tab character. | 331 |
| Line contains a tab character. | 332 |
| Line contains a tab character. | 333 |
| Line contains a tab character. | 334 |
| Line contains a tab character. | 335 |
| Line contains a tab character. | 336 |
| Line contains a tab character. | 337 |
| Line contains a tab character. | 339 |
| Line contains a tab character. | 340 |
| Line contains a tab character. | 341 |
| Line contains a tab character. | 342 |
| Line contains a tab character. | 343 |
| Line contains a tab character. | 344 |
| Line contains a tab character. | 345 |
| Line contains a tab character. | 346 |
| Line contains a tab character. | 347 |
| Line contains a tab character. | 348 |
| Line contains a tab character. | 349 |
| Line has trailing spaces. | 350 |
| Line contains a tab character. | 350 |
| Line contains a tab character. | 351 |
| Line contains a tab character. | 352 |
| Line contains a tab character. | 353 |
| Line contains a tab character. | 354 |
| Line contains a tab character. | 355 |
| Method 'analyseECType' is not designed for extension - needs to be abstract, final or empty. | 355 |
| Parameter ec should be final. | 355 |
| Line contains a tab character. | 356 |
| Line is longer than 80 characters (found 100). | 357 |
| Line contains a tab character. | 357 |
| Line contains a tab character. | 358 |
| Line contains a tab character. | 359 |
| Line contains a tab character. | 360 |
| Line contains a tab character. | 361 |
| Line contains a tab character. | 363 |
| Line contains a tab character. | 364 |
| Line contains a tab character. | 366 |
| Line contains a tab character. | 368 |
| Line is longer than 80 characters (found 83). | 369 |
| Line contains a tab character. | 369 |
| Line contains a tab character. | 370 |
| Line has trailing spaces. | 371 |
| Line contains a tab character. | 371 |
| Line contains a tab character. | 372 |
| Line contains a tab character. | 373 |
| Line contains a tab character. | 374 |
| Line contains a tab character. | 375 |
| Line contains a tab character. | 376 |
| Line contains a tab character. | 377 |
| Unused @throws tag for 'NullPointerException'. | 377 |
| Line contains a tab character. | 378 |
| Line contains a tab character. | 379 |
| Line contains a tab character. | 380 |
| Method 'findEnzymeEntry' is not designed for extension - needs to be abstract, final or empty. | 380 |
| Parameter ec should be final. | 380 |
| Line contains a tab character. | 381 |
| Parameter status should be final. | 381 |
| 'if' construct must use '{}'s. | 382 |
| Line contains a tab character. | 382 |
| Line contains a tab character. | 383 |
| Line contains a tab character. | 385 |
| Line is longer than 80 characters (found 86). | 386 |
| Line contains a tab character. | 386 |
| Line contains a tab character. | 387 |
| Line is longer than 80 characters (found 115). | 388 |
| Line contains a tab character. | 388 |
| Line contains a tab character. | 389 |
| Line contains a tab character. | 391 |
| Line contains a tab character. | 392 |
| Line contains a tab character. | 393 |
| Line contains a tab character. | 394 |
| Line contains a tab character. | 395 |
| Line contains a tab character. | 396 |
| Line is longer than 80 characters (found 88). | 397 |
| Line contains a tab character. | 397 |
| Name 'enzyme_id' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 397 |
| Line contains a tab character. | 398 |
| 'if' construct must use '{}'s. | 399 |
| Line contains a tab character. | 399 |
| Line contains a tab character. | 400 |
| Line is longer than 80 characters (found 89). | 401 |
| Line contains a tab character. | 401 |
| 'if' construct must use '{}'s. | 402 |
| Line contains a tab character. | 402 |
| Line contains a tab character. | 403 |
| Line contains a tab character. | 404 |
| Line is longer than 80 characters (found 87). | 405 |
| Line contains a tab character. | 405 |
| Line is longer than 80 characters (found 92). | 406 |
| Line contains a tab character. | 406 |
| Line contains a tab character. | 407 |
| Line contains a tab character. | 408 |
| Line contains a tab character. | 409 |
| Line is longer than 80 characters (found 87). | 410 |
| Line contains a tab character. | 410 |
| Line is longer than 80 characters (found 92). | 411 |
| Line contains a tab character. | 411 |
| Line contains a tab character. | 412 |
| Line contains a tab character. | 413 |
| Line contains a tab character. | 414 |
| Line contains a tab character. | 415 |
| Line is longer than 80 characters (found 104). | 416 |
| Line contains a tab character. | 416 |
| Line is longer than 80 characters (found 81). | 417 |
| Line contains a tab character. | 417 |
| Line is longer than 80 characters (found 81). | 418 |
| Line contains a tab character. | 418 |
| Line is longer than 80 characters (found 85). | 419 |
| Line contains a tab character. | 419 |
| Line is longer than 80 characters (found 92). | 420 |
| Line contains a tab character. | 420 |
| Line is longer than 80 characters (found 100). | 421 |
| Line contains a tab character. | 421 |
| Line contains a tab character. | 422 |
| Line contains a tab character. | 423 |
| Line contains a tab character. | 424 |
| Line contains a tab character. | 425 |
| Line contains a tab character. | 426 |
| Line is longer than 80 characters (found 95). | 427 |
| Line contains a tab character. | 427 |
| Line is longer than 80 characters (found 100). | 428 |
| Line contains a tab character. | 428 |
| Line contains a tab character. | 429 |
| Line is longer than 80 characters (found 88). | 430 |
| Line contains a tab character. | 430 |
| Line contains a tab character. | 431 |
| Line contains a tab character. | 432 |
| Line contains a tab character. | 433 |
| Line contains a tab character. | 434 |
| Line contains a tab character. | 435 |
| Line contains a tab character. | 436 |
| Missing a Javadoc comment. | 438 |
| Line contains a tab character. | 438 |
| Line contains a tab character. | 439 |
| Missing a Javadoc comment. | 439 |
| Line contains a tab character. | 440 |
| Missing a Javadoc comment. | 440 |
| Line is longer than 80 characters (found 86). | 442 |
| Line contains a tab character. | 442 |
| Missing a Javadoc comment. | 442 |
| Parameter ec should be final. | 442 |
| 'ec' hides a field. | 442 |
| Parameter status should be final. | 442 |
| 'status' hides a field. | 442 |
| Line contains a tab character. | 443 |
| Line contains a tab character. | 444 |
| Line contains a tab character. | 445 |
| Line contains a tab character. | 447 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 447 |
| Missing a Javadoc comment. | 447 |
| Parameter o should be final. | 447 |
| 'if' construct must use '{}'s. | 448 |
| Line contains a tab character. | 448 |
| Line contains a tab character. | 449 |
| 'if' construct must use '{}'s. | 450 |
| Line contains a tab character. | 450 |
| Line contains a tab character. | 451 |
| Line is longer than 80 characters (found 128). | 453 |
| Line contains a tab character. | 453 |
| 'if' construct must use '{}'s. | 455 |
| Line contains a tab character. | 455 |
| Avoid inline conditionals. | 455 |
| Line contains a tab character. | 456 |
| Line contains a tab character. | 457 |
| 'if' construct must use '{}'s. | 458 |
| Line is longer than 80 characters (found 87). | 458 |
| Line contains a tab character. | 458 |
| Avoid inline conditionals. | 458 |
| Line contains a tab character. | 459 |
| Line contains a tab character. | 460 |
| Line contains a tab character. | 462 |
| Line contains a tab character. | 463 |
| Line contains a tab character. | 465 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 465 |
| Missing a Javadoc comment. | 465 |
| Line contains a tab character. | 466 |
| Line contains a tab character. | 467 |
| Avoid inline conditionals. | 467 |
| Line is longer than 80 characters (found 88). | 468 |
| Line contains a tab character. | 468 |
| '29' is a magic number. | 468 |
| Avoid inline conditionals. | 468 |
| Line contains a tab character. | 469 |
| Line contains a tab character. | 470 |
| Line contains a tab character. | 472 |
| Method 'toString' is not designed for extension - needs to be abstract, final or empty. | 472 |
| Missing a Javadoc comment. | 472 |
| Line contains a tab character. | 473 |
| Line contains a tab character. | 474 |
| Line contains a tab character. | 475 |
| Line contains a tab character. | 476 |
| Line contains a tab character. | 477 |
| Line contains a tab character. | 478 |
| Line contains a tab character. | 479 |
| Line contains a tab character. | 480 |
| Line contains a tab character. | 481 |
| Line contains a tab character. | 482 |
| Violation | Message | Line |
|---|---|---|
| Line has trailing spaces. | 18 |
| Line is longer than 80 characters (found 84). | 24 |
| Line contains a tab character. | 24 |
| Missing a Javadoc comment. | 24 |
| First sentence should end with a period. | 26 |
| Line contains a tab character. | 26 |
| Line contains a tab character. | 27 |
| Line has trailing spaces. | 28 |
| Line contains a tab character. | 28 |
| Line contains a tab character. | 29 |
| Line contains a tab character. | 30 |
| Line contains a tab character. | 31 |
| Line contains a tab character. | 32 |
| Method 'process' is not designed for extension - needs to be abstract, final or empty. | 32 |
| Expected @throws tag for 'ServletException'. | 32 |
| Expected @throws tag for 'IOException'. | 32 |
| Line contains a tab character. | 33 |
| Line contains a tab character. | 35 |
| Line contains a tab character. | 36 |
| Line contains a tab character. | 37 |
| Line contains a tab character. | 38 |
| Line contains a tab character. | 39 |
| Line contains a tab character. | 40 |
| Line contains a tab character. | 41 |
| Line contains a tab character. | 42 |
| Line contains a tab character. | 43 |
| Line contains a tab character. | 44 |
| Line is longer than 80 characters (found 96). | 45 |
| Line contains a tab character. | 45 |
| Line is longer than 80 characters (found 98). | 46 |
| Line contains a tab character. | 46 |
| Line is longer than 80 characters (found 85). | 47 |
| Line contains a tab character. | 47 |
| Line contains a tab character. | 48 |
| Line contains a tab character. | 49 |
| Line contains a tab character. | 50 |
| Line contains a tab character. | 51 |
| Line contains a tab character. | 52 |
| Line is longer than 80 characters (found 130). | 53 |
| Line contains a tab character. | 53 |
| Line contains a tab character. | 54 |
| Line contains a tab character. | 55 |
| Line contains a tab character. | 56 |
| Line contains a tab character. | 57 |
| Line contains a tab character. | 59 |
| Line contains a tab character. | 61 |
| Line is longer than 80 characters (found 83). | 62 |
| Line contains a tab character. | 62 |
| Line contains a tab character. | 63 |
| Line has trailing spaces. | 64 |
| Line contains a tab character. | 64 |
| Line contains a tab character. | 65 |
| Line contains a tab character. | 66 |
| Line contains a tab character. | 67 |
| Line contains a tab character. | 68 |
| Line contains a tab character. | 69 |
| Method 'findEnzymeEntry' is not designed for extension - needs to be abstract, final or empty. | 69 |
| Parameter id should be final. | 69 |
| Line contains a tab character. | 70 |
| Line is longer than 80 characters (found 86). | 72 |
| Line contains a tab character. | 72 |
| Line contains a tab character. | 73 |
| Line is longer than 80 characters (found 85). | 74 |
| Line contains a tab character. | 74 |
| Line contains a tab character. | 75 |
| Line contains a tab character. | 77 |
| Line contains a tab character. | 78 |
| Line contains a tab character. | 79 |
| Line contains a tab character. | 80 |
| Line contains a tab character. | 81 |
| Line is longer than 80 characters (found 82). | 82 |
| Line contains a tab character. | 82 |
| Line contains a tab character. | 83 |
| Line contains a tab character. | 84 |
| Line contains a tab character. | 85 |
| Line contains a tab character. | 86 |
| Line is longer than 80 characters (found 87). | 87 |
| Line contains a tab character. | 87 |
| Line is longer than 80 characters (found 92). | 88 |
| Line contains a tab character. | 88 |
| Line contains a tab character. | 89 |
| Line contains a tab character. | 90 |
| Line contains a tab character. | 91 |
| Line is longer than 80 characters (found 87). | 92 |
| Line contains a tab character. | 92 |
| Line is longer than 80 characters (found 92). | 93 |
| Line contains a tab character. | 93 |
| Line contains a tab character. | 94 |
| Line contains a tab character. | 95 |
| Line contains a tab character. | 96 |
| Line contains a tab character. | 97 |
| Line is longer than 80 characters (found 104). | 98 |
| Line contains a tab character. | 98 |
| Line is longer than 80 characters (found 81). | 99 |
| Line contains a tab character. | 99 |
| Line is longer than 80 characters (found 81). | 100 |
| Line contains a tab character. | 100 |
| Line is longer than 80 characters (found 85). | 101 |
| Line contains a tab character. | 101 |
| Line is longer than 80 characters (found 92). | 102 |
| Line contains a tab character. | 102 |
| Line is longer than 80 characters (found 100). | 103 |
| Line contains a tab character. | 103 |
| Line contains a tab character. | 104 |
| Line contains a tab character. | 105 |
| Line contains a tab character. | 106 |
| Line contains a tab character. | 107 |
| Line contains a tab character. | 108 |
| Line is longer than 80 characters (found 95). | 109 |
| Line contains a tab character. | 109 |
| Line is longer than 80 characters (found 100). | 110 |
| Line contains a tab character. | 110 |
| Line contains a tab character. | 111 |
| Line is longer than 80 characters (found 88). | 112 |
| Line contains a tab character. | 112 |
| Line contains a tab character. | 113 |
| Line contains a tab character. | 114 |
| Line contains a tab character. | 115 |
| Line contains a tab character. | 116 |
| Line contains a tab character. | 117 |
| Line contains a tab character. | 118 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 89). | 27 |
| Missing a Javadoc comment. | 27 |
| Line contains a tab character. | 29 |
| Method 'process' is not designed for extension - needs to be abstract, final or empty. | 29 |
| Line is longer than 80 characters (found 94). | 34 |
| Missing a Javadoc comment. | 40 |
| Line contains a tab character. | 43 |
| Violation | Message | Line |
|---|---|---|
| Line has trailing spaces. | 23 |
| Line contains a tab character. | 29 |
| Missing a Javadoc comment. | 29 |
| Line contains a tab character. | 30 |
| First sentence should end with a period. | 32 |
| Line contains a tab character. | 32 |
| Line contains a tab character. | 33 |
| Line has trailing spaces. | 34 |
| Line contains a tab character. | 34 |
| Line contains a tab character. | 35 |
| Line contains a tab character. | 36 |
| Line contains a tab character. | 37 |
| Line contains a tab character. | 38 |
| Method 'process' is not designed for extension - needs to be abstract, final or empty. | 38 |
| Expected @throws tag for 'ServletException'. | 38 |
| Expected @throws tag for 'IOException'. | 38 |
| Line contains a tab character. | 39 |
| Line contains a tab character. | 41 |
| Line contains a tab character. | 42 |
| Line contains a tab character. | 43 |
| Line contains a tab character. | 44 |
| Line is longer than 80 characters (found 119). | 45 |
| Line contains a tab character. | 45 |
| Line contains a tab character. | 46 |
| Line contains a tab character. | 47 |
| Line contains a tab character. | 48 |
| Line contains a tab character. | 49 |
| Line is longer than 80 characters (found 84). | 50 |
| Line contains a tab character. | 50 |
| Line contains a tab character. | 51 |
| Line contains a tab character. | 52 |
| Line contains a tab character. | 53 |
| Line contains a tab character. | 54 |
| Line contains a tab character. | 55 |
| Line contains a tab character. | 56 |
| Line contains a tab character. | 57 |
| Line contains a tab character. | 58 |
| Line is longer than 80 characters (found 104). | 59 |
| Line contains a tab character. | 59 |
| Line is longer than 80 characters (found 82). | 60 |
| Line contains a tab character. | 60 |
| Line contains a tab character. | 61 |
| Line contains a tab character. | 62 |
| Line contains a tab character. | 63 |
| Line contains a tab character. | 64 |
| Line contains a tab character. | 66 |
| Line contains a tab character. | 68 |
| Line contains a tab character. | 69 |
| Line contains a tab character. | 70 |
| Line is longer than 80 characters (found 81). | 71 |
| Line contains a tab character. | 71 |
| Line contains a tab character. | 72 |
| Line has trailing spaces. | 73 |
| Line contains a tab character. | 73 |
| Line contains a tab character. | 74 |
| Line contains a tab character. | 75 |
| Line contains a tab character. | 76 |
| Line contains a tab character. | 77 |
| Line is longer than 80 characters (found 86). | 78 |
| Line contains a tab character. | 78 |
| Line contains a tab character. | 79 |
| Line contains a tab character. | 80 |
| Line contains a tab character. | 81 |
| Line contains a tab character. | 83 |
| Line contains a tab character. | 84 |
| Line is longer than 80 characters (found 87). | 85 |
| Line contains a tab character. | 85 |
| Line contains a tab character. | 86 |
| Line is longer than 80 characters (found 95). | 87 |
| Line contains a tab character. | 87 |
| Line contains a tab character. | 88 |
| Line contains a tab character. | 89 |
| Line contains a tab character. | 90 |
| Line is longer than 80 characters (found 104). | 91 |
| Line contains a tab character. | 91 |
| Line is longer than 80 characters (found 81). | 92 |
| Line contains a tab character. | 92 |
| Line is longer than 80 characters (found 81). | 93 |
| Line contains a tab character. | 93 |
| Line is longer than 80 characters (found 85). | 94 |
| Line contains a tab character. | 94 |
| Line is longer than 80 characters (found 92). | 95 |
| Line contains a tab character. | 95 |
| Line is longer than 80 characters (found 100). | 96 |
| Line contains a tab character. | 96 |
| Line contains a tab character. | 97 |
| Line contains a tab character. | 98 |
| Line contains a tab character. | 99 |
| Line contains a tab character. | 100 |
| Line is longer than 80 characters (found 87). | 101 |
| Line contains a tab character. | 101 |
| Line is longer than 80 characters (found 92). | 102 |
| Line contains a tab character. | 102 |
| Line contains a tab character. | 103 |
| Line contains a tab character. | 104 |
| Line contains a tab character. | 105 |
| Line contains a tab character. | 106 |
| Line contains a tab character. | 107 |
| Line contains a tab character. | 109 |
| Line contains a tab character. | 110 |
| Line contains a tab character. | 112 |
| Line contains a tab character. | 113 |
| Line has trailing spaces. | 114 |
| Line contains a tab character. | 114 |
| Line contains a tab character. | 115 |
| Line contains a tab character. | 116 |
| Line contains a tab character. | 117 |
| Line contains a tab character. | 118 |
| Line contains a tab character. | 119 |
| Parameter id should be final. | 119 |
| Line contains a tab character. | 120 |
| Line is longer than 80 characters (found 86). | 121 |
| Line contains a tab character. | 121 |
| Line contains a tab character. | 122 |
| Line is longer than 80 characters (found 93). | 123 |
| Line contains a tab character. | 123 |
| Line contains a tab character. | 124 |
| Line contains a tab character. | 126 |
| Line contains a tab character. | 127 |
| Line contains a tab character. | 128 |
| Line contains a tab character. | 129 |
| Line contains a tab character. | 130 |
| Line is longer than 80 characters (found 82). | 131 |
| Line contains a tab character. | 131 |
| Line contains a tab character. | 132 |
| Line contains a tab character. | 133 |
| Line contains a tab character. | 134 |
| Line contains a tab character. | 135 |
| Line is longer than 80 characters (found 87). | 136 |
| Line contains a tab character. | 136 |
| Line is longer than 80 characters (found 92). | 137 |
| Line contains a tab character. | 137 |
| Line contains a tab character. | 138 |
| Line contains a tab character. | 139 |
| Line contains a tab character. | 140 |
| Line is longer than 80 characters (found 87). | 141 |
| Line contains a tab character. | 141 |
| Line is longer than 80 characters (found 92). | 142 |
| Line contains a tab character. | 142 |
| Line contains a tab character. | 143 |
| Line contains a tab character. | 144 |
| Line contains a tab character. | 145 |
| Line contains a tab character. | 146 |
| Line is longer than 80 characters (found 104). | 147 |
| Line contains a tab character. | 147 |
| Line is longer than 80 characters (found 81). | 148 |
| Line contains a tab character. | 148 |
| Line is longer than 80 characters (found 81). | 149 |
| Line contains a tab character. | 149 |
| Line is longer than 80 characters (found 85). | 150 |
| Line contains a tab character. | 150 |
| Line is longer than 80 characters (found 92). | 151 |
| Line contains a tab character. | 151 |
| Line is longer than 80 characters (found 100). | 152 |
| Line contains a tab character. | 152 |
| Line contains a tab character. | 153 |
| Line contains a tab character. | 154 |
| Line contains a tab character. | 155 |
| Line contains a tab character. | 156 |
| Line contains a tab character. | 157 |
| Line is longer than 80 characters (found 95). | 158 |
| Line contains a tab character. | 158 |
| Line is longer than 80 characters (found 100). | 159 |
| Line contains a tab character. | 159 |
| Line contains a tab character. | 160 |
| Line is longer than 80 characters (found 88). | 161 |
| Line contains a tab character. | 161 |
| Line contains a tab character. | 162 |
| Line contains a tab character. | 163 |
| Line contains a tab character. | 164 |
| Line contains a tab character. | 165 |
| Line contains a tab character. | 166 |
| Line contains a tab character. | 167 |
| Violation | Message | Line |
|---|---|---|
| Line contains a tab character. | 23 |
| Missing a Javadoc comment. | 23 |
| Name 'LOGGER' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 23 |
| Line is longer than 80 characters (found 81). | 25 |
| Method 'service' is not designed for extension - needs to be abstract, final or empty. | 25 |
| Missing a Javadoc comment. | 25 |
| Parameter request should be final. | 25 |
| Parameter response should be final. | 25 |
| '{' is not preceded with whitespace. | 42 |
| 'if' construct must use '{}'s. | 49 |
| Violation | Message | Line |
|---|---|---|
| Method 'process' is not designed for extension - needs to be abstract, final or empty. | 23 |
| Expected @throws tag for 'ServletException'. | 23 |
| Expected @throws tag for 'IOException'. | 23 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 92). | 8 |
| Missing a Javadoc comment. | 15 |
| Line is longer than 80 characters (found 101). | 18 |
| Parameter message should be final. | 23 |
| Parameter sqlException should be final. | 23 |
| 'sqlException' hides a field. | 23 |
| Missing a Javadoc comment. | 28 |
| Parameter message should be final. | 28 |
| Parameter sqlException should be final. | 38 |
| 'sqlException' hides a field. | 38 |
| Line is longer than 80 characters (found 82). | 39 |
| '+' should be on a new line. | 39 |
| Line is longer than 80 characters (found 89). | 40 |
| '+' should be on a new line. | 40 |
| Line is longer than 80 characters (found 100). | 41 |
| Method 'getSqlExceptionMessage' is not designed for extension - needs to be abstract, final or empty. | 52 |
| Violation | Message | Line |
|---|---|---|
| Line has trailing spaces. | 3 |
| Line is longer than 80 characters (found 95). | 4 |
| Missing a Javadoc comment. | 10 |
| Missing a Javadoc comment. | 13 |
| Parameter message should be final. | 13 |
| Violation | Message | Line |
|---|---|---|
| Line has trailing spaces. | 3 |
| Line is longer than 80 characters (found 90). | 4 |
| Missing a Javadoc comment. | 10 |
| Missing a Javadoc comment. | 13 |
| Parameter message should be final. | 13 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 111). | 6 |
| Comment matches to-do format 'TODO:'. | 8 |
| Missing a Javadoc comment. | 14 |
| Missing a Javadoc comment. | 17 |
| Parameter message should be final. | 17 |
| Violation | Message | Line |
|---|---|---|
| Class EnzymeClassHelper should be declared as final. | 17 |
| Line is longer than 80 characters (found 83). | 19 |
| Missing a Javadoc comment. | 21 |
| Line is longer than 80 characters (found 93). | 24 |
| Missing a Javadoc comment. | 24 |
| Parameter enzymeClass should be final. | 24 |
| Parameter encoding should be final. | 24 |
| Line contains a tab character. | 25 |
| Parameter encodingType should be final. | 25 |
| 'if' construct must use '{}'s. | 26 |
| Line contains a tab character. | 29 |
| Line is longer than 80 characters (found 109). | 30 |
| Line contains a tab character. | 30 |
| Line contains a tab character. | 31 |
| Line contains a tab character. | 32 |
| Line contains a tab character. | 33 |
| Line is longer than 80 characters (found 126). | 36 |
| Missing a Javadoc comment. | 36 |
| Parameter enzymeClass should be final. | 36 |
| Parameter encoding should be final. | 36 |
| Parameter encodingType should be final. | 36 |
| Line is longer than 80 characters (found 104). | 41 |
| Line is longer than 80 characters (found 92). | 43 |
| Line is longer than 80 characters (found 119). | 49 |
| Line is longer than 80 characters (found 124). | 50 |
| Line is longer than 80 characters (found 121). | 51 |
| Line is longer than 80 characters (found 115). | 52 |
| Line is longer than 80 characters (found 95). | 56 |
| Line is longer than 80 characters (found 90). | 57 |
| Line is longer than 80 characters (found 97). | 61 |
| Line is longer than 80 characters (found 91). | 65 |
| Line is longer than 80 characters (found 115). | 66 |
| Line is longer than 80 characters (found 109). | 67 |
| Line is longer than 80 characters (found 128). | 71 |
| Line is longer than 80 characters (found 126). | 72 |
| Line is longer than 80 characters (found 87). | 80 |
| Line is longer than 80 characters (found 101). | 82 |
| Violation | Message | Line |
|---|---|---|
| Class EnzymeEntryHelper should be declared as final. | 49 |
| Line is longer than 80 characters (found 81). | 51 |
| Missing a Javadoc comment. | 51 |
| Missing a Javadoc comment. | 53 |
| Line is longer than 80 characters (found 109). | 55 |
| Missing a Javadoc comment. | 55 |
| Parameter enzymeEntry should be final. | 55 |
| Parameter encoding should be final. | 55 |
| Parameter encodingType should be final. | 55 |
| Parameter view should be final. | 56 |
| Line is longer than 80 characters (found 107). | 57 |
| Parameter enzymeEntry should be final. | 73 |
| Expected @param tag for 'enzymeEntry'. | 73 |
| Line is longer than 80 characters (found 97). | 74 |
| Line contains a tab character. | 74 |
| Parameter encoding should be final. | 74 |
| Expected @param tag for 'encoding'. | 74 |
| Parameter encodingType should be final. | 74 |
| Expected @param tag for 'encodingType'. | 74 |
| Parameter view should be final. | 74 |
| Expected @param tag for 'view'. | 74 |
| Expected @throws tag for 'SPTRException'. | 75 |
| Line is longer than 80 characters (found 93). | 77 |
| Line contains a tab character. | 83 |
| Line contains a tab character. | 84 |
| Line contains a tab character. | 85 |
| '{' is not preceded with whitespace. | 89 |
| '{' is not preceded with whitespace. | 91 |
| Line is longer than 80 characters (found 96). | 92 |
| Line contains a tab character. | 92 |
| '{' is not preceded with whitespace. | 92 |
| Line is longer than 80 characters (found 108). | 93 |
| Line contains a tab character. | 93 |
| Line contains a tab character. | 94 |
| Line contains a tab character. | 95 |
| '}' should be on the same line. | 95 |
| Line contains a tab character. | 96 |
| Line contains a tab character. | 97 |
| Line is longer than 80 characters (found 133). | 98 |
| Line contains a tab character. | 98 |
| Line contains a tab character. | 99 |
| Line is longer than 80 characters (found 94). | 100 |
| Line contains a tab character. | 100 |
| Line contains a tab character. | 101 |
| 'if' construct must use '{}'s. | 107 |
| Line is longer than 80 characters (found 107). | 108 |
| '==' should be on a new line. | 108 |
| Line is longer than 80 characters (found 127). | 109 |
| '{' is not preceded with whitespace. | 110 |
| Line is longer than 80 characters (found 81). | 112 |
| Line is longer than 80 characters (found 108). | 118 |
| Missing a Javadoc comment. | 118 |
| Parameter enzymeEntry should be final. | 118 |
| Parameter latestHistoryEvent should be final. | 118 |
| Line is longer than 80 characters (found 101). | 119 |
| Parameter encoding should be final. | 119 |
| Parameter isIubmbView should be final. | 119 |
| Line is longer than 80 characters (found 86). | 122 |
| Line contains a tab character. | 122 |
| '{' is not preceded with whitespace. | 122 |
| Line contains a tab character. | 123 |
| Line contains a tab character. | 124 |
| Line is longer than 80 characters (found 86). | 127 |
| Line contains a tab character. | 128 |
| 'if' construct must use '{}'s. | 129 |
| Line contains a tab character. | 130 |
| 'else' construct must use '{}'s. | 131 |
| Line contains a tab character. | 132 |
| Line is longer than 80 characters (found 90). | 134 |
| Line is longer than 80 characters (found 83). | 135 |
| Line contains a tab character. | 135 |
| Line is longer than 80 characters (found 85). | 137 |
| Line contains a tab character. | 139 |
| 'if' construct must use '{}'s. | 144 |
| 'if' construct must use '{}'s. | 146 |
| Line is longer than 80 characters (found 85). | 149 |
| Line is longer than 80 characters (found 116). | 150 |
| Line is longer than 80 characters (found 92). | 155 |
| Line is longer than 80 characters (found 102). | 156 |
| 'if' construct must use '{}'s. | 157 |
| Line is longer than 80 characters (found 84). | 157 |
| '{' is not preceded with whitespace. | 160 |
| Line contains a tab character. | 161 |
| Line is longer than 80 characters (found 139). | 162 |
| Line contains a tab character. | 162 |
| Line contains a tab character. | 163 |
| Line is longer than 80 characters (found 125). | 170 |
| Missing a Javadoc comment. | 177 |
| Parameter ecString should be final. | 177 |
| Line is longer than 80 characters (found 93). | 190 |
| Parameter enzymeEntry should be final. | 190 |
| Expected @param tag for 'enzymeEntry'. | 190 |
| Parameter encoding should be final. | 190 |
| Expected @param tag for 'encoding'. | 190 |
| Line is longer than 80 characters (found 92). | 191 |
| Parameter encodingType should be final. | 191 |
| Expected @param tag for 'encodingType'. | 191 |
| Parameter view should be final. | 191 |
| Expected @param tag for 'view'. | 191 |
| Expected @throws tag for 'SPTRException'. | 192 |
| Line is longer than 80 characters (found 116). | 207 |
| Line contains a tab character. | 216 |
| 'if' construct must use '{}'s. | 217 |
| Line contains a tab character. | 218 |
| 'if' construct must use '{}'s. | 219 |
| Line contains a tab character. | 220 |
| 'else' construct must use '{}'s. | 221 |
| Line contains a tab character. | 223 |
| Line is longer than 80 characters (found 87). | 226 |
| Line contains a tab character. | 226 |
| Missing a Javadoc comment. | 226 |
| Parameter entry should be final. | 226 |
| Parameter view should be final. | 226 |
| '{' is not preceded with whitespace. | 226 |
| Line contains a tab character. | 227 |
| Line contains a tab character. | 228 |
| Line contains a tab character. | 229 |
| Line contains a tab character. | 230 |
| Line contains a tab character. | 231 |
| Line contains a tab character. | 232 |
| Line contains a tab character. | 234 |
| Line contains a tab character. | 235 |
| Line is longer than 80 characters (found 105). | 237 |
| Missing a Javadoc comment. | 237 |
| Parameter entry should be final. | 237 |
| Parameter view should be final. | 237 |
| Parameter tabView should be final. | 237 |
| '{' is not preceded with whitespace. | 237 |
| Line contains a tab character. | 238 |
| Line contains a tab character. | 239 |
| '?' is not preceded with whitespace. | 239 |
| '?' should be on a new line. | 239 |
| Avoid inline conditionals. | 239 |
| Line is longer than 80 characters (found 112). | 240 |
| Line contains a tab character. | 240 |
| '+' is not preceded with whitespace. | 240 |
| '+' is not followed by whitespace. | 240 |
| '+' is not preceded with whitespace. | 240 |
| '+' is not followed by whitespace. | 240 |
| '+' is not preceded with whitespace. | 240 |
| '+' is not followed by whitespace. | 240 |
| '+' is not preceded with whitespace. | 240 |
| '+' is not followed by whitespace. | 240 |
| Line contains a tab character. | 241 |
| '?' is not preceded with whitespace. | 241 |
| '?' should be on a new line. | 241 |
| Avoid inline conditionals. | 241 |
| Line contains a tab character. | 242 |
| Line contains a tab character. | 243 |
| '?' is not preceded with whitespace. | 243 |
| '?' should be on a new line. | 243 |
| Avoid inline conditionals. | 243 |
| Line contains a tab character. | 244 |
| '+' is not preceded with whitespace. | 244 |
| '+' is not followed by whitespace. | 244 |
| Line contains a tab character. | 245 |
| '?' is not preceded with whitespace. | 245 |
| '?' should be on a new line. | 245 |
| Avoid inline conditionals. | 245 |
| Line is longer than 80 characters (found 116). | 246 |
| Line contains a tab character. | 246 |
| '+' is not preceded with whitespace. | 246 |
| '+' is not followed by whitespace. | 246 |
| '+' is not preceded with whitespace. | 246 |
| '+' is not followed by whitespace. | 246 |
| '+' is not preceded with whitespace. | 246 |
| '+' is not followed by whitespace. | 246 |
| '+' is not preceded with whitespace. | 246 |
| '+' is not followed by whitespace. | 246 |
| Line contains a tab character. | 247 |
| '?' is not preceded with whitespace. | 247 |
| '?' should be on a new line. | 247 |
| Avoid inline conditionals. | 247 |
| Line contains a tab character. | 248 |
| Line is longer than 80 characters (found 83). | 249 |
| Line contains a tab character. | 249 |
| Line contains a tab character. | 250 |
| Line contains a tab character. | 251 |
| Line contains a tab character. | 252 |
| Line contains a tab character. | 253 |
| Line is longer than 80 characters (found 118). | 257 |
| Missing a Javadoc comment. | 257 |
| Parameter enzymeEntry should be final. | 257 |
| Parameter encoding should be final. | 257 |
| Parameter encodingType should be final. | 257 |
| Line is longer than 80 characters (found 108). | 271 |
| Line contains a tab character. | 282 |
| Line is longer than 80 characters (found 108). | 283 |
| Line contains a tab character. | 283 |
| Line contains a tab character. | 284 |
| Line contains a tab character. | 286 |
| Line contains a tab character. | 287 |
| Line contains a tab character. | 288 |
| '{' is not preceded with whitespace. | 288 |
| Line contains a tab character. | 289 |
| 'if' construct must use '{}'s. | 290 |
| Line is longer than 80 characters (found 119). | 290 |
| Line contains a tab character. | 290 |
| Line is longer than 80 characters (found 84). | 291 |
| Line contains a tab character. | 291 |
| '+' is not preceded with whitespace. | 291 |
| '+' is not followed by whitespace. | 291 |
| '-' is not preceded with whitespace. | 291 |
| '-' is not followed by whitespace. | 291 |
| 'else' construct must use '{}'s. | 292 |
| Line contains a tab character. | 292 |
| Line is longer than 80 characters (found 124). | 293 |
| Line contains a tab character. | 293 |
| 'if' construct must use '{}'s. | 294 |
| Line contains a tab character. | 294 |
| '-' is not preceded with whitespace. | 294 |
| '-' is not followed by whitespace. | 294 |
| Line contains a tab character. | 295 |
| Line contains a tab character. | 296 |
| Line contains a tab character. | 297 |
| Line contains a tab character. | 299 |
| Line contains a tab character. | 300 |
| '{' is not preceded with whitespace. | 300 |
| Line is longer than 80 characters (found 87). | 301 |
| Line contains a tab character. | 301 |
| Line contains a tab character. | 302 |
| Line contains a tab character. | 303 |
| Line is longer than 80 characters (found 89). | 304 |
| Line contains a tab character. | 304 |
| 'if' construct must use '{}'s. | 305 |
| Line is longer than 80 characters (found 93). | 305 |
| Line contains a tab character. | 305 |
| Line contains a tab character. | 306 |
| 'if' construct must use '{}'s. | 307 |
| Line is longer than 80 characters (found 91). | 307 |
| Line contains a tab character. | 307 |
| Line contains a tab character. | 308 |
| 'if' construct must use '{}'s. | 309 |
| Line is longer than 80 characters (found 92). | 309 |
| Line contains a tab character. | 309 |
| Line contains a tab character. | 310 |
| 'if' construct must use '{}'s. | 311 |
| Line contains a tab character. | 311 |
| Line contains a tab character. | 312 |
| Line contains a tab character. | 313 |
| Line contains a tab character. | 314 |
| Line contains a tab character. | 316 |
| '&&' should be on a new line. | 316 |
| Line is longer than 80 characters (found 113). | 317 |
| Line contains a tab character. | 317 |
| Line is longer than 80 characters (found 88). | 318 |
| Line contains a tab character. | 318 |
| Line is longer than 80 characters (found 96). | 319 |
| Line contains a tab character. | 319 |
| Line contains a tab character. | 320 |
| Line contains a tab character. | 321 |
| Line contains a tab character. | 323 |
| Line contains a tab character. | 324 |
| '{' is not preceded with whitespace. | 324 |
| Line is longer than 80 characters (found 82). | 325 |
| Line contains a tab character. | 325 |
| Line contains a tab character. | 326 |
| '{' is not preceded with whitespace. | 326 |
| Line contains a tab character. | 327 |
| Line contains a tab character. | 328 |
| Line is longer than 80 characters (found 118). | 329 |
| Line contains a tab character. | 329 |
| 'if' construct must use '{}'s. | 330 |
| Line contains a tab character. | 330 |
| Line contains a tab character. | 331 |
| Line contains a tab character. | 332 |
| Line contains a tab character. | 333 |
| Line contains a tab character. | 335 |
| Line contains a tab character. | 336 |
| Line is longer than 80 characters (found 97). | 337 |
| Line contains a tab character. | 337 |
| Line is longer than 80 characters (found 124). | 338 |
| Line contains a tab character. | 338 |
| Line contains a tab character. | 339 |
| Line contains a tab character. | 340 |
| Line contains a tab character. | 342 |
| Line contains a tab character. | 343 |
| Line contains a tab character. | 344 |
| '{' is not preceded with whitespace. | 344 |
| Line contains a tab character. | 345 |
| Line contains a tab character. | 346 |
| '+' is not preceded with whitespace. | 346 |
| '+' is not followed by whitespace. | 346 |
| Line contains a tab character. | 347 |
| 'if' construct must use '{}'s. | 348 |
| Line contains a tab character. | 348 |
| Line contains a tab character. | 349 |
| Line contains a tab character. | 350 |
| Line contains a tab character. | 352 |
| Line contains a tab character. | 353 |
| Line contains a tab character. | 354 |
| Missing a Javadoc comment. | 359 |
| Parameter comments should be final. | 359 |
| 'if' construct must use '{}'s. | 363 |
| 'if' is not followed by whitespace. | 363 |
| Missing a Javadoc comment. | 368 |
| Parameter synonyms should be final. | 368 |
| 'if' construct must use '{}'s. | 372 |
| 'if' is not followed by whitespace. | 372 |
| Line is longer than 80 characters (found 81). | 377 |
| Missing a Javadoc comment. | 377 |
| Parameter reactions should be final. | 377 |
| '{' is not preceded with whitespace. | 379 |
| Line contains a tab character. | 381 |
| 'if' construct must use '{}'s. | 382 |
| Line is longer than 80 characters (found 110). | 382 |
| Line contains a tab character. | 382 |
| Line contains a tab character. | 383 |
| Line contains a tab character. | 384 |
| 'if' construct must use '{}'s. | 385 |
| Line is longer than 80 characters (found 87). | 385 |
| Missing a Javadoc comment. | 390 |
| Parameter links should be final. | 390 |
| 'if' construct must use '{}'s. | 394 |
| 'if' is not followed by whitespace. | 394 |
| Line is longer than 80 characters (found 113). | 403 |
| Missing a Javadoc comment. | 403 |
| Parameter enzymeEntry should be final. | 403 |
| Parameter encoding should be final. | 403 |
| Parameter encodingType should be final. | 403 |
| Line is longer than 80 characters (found 107). | 405 |
| Line is longer than 80 characters (found 109). | 419 |
| Line contains a tab character. | 426 |
| Missing a Javadoc comment. | 426 |
| Parameter enzymeEntry should be final. | 426 |
| '{' is not preceded with whitespace. | 426 |
| Line contains a tab character. | 427 |
| Line is longer than 80 characters (found 87). | 428 |
| Line contains a tab character. | 428 |
| Line contains a tab character. | 429 |
| Line contains a tab character. | 430 |
| Line contains a tab character. | 431 |
| Line contains a tab character. | 432 |
| Line contains a tab character. | 433 |
| Line contains a tab character. | 434 |
| Line contains a tab character. | 435 |
| Line contains a tab character. | 436 |
| Line contains a tab character. | 437 |
| Line contains a tab character. | 438 |
| Line contains a tab character. | 439 |
| Line contains a tab character. | 440 |
| Line is longer than 80 characters (found 92). | 441 |
| Line contains a tab character. | 441 |
| Line contains a tab character. | 442 |
| Line contains a tab character. | 443 |
| Line is longer than 80 characters (found 91). | 444 |
| Line contains a tab character. | 444 |
| Line contains a tab character. | 445 |
| Line contains a tab character. | 446 |
| Line contains a tab character. | 447 |
| Line contains a tab character. | 448 |
| Line contains a tab character. | 449 |
| Line is longer than 80 characters (found 119). | 451 |
| Missing a Javadoc comment. | 451 |
| Parameter enzymeEntry should be final. | 451 |
| Parameter encoding should be final. | 451 |
| Parameter encodingType should be final. | 451 |
| Line is longer than 80 characters (found 84). | 454 |
| Line contains a tab character. | 454 |
| '{' is not preceded with whitespace. | 454 |
| Line contains a tab character. | 455 |
| Line contains a tab character. | 456 |
| Line is longer than 80 characters (found 86). | 459 |
| Line is longer than 80 characters (found 99). | 460 |
| Line contains a tab character. | 460 |
| Line contains a tab character. | 461 |
| Line is longer than 80 characters (found 83). | 462 |
| Line contains a tab character. | 462 |
| Line is longer than 80 characters (found 85). | 464 |
| Line contains a tab character. | 466 |
| Line is longer than 80 characters (found 101). | 471 |
| Line is longer than 80 characters (found 83). | 472 |
| 'if' construct must use '{}'s. | 475 |
| 'if' construct must use '{}'s. | 477 |
| 'if' construct must use '{}'s. | 479 |
| '&&' should be on a new line. | 479 |
| Line is longer than 80 characters (found 88). | 480 |
| Line is longer than 80 characters (found 83). | 481 |
| Line contains a tab character. | 486 |
| Line is longer than 80 characters (found 84). | 496 |
| Line is longer than 80 characters (found 85). | 510 |
| Line contains a tab character. | 521 |
| Line contains a tab character. | 522 |
| Line is longer than 80 characters (found 96). | 527 |
| Missing a Javadoc comment. | 527 |
| Parameter commonName should be final. | 527 |
| Parameter encoding should be final. | 527 |
| Line is longer than 80 characters (found 86). | 540 |
| Missing a Javadoc comment. | 540 |
| Parameter synonyms should be final. | 540 |
| Parameter encoding should be final. | 540 |
| Line is longer than 80 characters (found 90). | 552 |
| 'if' construct must use '{}'s. | 554 |
| 'if' construct must use '{}'s. | 556 |
| 'if' construct must use '{}'s. | 558 |
| 'if' construct must use '{}'s. | 560 |
| 'if' construct must use '{}'s. | 562 |
| Line is longer than 80 characters (found 104). | 570 |
| Missing a Javadoc comment. | 570 |
| Parameter systematicName should be final. | 570 |
| Parameter encoding should be final. | 570 |
| Missing a Javadoc comment. | 583 |
| Parameter reactions should be final. | 583 |
| Parameter encoding should be final. | 584 |
| Parameter encodingType should be final. | 584 |
| Line is longer than 80 characters (found 99). | 586 |
| Line is longer than 80 characters (found 99). | 588 |
| '=' is not preceded with whitespace. | 588 |
| Line contains a tab character. | 590 |
| Line is longer than 80 characters (found 111). | 591 |
| Line contains a tab character. | 591 |
| '{' is not preceded with whitespace. | 591 |
| Line contains a tab character. | 592 |
| Line contains a tab character. | 593 |
| Line contains a tab character. | 594 |
| Line contains a tab character. | 595 |
| 'if' construct must use '{}'s. | 596 |
| Line is longer than 80 characters (found 98). | 600 |
| Line contains a tab character. | 600 |
| '{' is not preceded with whitespace. | 600 |
| Line is longer than 80 characters (found 106). | 601 |
| Line contains a tab character. | 601 |
| Line is longer than 80 characters (found 85). | 602 |
| Line contains a tab character. | 602 |
| Line contains a tab character. | 604 |
| Line contains a tab character. | 605 |
| Line contains a tab character. | 606 |
| Line is longer than 80 characters (found 116). | 609 |
| Missing a Javadoc comment. | 618 |
| Parameter cofactors should be final. | 618 |
| Parameter xchars should be final. | 619 |
| Parameter encodingType should be final. | 619 |
| Line is longer than 80 characters (found 103). | 621 |
| Line is longer than 80 characters (found 99). | 631 |
| Line has trailing spaces. | 639 |
| Missing a Javadoc comment. | 640 |
| Parameter o should be final. | 640 |
| Line is longer than 80 characters (found 85). | 641 |
| Parameter xchars should be final. | 641 |
| Parameter encodingType should be final. | 641 |
| Parameter useBrakets should be final. | 641 |
| '{' is not preceded with whitespace. | 641 |
| '{' is not preceded with whitespace. | 643 |
| Line is longer than 80 characters (found 91). | 644 |
| '{' is not preceded with whitespace. | 645 |
| Line is longer than 80 characters (found 94). | 646 |
| Line has trailing spaces. | 653 |
| Missing a Javadoc comment. | 654 |
| Parameter compound should be final. | 654 |
| Parameter xchars should be final. | 655 |
| Parameter encodingType should be final. | 655 |
| '{' is not preceded with whitespace. | 655 |
| Line is longer than 80 characters (found 89). | 657 |
| '{' is not preceded with whitespace. | 659 |
| Line has trailing spaces. | 667 |
| Missing a Javadoc comment. | 668 |
| Parameter os should be final. | 668 |
| Line is longer than 80 characters (found 85). | 669 |
| Parameter xchars should be final. | 669 |
| Parameter encodingType should be final. | 669 |
| Parameter useBrakets should be final. | 669 |
| '{' is not preceded with whitespace. | 669 |
| '{' is not preceded with whitespace. | 672 |
| '{' is not preceded with whitespace. | 674 |
| Line is longer than 80 characters (found 85). | 676 |
| Line has trailing spaces. | 678 |
| '{' is not preceded with whitespace. | 680 |
| Line is longer than 80 characters (found 86). | 686 |
| Missing a Javadoc comment. | 686 |
| Parameter comments should be final. | 686 |
| Parameter encoding should be final. | 686 |
| Line is longer than 80 characters (found 99). | 688 |
| Line is longer than 80 characters (found 120). | 693 |
| Missing a Javadoc comment. | 701 |
| Parameter links should be final. | 701 |
| Parameter ec should be final. | 701 |
| Line is longer than 80 characters (found 90). | 714 |
| Missing a Javadoc comment. | 714 |
| Parameter references should be final. | 714 |
| Parameter encoding should be final. | 714 |
| Line is longer than 80 characters (found 99). | 716 |
| Line is longer than 80 characters (found 81). | 727 |
| Missing a Javadoc comment. | 735 |
| Parameter ref should be final. | 735 |
| '{' is not preceded with whitespace. | 735 |
| Line contains a tab character. | 736 |
| Line is longer than 80 characters (found 94). | 737 |
| Line contains a tab character. | 737 |
| Line is longer than 80 characters (found 90). | 738 |
| Line contains a tab character. | 738 |
| Line contains a tab character. | 739 |
| Line contains a tab character. | 740 |
| '{' is not preceded with whitespace. | 740 |
| Line contains a tab character. | 741 |
| Line is longer than 80 characters (found 86). | 742 |
| Line contains a tab character. | 742 |
| Line contains a tab character. | 743 |
| Line is longer than 80 characters (found 85). | 744 |
| Line contains a tab character. | 744 |
| Line contains a tab character. | 745 |
| '{' is not preceded with whitespace. | 745 |
| Line is longer than 80 characters (found 89). | 746 |
| Line contains a tab character. | 746 |
| Line contains a tab character. | 747 |
| Line contains a tab character. | 748 |
| '{' is not preceded with whitespace. | 748 |
| 'if' construct must use '{}'s. | 749 |
| Line contains a tab character. | 749 |
| Line contains a tab character. | 750 |
| Line contains a tab character. | 751 |
| '{' is not preceded with whitespace. | 751 |
| Line is longer than 80 characters (found 81). | 752 |
| Line contains a tab character. | 752 |
| Line contains a tab character. | 753 |
| Line contains a tab character. | 754 |
| Line contains a tab character. | 755 |
| Line contains a tab character. | 756 |
| Line is longer than 80 characters (found 119). | 757 |
| Line contains a tab character. | 757 |
| Line is longer than 80 characters (found 89). | 758 |
| Line contains a tab character. | 758 |
| Line contains a tab character. | 759 |
| Line contains a tab character. | 760 |
| Line contains a tab character. | 761 |
| Line contains a tab character. | 762 |
| Line contains a tab character. | 763 |
| Line contains a tab character. | 764 |
| '{' is not preceded with whitespace. | 764 |
| Line contains a tab character. | 765 |
| Line contains a tab character. | 766 |
| '{' is not preceded with whitespace. | 766 |
| Line contains a tab character. | 767 |
| Line contains a tab character. | 768 |
| Line contains a tab character. | 769 |
| Line contains a tab character. | 770 |
| '{' is not preceded with whitespace. | 770 |
| Line contains a tab character. | 771 |
| Line contains a tab character. | 772 |
| Line contains a tab character. | 773 |
| '{' is not preceded with whitespace. | 773 |
| Line contains a tab character. | 774 |
| Line contains a tab character. | 775 |
| Line contains a tab character. | 776 |
| '{' is not preceded with whitespace. | 776 |
| Line contains a tab character. | 777 |
| Line contains a tab character. | 778 |
| Line contains a tab character. | 779 |
| '{' is not preceded with whitespace. | 779 |
| Line contains a tab character. | 780 |
| Line contains a tab character. | 781 |
| Line contains a tab character. | 782 |
| '{' is not preceded with whitespace. | 782 |
| Line contains a tab character. | 783 |
| Line contains a tab character. | 784 |
| Line contains a tab character. | 785 |
| '{' is not preceded with whitespace. | 785 |
| Line contains a tab character. | 786 |
| Line contains a tab character. | 787 |
| Line contains a tab character. | 788 |
| '{' is not preceded with whitespace. | 788 |
| Line contains a tab character. | 789 |
| Line contains a tab character. | 790 |
| '{' is not preceded with whitespace. | 790 |
| Line contains a tab character. | 791 |
| Line contains a tab character. | 792 |
| Line contains a tab character. | 793 |
| Line contains a tab character. | 794 |
| Line contains a tab character. | 795 |
| '{' is not preceded with whitespace. | 795 |
| Line contains a tab character. | 796 |
| Line contains a tab character. | 797 |
| Line contains a tab character. | 798 |
| Line contains a tab character. | 799 |
| Line contains a tab character. | 800 |
| Missing a Javadoc comment. | 803 |
| Parameter name should be final. | 803 |
| Violation | Message | Line |
|---|---|---|
| Using the '.*' form of import should be avoided - java.util.*. | 3 |
| Class EnzymeLinkHelper should be declared as final. | 13 |
| Line is longer than 80 characters (found 83). | 15 |
| Missing a Javadoc comment. | 17 |
| Missing a Javadoc comment. | 20 |
| Parameter links should be final. | 20 |
| Parameter ec should be final. | 20 |
| Missing a Javadoc comment. | 43 |
| Parameter links should be final. | 43 |
| Parameter ec should be final. | 43 |
| Line is longer than 80 characters (found 111). | 49 |
| 'if' construct must use '{}'s. | 50 |
| 'if' construct must use '{}'s. | 53 |
| Line contains a tab character. | 55 |
| Line contains a tab character. | 56 |
| Line is longer than 80 characters (found 86). | 59 |
| Line contains a tab character. | 59 |
| '{' is not preceded with whitespace. | 59 |
| Line contains a tab character. | 60 |
| Line is longer than 80 characters (found 86). | 61 |
| '{' is not preceded with whitespace. | 61 |
| Line contains a tab character. | 62 |
| Line is longer than 80 characters (found 85). | 63 |
| '{' is not preceded with whitespace. | 63 |
| Line is longer than 80 characters (found 121). | 64 |
| Line contains a tab character. | 64 |
| Line is longer than 80 characters (found 82). | 65 |
| '{' is not preceded with whitespace. | 65 |
| Line contains a tab character. | 66 |
| Line is longer than 80 characters (found 85). | 67 |
| '{' is not preceded with whitespace. | 67 |
| Line is longer than 80 characters (found 122). | 68 |
| Line contains a tab character. | 68 |
| Line is longer than 80 characters (found 83). | 69 |
| '{' is not preceded with whitespace. | 69 |
| Line is longer than 80 characters (found 103). | 70 |
| Line contains a tab character. | 70 |
| Line is longer than 80 characters (found 82). | 71 |
| '{' is not preceded with whitespace. | 71 |
| Line is longer than 80 characters (found 125). | 72 |
| Line contains a tab character. | 72 |
| Line is longer than 80 characters (found 82). | 73 |
| '{' is not preceded with whitespace. | 73 |
| Line is longer than 80 characters (found 101). | 74 |
| Line contains a tab character. | 74 |
| Line is longer than 80 characters (found 85). | 75 |
| '{' is not preceded with whitespace. | 75 |
| Line is longer than 80 characters (found 107). | 76 |
| Line contains a tab character. | 76 |
| Line is longer than 80 characters (found 84). | 77 |
| '{' is not preceded with whitespace. | 77 |
| Line is longer than 80 characters (found 97). | 78 |
| Line contains a tab character. | 78 |
| Line is longer than 80 characters (found 85). | 79 |
| '{' is not preceded with whitespace. | 79 |
| Line is longer than 80 characters (found 81). | 80 |
| Line contains a tab character. | 80 |
| Line is longer than 80 characters (found 81). | 81 |
| '{' is not preceded with whitespace. | 81 |
| Line contains a tab character. | 82 |
| '+' is not preceded with whitespace. | 82 |
| '+' is not followed by whitespace. | 82 |
| Line is longer than 80 characters (found 83). | 83 |
| '{' is not preceded with whitespace. | 83 |
| Line is longer than 80 characters (found 126). | 84 |
| Line contains a tab character. | 84 |
| Line is longer than 80 characters (found 87). | 85 |
| '{' is not preceded with whitespace. | 85 |
| Line contains a tab character. | 86 |
| '{' is not preceded with whitespace. | 90 |
| Line contains a tab character. | 91 |
| Line is longer than 80 characters (found 86). | 92 |
| '{' is not preceded with whitespace. | 92 |
| Line contains a tab character. | 93 |
| Line contains a tab character. | 95 |
| '{' is not preceded with whitespace. | 99 |
| 'if' construct must use '{}'s. | 100 |
| 'if' construct must use '{}'s. | 102 |
| '{' is not preceded with whitespace. | 104 |
| 'if' construct must use '{}'s. | 106 |
| '{' is not preceded with whitespace. | 109 |
| Line contains a tab character. | 110 |
| Missing a Javadoc comment. | 117 |
| Parameter links should be final. | 117 |
| Parameter ec should be final. | 117 |
| 'if' construct must use '{}'s. | 119 |
| Line is longer than 80 characters (found 93). | 119 |
| Line is longer than 80 characters (found 97). | 125 |
| Line is longer than 80 characters (found 117). | 126 |
| '9' is a magic number. | 127 |
| Line is longer than 80 characters (found 161). | 129 |
| Line is longer than 80 characters (found 91). | 134 |
| '9' is a magic number. | 135 |
| 'if' construct must use '{}'s. | 144 |
| 'if' construct must use '{}'s. | 154 |
| 'if' is not followed by whitespace. | 154 |
| 'if' construct must use '{}'s. | 170 |
| '9' is a magic number. | 170 |
| Line is longer than 80 characters (found 97). | 179 |
| Missing a Javadoc comment. | 179 |
| Parameter link should be final. | 179 |
| Parameter ec should be final. | 179 |
| Parameter isNotFirstLink should be final. | 179 |
| Line is longer than 80 characters (found 81). | 185 |
| '||' should be on a new line. | 196 |
| '||' should be on a new line. | 197 |
| '||' should be on a new line. | 198 |
| Line is longer than 80 characters (found 92). | 200 |
| Line is longer than 80 characters (found 94). | 207 |
| 'if' construct must use '{}'s. | 211 |
| Line is longer than 80 characters (found 92). | 222 |
| Line is longer than 80 characters (found 92). | 227 |
| Missing a Javadoc comment. | 238 |
| Parameter links should be final. | 238 |
| 'if' construct must use '{}'s. | 242 |
| Line is longer than 80 characters (found 81). | 242 |
| Violation | Message | Line |
|---|---|---|
| Class EnzymeReactionHelper should be declared as final. | 16 |
| Line is longer than 80 characters (found 83). | 18 |
| Missing a Javadoc comment. | 20 |
| Missing a Javadoc comment. | 23 |
| Parameter reaction should be final. | 23 |
| Parameter encoding should be final. | 24 |
| Parameter encodingType should be final. | 24 |
| Line is longer than 80 characters (found 91). | 26 |
| Violation | Message | Line |
|---|---|---|
| Class EnzymeSubSubclassHelper should be declared as final. | 20 |
| Line is longer than 80 characters (found 83). | 22 |
| Missing a Javadoc comment. | 24 |
| Line is longer than 80 characters (found 134). | 27 |
| Missing a Javadoc comment. | 27 |
| Parameter enzymeSubSubclass should be final. | 27 |
| Parameter encoding should be final. | 27 |
| Parameter encodingType should be final. | 27 |
| Line is longer than 80 characters (found 124). | 28 |
| Line is longer than 80 characters (found 123). | 31 |
| Missing a Javadoc comment. | 31 |
| Parameter enzymeSubSubclass should be final. | 31 |
| Parameter encoding should be final. | 31 |
| Parameter encodingType should be final. | 31 |
| Line is longer than 80 characters (found 81). | 36 |
| Line is longer than 80 characters (found 92). | 38 |
| Line is longer than 80 characters (found 98). | 40 |
| Line is longer than 80 characters (found 92). | 44 |
| Line is longer than 80 characters (found 121). | 46 |
| Line is longer than 80 characters (found 92). | 48 |
| Line is longer than 80 characters (found 121). | 55 |
| Line is longer than 80 characters (found 126). | 56 |
| Line is longer than 80 characters (found 123). | 57 |
| Line is longer than 80 characters (found 117). | 58 |
| Line is longer than 80 characters (found 97). | 62 |
| Line is longer than 80 characters (found 104). | 63 |
| Line is longer than 80 characters (found 99). | 67 |
| Line is longer than 80 characters (found 91). | 72 |
| Line is longer than 80 characters (found 115). | 73 |
| Line is longer than 80 characters (found 109). | 74 |
| Line is longer than 80 characters (found 128). | 78 |
| Line is longer than 80 characters (found 126). | 79 |
| Line is longer than 80 characters (found 87). | 87 |
| Line is longer than 80 characters (found 101). | 89 |
| Line is longer than 80 characters (found 95). | 91 |
| Line is longer than 80 characters (found 137). | 92 |
| 'if' construct must use '{}'s. | 93 |
| 'if' construct must use '{}'s. | 96 |
| Line is longer than 80 characters (found 95). | 96 |
| Line is longer than 80 characters (found 106). | 100 |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| Class EnzymeSubclassHelper should be declared as final. | 17 |
| Line is longer than 80 characters (found 83). | 19 |
| Missing a Javadoc comment. | 21 |
| Line is longer than 80 characters (found 128). | 24 |
| Missing a Javadoc comment. | 24 |
| Parameter enzymeSubclass should be final. | 24 |
| Parameter encoding should be final. | 24 |
| Parameter encodingType should be final. | 24 |
| 'if' construct must use '{}'s. | 25 |
| Line is longer than 80 characters (found 121). | 27 |
| Line is longer than 80 characters (found 117). | 30 |
| Missing a Javadoc comment. | 30 |
| Parameter enzymeSubclass should be final. | 30 |
| Parameter encoding should be final. | 30 |
| Parameter encodingType should be final. | 30 |
| Line is longer than 80 characters (found 81). | 35 |
| Line is longer than 80 characters (found 92). | 37 |
| Line is longer than 80 characters (found 121). | 39 |
| Line is longer than 80 characters (found 92). | 41 |
| Line is longer than 80 characters (found 119). | 47 |
| Line is longer than 80 characters (found 124). | 48 |
| Line is longer than 80 characters (found 121). | 49 |
| Line is longer than 80 characters (found 115). | 50 |
| Line is longer than 80 characters (found 95). | 54 |
| Line is longer than 80 characters (found 96). | 55 |
| Line is longer than 80 characters (found 97). | 59 |
| Line is longer than 80 characters (found 91). | 63 |
| Line is longer than 80 characters (found 115). | 64 |
| Line is longer than 80 characters (found 109). | 65 |
| Line is longer than 80 characters (found 128). | 69 |
| Line is longer than 80 characters (found 126). | 70 |
| Line is longer than 80 characters (found 87). | 76 |
| Line is longer than 80 characters (found 87). | 78 |
| Line is longer than 80 characters (found 101). | 80 |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| Utility classes should not have a public or default constructor. | 19 |
| Missing a Javadoc comment. | 21 |
| Missing a Javadoc comment. | 23 |
| Missing a Javadoc comment. | 25 |
| Parameter intenzConfig should be final. | 25 |
| 'intenzConfig' hides a field. | 25 |
| Missing a Javadoc comment. | 29 |
| Parameter className should be final. | 29 |
| Parameter errorMessage should be final. | 29 |
| Parameter userName should be final. | 30 |
