IntEnz public webapp change log

Release History

VersionDateDescription
71.0.92014-06-26Dependency updates (new Rhea data model)
71.0.82014-03-07Updated dependency
71.0.72013-10-17Locations in transport reactions
71.0.62013-09-12Refactored configuration; updates
71.0.52013-06-05Database links fixed, added and sorted.
71.0.42013-05-28Removed ERGO links
71.0.32013-04-26Fixed ajax URL
71.0.22013-04-22Dependencies update
71.0.12013-03-12Dependencies update
71.0.02013-02-26Frontier
70.1.02012-12-03IUBMB flag
70.0.52012-09-07Updated dependencies
70.0.42012-08-08Health filter added
70.0.32012-07-27Updated dependencies
70.0.22012-01-20Dependency updates
70.0.12011-08-11Fixed MBean behaviour
70.0.02011-06-22Webapp independent of data
69.0.02011-05-24Release 69
68.0.02011-03-17Release 68
67.0.02011-02-15Release 67
652010-12-09Release 65
64.0.12010-12-01Bug fix
642010-11-11Release 64
632010-10-13Release 63
622010-09-15Release 62 (first at pH 7.3)
612010-06-09Release 61
602010-05-11Release 60
592010-04-15Release 59
582010-03-10Release 58
572010-02-08Release 57
562010-01-11Release 56
552009-12-04Release 55
542009-11-05Release 54
532009-10-08Release 53
522009-08-27Release 52
512009-08-05Fixed problem with cofactors
502009-06-25Release 50
49.12009-06-10Fixed PDBe (MSD) images URLs
492009-05-11Release 49
482009-03-12Release 48
472009-01-28Release 47
462008-12-10Release 46
452008-11-06Release 45
442008-09-25Release 44
432008-08-20Release 43
422008-07-07Release 42
412008-06-05Release 41
402008-05-01Release 40
39.0.12008-04-09Bugfix
39.02008-03-31Release 39
38.02008-02-18Release 38

Release 71.0.9 - 2014-06-26

TypeChangesBy

update

Updated to latest versions of intenz-core, intenz-mapper, intenz-ffwriter, intenz-database, rhea-domain, rhea-taglib and biobabel-core.rafalcan

Release 71.0.8 - 2014-03-07

TypeChangesBy

update

Updated to latest version of intenz-ffwriter.rafalcan

Release 71.0.7 - 2013-10-17

TypeChangesBy

fix

Added dependency on rhea-taglib, which will be reused here to avoid duplication of code. This shows compound locations in transport reactions. Fixes 220.rafalcan

fix

Added prevailing EC number for transferred entries. Fixes 100.rafalcan

Release 71.0.6 - 2013-09-12

TypeChangesBy

add

Added dependency on intenz-config, refactored out from this module and also used by intenz-ws.rafalcan

update

Updated to latest versions of parent, intenz-ffwriter and biobabel-core.rafalcan

Release 71.0.5 - 2013-06-05

TypeChangesBy

update

Updated to latest version of intenz-core, which adds links to MetaCyc, ExplorEnz and UniPathway and fixes the URLs for MetaCyc and CSA.rafalcan

Database links now grouped ("Enzyme Nomenclature", "Structural data") and sorted.rafalcan

Release 71.0.4 - 2013-05-28

TypeChangesBy

remove

Updated to latest intenz-core version, which removes automatic links to ERGO (website not working any more).rafalcan

update

Updated to latest versions of intenz-ffwriter, biobabel-citations and junit.rafalcan

Release 71.0.3 - 2013-04-26

TypeChangesBy

fix

Fixed URL for ajax call, which worked from inside the EBI network but not from outside and resulting in an error dialog when there were no search results.rafalcan

Release 71.0.2 - 2013-04-22

TypeChangesBy

update

Updated to latest version of intenz-ffwriter.rafalcan

Release 71.0.1 - 2013-03-12

TypeChangesBy

update

Updated to latest versions of intenz-mapper and intenz-ffwriter.rafalcan

Release 71.0.0 - 2013-02-26

TypeChangesBy

update

Redesigned pages according to the new EBI website guidelines.rafalcan

update

Updated to latest versions of intenz-core, intenz-mapper, intenz-ffwriter and biobabel-core.rafalcan

fix

Changed citations links from CiteXplore (retiring) to Europe PubMed Central.rafalcan

fix

Caught exception in case the news RSS feed (SourceForge) does not work.rafalcan

Release 70.1.0 - 2012-12-03

TypeChangesBy

add

Added IUBMB flag to reactions.rafalcan

update

Updated to latest versions of intenz-core and intenz-mapper - which implement IUBMB flags for reactions -, intenz-ffwriter, intenz-database, rhea-domain, rhea-mapper, biobabel-core and biobabel-citations.rafalcan

Release 70.0.5 - 2012-09-07

TypeChangesBy

update

Updated to latest versions of intenz-core - which fixes ENZYME URLS - intenz-database, intenz-ffwriter, and biobabel-citations (overriding transitive dependency from rhea-domain to fix problems retrieving citations).rafalcan

fix

Preliminary Rhea reactions are now clearly labeled.rafalcan

Release 70.0.4 - 2012-08-08

TypeChangesBy

add

Added configuration to web.xml to allow filtering of URLs requested by the load balancer, not to register in the access log.rafalcan

Release 70.0.3 - 2012-07-27

TypeChangesBy

update

Updated to latest versions of intenz-core, intenz-mapper, intenz-ffwriter, rhea-domain and biobabel-core.rafalcan

remove

Removed unused dependency (biobabel-citations).rafalcan

Release 70.0.2 - 2012-01-20

TypeChangesBy

update

Updated to latest versions of intenz-ffwriter, rhea-domain, biobabel-core and biobabel-citations.rafalcan

Release 70.0.1 - 2011-08-11

TypeChangesBy

fix

Fixed trigger of property change when the Rhea data source is changed (via JMX, for example), so that statistics are automatically updated.rafalcan

fix

The IntEnzConfig MBean is now deregistered with application undeployment.rafalcan

update

Updated to latest versions of intenz-core, intenz-database - which introduces a hack to avoid long wait for statistics retrieval - and intenz-ffwriter.rafalcan

Release 70.0.0 - 2011-06-22

TypeChangesBy

fix

Fixed news block to get them from the SF RSS feed.rafalcan

add

Added xalan dependency for the above item.rafalcan

update

Updated to latest versions of mapper, ffwriter, rhea-domain and oracle driver (11g).rafalcan

add

Added class IntEnzConfig to hold configuration parameters for the application. It is exported as MBean for JMX management.rafalcan

fix

Reorganised properties in different files and directories.rafalcan

remove

Removed IntEnzConnectionPool. Now a data source from the container will be used.rafalcan

Release 69.0.0 - 2011-05-24

TypeChangesBy

update

Updated to latest version of mapper and ffwriter.rafalcan

Release 68.0.0 - 2011-03-17

TypeChangesBy

update

Updated to latest version of dependencies: core, mapper, ffwriter, rhea-domain, biobabel-core, bioabel-webapp and biobabel-citations.rafalcan

Release 67.0.0 - 2011-02-15

TypeChangesBy

update

Updated to latest version of dependencies: mapper, ffwriter, rhea-domain and oracle.rafalcan

Release 65 - 2010-12-09

TypeChangesBy

update

In addition to the last release: 1 subsubclasse. 25 enzyme entries (from ENZYMES). 27 enzyme entries (from ID2EC). 1 synonym was removed.hongcao

Release 64.0.1 - 2010-12-01

TypeChangesBy

fix

The webapp was pointing to a non-existant properties file.rafalcan

Release 64 - 2010-11-11

TypeChangesBy

update

Updated to latest version of intenz-ffwriter, rhea-domain, commons-collections and javax.mail.rafalcan

remove

Removed redundant - and sometimes wrong - line with info on trasferred entries.rafalcan

remove

Removed sitemap file (will be out of the war file).rafalcan

add

Added google site verification as a meta tag.rafalcan

Release 63 - 2010-10-13

TypeChangesBy

fix

Fixed xrefs links titles, which showed too many white space (line feeds) in Safari.rafalcan

fix

Fixed mispelling of 'Committee'.rafalcan

update

Updated to latest version of intenz-mapper.rafalcan

Release 62 - 2010-09-15

TypeChangesBy

update

Updated to latest version of intenz-ffwriter.rafalcan

Release 61 - 2010-06-09

No changes in this release.

Release 60 - 2010-05-11

TypeChangesBy

update

Updated to latest version of intenz-ffwriter.rafalcan

Release 59 - 2010-04-15

TypeChangesBy

update

Updated to latest version of intenz-core, intenz-mapper and intenz-ffwriter.rafalcan

add

Added a search command for listing preliminary EC numbers.rafalcan

Release 58 - 2010-03-10

TypeChangesBy

update

Updated to latest version of intenz-core and biobabel-core.rafalcan

fix

Fixed bug in Rhea reaction representation.rafalcan

fix

Remapped Rhea reactions (no xrefs to undefined directions any more, replaced by bidirectional counterpart). [This is a fix in the database, actually, not in the webapp]rafalcan

Release 57 - 2010-02-08

TypeChangesBy

update

Updated to latest version of ffwriter.rafalcan

Release 56 - 2010-01-11

No changes in this release.

Release 55 - 2009-12-04

TypeChangesBy

add

Added Rhea cross-references to the IntEnzXML export (part of the intenz-export module, actually).rafalcan

Release 54 - 2009-11-05

No changes in this release.

Release 53 - 2009-10-08

TypeChangesBy

add

Added support for preliminary EC numbers.rafalcan

add

Added Rhea identifiers to the text index (part of the intenz-dbIndexing module, actually).rafalcan

remove

Removed IUBMB view and proposed entries list.rafalcan

Release 52 - 2009-08-27

TypeChangesBy

fix

Reorganised files. First release as open source.rafalcan

Release 51 - 2009-08-05

TypeChangesBy

fix

Fixed problem with the tag file rendering linked cofactors.rafalcan

update

Updated to latest version of ffwriter - which adds a list of exceptions to DE line for transferred and deleted entries - and biobabel.citations modules.rafalcan

Release 50 - 2009-06-25

TypeChangesBy

update

Updated to latest ffwriter version - which adds a new exception to DE line for a transferred entry -, mapper - which fixes issue with database cursors - and xchars-taglib.rafalcan

Release 49.1 - 2009-06-10

TypeChangesBy

fix

Fixed the URL for spotlight images taken from PDBe (formerly MSD) website.rafalcan

Release 49 - 2009-05-11

TypeChangesBy

add

Added Rhea reactions whenever available and public.rafalcan

add

Added BioPAX export format to the downloads area.rafalcan

Release 48 - 2009-03-12

No changes in this release.

Release 47 - 2009-01-28

TypeChangesBy

fix

Showing missing enzyme name qualifiers (misprint, incorrect).rafalcan

fix

Sending help and error messages to the right recipients.rafalcan

update

Updated to latest ffwriter version, which adds a new exception to DE line for a transferred entry.rafalcan

Release 46 - 2008-12-10

No changes in this release.

Release 45 - 2008-11-06

No changes in this release.

Release 44 - 2008-09-25

No changes in this release.

Release 43 - 2008-08-20

No changes in this release.

Release 42 - 2008-07-07

TypeChangesBy

update

Updated dependencies in order to use latest xchars configuration and correct UniProt URLs.rafalcan

Release 41 - 2008-06-05

No changes in this release.

Release 40 - 2008-05-01

No changes in this release.

Release 39.0.1 - 2008-04-09

TypeChangesBy

fix

Fixed NullPointerException when there are no results.rafalcan

fix

Fixed search results list: if searching for an EC number and there are more than one result, the exact match is first in the list, and highlighted.rafalcan

Release 39.0 - 2008-03-31

No changes in this release.

Release 38.0 - 2008-02-18

TypeChangesBy

update

First release with a mavenized webapp. Using Rhea packages. Cofactors linked to ChEBI.rafalcan