The following document contains the results of Checkstyle. 
| Rules | Violations | Severity |
|---|---|---|
JavadocPackage
| 10 |  Error |
| NewlineAtEndOfFile | 3 | Error |
| Translation | 0 | Error |
| FileLength | 0 | Error |
FileTabCharacter
| 1496 | Error |
RegexpSingleline
| 44 | Error |
| JavadocMethod | 600 | Error |
| JavadocType | 7 | Error |
| JavadocVariable | 259 | Error |
| JavadocStyle | 25 | Error |
| ConstantName | 1 | Error |
| LocalFinalVariableName | 0 | Error |
| LocalVariableName | 3 | Error |
| MemberName | 4 | Error |
| MethodName | 0 | Error |
| PackageName | 0 | Error |
| ParameterName | 1 | Error |
| StaticVariableName | 3 | Error |
| TypeName | 0 | Error |
| AvoidStarImport | 17 | Error |
| IllegalImport | 0 | Error |
| RedundantImport | 1 | Error |
| UnusedImports | 57 | Error |
| LineLength | 1421 | Error |
| MethodLength | 1 | Error |
| ParameterNumber | 0 | Error |
| EmptyForIteratorPad | 1 | Error |
| MethodParamPad | 11 | Error |
| NoWhitespaceAfter | 0 | Error |
| NoWhitespaceBefore | 0 | Error |
| OperatorWrap | 64 | Error |
| ParenPad | 54 | Error |
| TypecastParenPad | 0 | Error |
| WhitespaceAfter | 5 | Error |
| WhitespaceAround | 206 | Error |
| ModifierOrder | 37 | Error |
| RedundantModifier | 0 | Error |
| AvoidNestedBlocks | 0 | Error |
| EmptyBlock | 1 | Error |
| LeftCurly | 0 | Error |
| NeedBraces | 224 | Error |
| RightCurly | 0 | Error |
| AvoidInlineConditionals | 78 | Error |
| EmptyStatement | 0 | Error |
| EqualsHashCode | 0 | Error |
| HiddenField | 165 | Error |
| IllegalInstantiation | 0 | Error |
| InnerAssignment | 5 | Error |
| MagicNumber | 36 | Error |
| MissingSwitchDefault | 1 | Error |
| RedundantThrows | 3 | Error |
| SimplifyBooleanExpression | 0 | Error |
| SimplifyBooleanReturn | 1 | Error |
| DesignForExtension | 420 | Error |
| FinalClass | 1 | Error |
| HideUtilityClassConstructor | 8 | Error |
| InterfaceIsType | 0 | Error |
| VisibilityModifier | 14 | Error |
| ArrayTypeStyle | 0 | Error |
| FinalParameters | 834 | Error |
| TodoComment | 7 | Error |
| UpperEll | 0 | Error |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| Line is longer than 80 characters (found 100). | 9 |
| Line is longer than 80 characters (found 108). | 12 |
| Missing a Javadoc comment. | 18 |
| Missing a Javadoc comment. | 20 |
| Parameter con should be final. | 20 |
| 'con' hides a field. | 20 |
| Missing a Javadoc comment. | 24 |
| Parameter event should be final. | 24 |
| Method 'valueUnbound' is not designed for extension - needs to be abstract, final or empty. | 27 |
| Missing a Javadoc comment. | 27 |
| Parameter event should be final. | 27 |
| Line is longer than 80 characters (found 86). | 31 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 22 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 24 |
| Missing a Javadoc comment. | 24 |
| Parameter mapping should be final. | 24 |
| Parameter form should be final. | 25 |
| Parameter request should be final. | 26 |
| Line is longer than 80 characters (found 81). | 27 |
| Parameter response should be final. | 27 |
| Missing a Javadoc comment. | 34 |
| Parameter request should be final. | 34 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 108). | 26 |
| Line contains a tab character. | 33 |
| Missing a Javadoc comment. | 33 |
| Line contains a tab character. | 35 |
| Missing a Javadoc comment. | 35 |
| Line contains a tab character. | 36 |
| Method 'init' is not designed for extension - needs to be abstract, final or empty. | 38 |
| Line is longer than 80 characters (found 86). | 47 |
| Method 'process' is not designed for extension - needs to be abstract, final or empty. | 54 |
| Line is longer than 80 characters (found 106). | 55 |
| Parameter httpServletRequest should be final. | 55 |
| Parameter httpServletResponse should be final. | 55 |
| Line contains a tab character. | 57 |
| '{' is not preceded with whitespace. | 57 |
| Line contains a tab character. | 58 |
| Line is longer than 80 characters (found 82). | 59 |
| Line is longer than 80 characters (found 107). | 63 |
| Line is longer than 80 characters (found 110). | 75 |
| Line is longer than 80 characters (found 110). | 82 |
| Line is longer than 80 characters (found 114). | 87 |
| Line contains a tab character. | 88 |
| Line is longer than 80 characters (found 84). | 95 |
| Parameter request should be final. | 102 |
| Expected @throws tag for 'IOException'. | 103 |
| Line is longer than 80 characters (found 107). | 112 |
| Line is longer than 80 characters (found 102). | 118 |
| Missing a Javadoc comment. | 118 |
| Parameter req should be final. | 118 |
| Line is longer than 80 characters (found 91). | 120 |
| '{' is not preceded with whitespace. | 122 |
| Line is longer than 80 characters (found 82). | 123 |
| Line contains a tab character. | 123 |
| Line is longer than 80 characters (found 109). | 124 |
| Line is longer than 80 characters (found 82). | 135 |
| Method 'saveErrors' is not designed for extension - needs to be abstract, final or empty. | 135 |
| Parameter request should be final. | 135 |
| Parameter errors should be final. | 135 |
| Violation | Message | Line |
|---|---|---|
| Unused import - java.io.UnsupportedEncodingException. | 3 |
| Unused import - java.net.URLDecoder. | 4 |
| Line is longer than 80 characters (found 84). | 23 |
| Line is longer than 80 characters (found 100). | 25 |
| Method 'init' is not designed for extension - needs to be abstract, final or empty. | 25 |
| Missing a Javadoc comment. | 25 |
| Parameter actionServlet should be final. | 25 |
| Parameter moduleConfig should be final. | 25 |
| Line is longer than 80 characters (found 109). | 26 |
| Line has trailing spaces. | 29 |
| Line is longer than 80 characters (found 84). | 33 |
| Line is longer than 80 characters (found 91). | 34 |
| Line is longer than 80 characters (found 117). | 35 |
| Line is longer than 80 characters (found 98). | 38 |
| Missing a Javadoc comment. | 41 |
| '{' is not preceded with whitespace. | 41 |
| '{' is not followed by whitespace. | 41 |
| '}' is not preceded with whitespace. | 41 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 115). | 43 |
| Line is longer than 80 characters (found 117). | 44 |
| Line is longer than 80 characters (found 98). | 45 |
| Line is longer than 80 characters (found 111). | 46 |
| Line is longer than 80 characters (found 83). | 53 |
| Line is longer than 80 characters (found 120). | 56 |
| Line is longer than 80 characters (found 92). | 59 |
| Line contains a tab character. | 66 |
| Missing a Javadoc comment. | 66 |
| Line contains a tab character. | 67 |
| Missing a Javadoc comment. | 69 |
| Line contains a tab character. | 69 |
| Missing a Javadoc comment. | 69 |
| Missing a Javadoc comment. | 69 |
| Line contains a tab character. | 71 |
| Line contains a tab character. | 72 |
| Line contains a tab character. | 73 |
| Line is longer than 80 characters (found 89). | 74 |
| Line contains a tab character. | 74 |
| Line contains a tab character. | 75 |
| Line contains a tab character. | 76 |
| Line contains a tab character. | 77 |
| Line contains a tab character. | 78 |
| Line contains a tab character. | 79 |
| Line contains a tab character. | 80 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 81 |
| Line contains a tab character. | 82 |
| Parameter mapping should be final. | 82 |
| Line contains a tab character. | 83 |
| Parameter form should be final. | 83 |
| Line contains a tab character. | 84 |
| Parameter request should be final. | 84 |
| Line contains a tab character. | 85 |
| Parameter response should be final. | 85 |
| Line contains a tab character. | 86 |
| Line contains a tab character. | 87 |
| Line contains a tab character. | 88 |
| Line contains a tab character. | 90 |
| Line contains a tab character. | 91 |
| Line contains a tab character. | 92 |
| Line contains a tab character. | 93 |
| Line is longer than 80 characters (found 90). | 94 |
| Line contains a tab character. | 94 |
| Line contains a tab character. | 95 |
| 'if' construct must use '{}'s. | 96 |
| Line is longer than 80 characters (found 86). | 96 |
| Line contains a tab character. | 96 |
| 'if' is not followed by whitespace. | 96 |
| Line is longer than 80 characters (found 96). | 97 |
| Line contains a tab character. | 97 |
| Line is longer than 80 characters (found 81). | 98 |
| Line contains a tab character. | 98 |
| Line contains a tab character. | 99 |
| Line contains a tab character. | 100 |
| 'if' construct must use '{}'s. | 101 |
| Line contains a tab character. | 101 |
| Line is longer than 80 characters (found 88). | 102 |
| Line contains a tab character. | 102 |
| Line contains a tab character. | 103 |
| Line contains a tab character. | 104 |
| '+' is not preceded with whitespace. | 104 |
| '+' is not followed by whitespace. | 104 |
| Line is longer than 80 characters (found 102). | 105 |
| Line contains a tab character. | 105 |
| '?' is not preceded with whitespace. | 105 |
| Avoid inline conditionals. | 105 |
| Line contains a tab character. | 106 |
| Line contains a tab character. | 109 |
| Line contains a tab character. | 111 |
| Line is longer than 80 characters (found 96). | 112 |
| Line contains a tab character. | 112 |
| Line contains a tab character. | 113 |
| Line contains a tab character. | 114 |
| Line contains a tab character. | 115 |
| Expected an @return tag. | 116 |
| Line is longer than 80 characters (found 118). | 116 |
| Line contains a tab character. | 116 |
| Parameter enzymeDTO should be final. | 116 |
| Parameter request should be final. | 116 |
| Expected @param tag for 'request'. | 116 |
| Expected @throws tag for 'DomainException'. | 116 |
| Line is longer than 80 characters (found 85). | 117 |
| Line contains a tab character. | 117 |
| Line is longer than 80 characters (found 81). | 118 |
| Line contains a tab character. | 118 |
| Line contains a tab character. | 120 |
| Line contains a tab character. | 121 |
| Line contains a tab character. | 123 |
| 'if' construct must use '{}'s. | 124 |
| Line is longer than 80 characters (found 134). | 124 |
| Line contains a tab character. | 124 |
| 'if' construct must use '{}'s. | 125 |
| Line is longer than 80 characters (found 127). | 125 |
| Line contains a tab character. | 125 |
| 'if' construct must use '{}'s. | 126 |
| Line is longer than 80 characters (found 101). | 126 |
| Line contains a tab character. | 126 |
| Line contains a tab character. | 127 |
| '{' is not preceded with whitespace. | 127 |
| Line is longer than 80 characters (found 91). | 128 |
| Line contains a tab character. | 128 |
| Line is longer than 80 characters (found 95). | 129 |
| Line contains a tab character. | 129 |
| Line contains a tab character. | 130 |
| Line contains a tab character. | 131 |
| Line is longer than 80 characters (found 87). | 132 |
| Line contains a tab character. | 132 |
| Line is longer than 80 characters (found 93). | 133 |
| Line contains a tab character. | 133 |
| Line contains a tab character. | 134 |
| Line is longer than 80 characters (found 102). | 135 |
| Line contains a tab character. | 135 |
| Line is longer than 80 characters (found 109). | 136 |
| Line contains a tab character. | 136 |
| Line contains a tab character. | 137 |
| Line contains a tab character. | 138 |
| Line contains a tab character. | 139 |
| '{' is not preceded with whitespace. | 139 |
| Line contains a tab character. | 140 |
| Line contains a tab character. | 141 |
| 'if' construct must use '{}'s. | 142 |
| Line is longer than 80 characters (found 95). | 142 |
| Line contains a tab character. | 142 |
| 'if' construct must use '{}'s. | 143 |
| Line is longer than 80 characters (found 86). | 143 |
| Line contains a tab character. | 143 |
| 'if' construct must use '{}'s. | 144 |
| Line is longer than 80 characters (found 101). | 144 |
| Line contains a tab character. | 144 |
| Line contains a tab character. | 145 |
| Line contains a tab character. | 147 |
| 'if' construct must use '{}'s. | 148 |
| Line is longer than 80 characters (found 109). | 148 |
| Line contains a tab character. | 148 |
| 'if' construct must use '{}'s. | 149 |
| Line is longer than 80 characters (found 103). | 149 |
| Line contains a tab character. | 149 |
| 'if' construct must use '{}'s. | 150 |
| Line is longer than 80 characters (found 112). | 150 |
| Line contains a tab character. | 150 |
| 'if' construct must use '{}'s. | 151 |
| Line is longer than 80 characters (found 109). | 151 |
| Line contains a tab character. | 151 |
| 'if' construct must use '{}'s. | 152 |
| Line is longer than 80 characters (found 106). | 152 |
| Line contains a tab character. | 152 |
| 'if' construct must use '{}'s. | 153 |
| Line is longer than 80 characters (found 97). | 153 |
| Line contains a tab character. | 153 |
| 'if' construct must use '{}'s. | 154 |
| Line is longer than 80 characters (found 112). | 154 |
| Line contains a tab character. | 154 |
| Line contains a tab character. | 155 |
| Line contains a tab character. | 157 |
| Line is longer than 80 characters (found 84). | 158 |
| Line contains a tab character. | 158 |
| Line is longer than 80 characters (found 92). | 159 |
| Line contains a tab character. | 159 |
| Line contains a tab character. | 160 |
| Line contains a tab character. | 161 |
| Line contains a tab character. | 162 |
| Line is longer than 80 characters (found 86). | 165 |
| Line contains a tab character. | 165 |
| Missing a Javadoc comment. | 165 |
| Parameter enzymeDTO should be final. | 165 |
| Parameter request should be final. | 165 |
| Line contains a tab character. | 166 |
| Line contains a tab character. | 167 |
| Line contains a tab character. | 168 |
| Line contains a tab character. | 169 |
| Line contains a tab character. | 170 |
| Line is longer than 80 characters (found 98). | 171 |
| Line contains a tab character. | 171 |
| '?' is not preceded with whitespace. | 171 |
| '?' should be on a new line. | 171 |
| Avoid inline conditionals. | 171 |
| Line is longer than 80 characters (found 104). | 172 |
| Line contains a tab character. | 172 |
| Line contains a tab character. | 173 |
| Line is longer than 80 characters (found 106). | 174 |
| Line contains a tab character. | 174 |
| '?' is not preceded with whitespace. | 174 |
| '?' should be on a new line. | 174 |
| Avoid inline conditionals. | 174 |
| Line is longer than 80 characters (found 112). | 175 |
| Line contains a tab character. | 175 |
| Line contains a tab character. | 176 |
| Line is longer than 80 characters (found 98). | 177 |
| Line contains a tab character. | 177 |
| '?' is not preceded with whitespace. | 177 |
| '?' should be on a new line. | 177 |
| Avoid inline conditionals. | 177 |
| Line is longer than 80 characters (found 87). | 178 |
| Line contains a tab character. | 178 |
| Line contains a tab character. | 179 |
| Line is longer than 80 characters (found 98). | 180 |
| Line contains a tab character. | 180 |
| '?' is not preceded with whitespace. | 180 |
| '?' should be on a new line. | 180 |
| Avoid inline conditionals. | 180 |
| Line is longer than 80 characters (found 110). | 181 |
| Line contains a tab character. | 181 |
| Line is longer than 80 characters (found 81). | 183 |
| Line contains a tab character. | 183 |
| Line contains a tab character. | 184 |
| Line contains a tab character. | 185 |
| Line contains a tab character. | 186 |
| Line contains a tab character. | 187 |
| Line contains a tab character. | 188 |
| Line contains a tab character. | 189 |
| '{' is not preceded with whitespace. | 189 |
| Line contains a tab character. | 190 |
| Line contains a tab character. | 191 |
| Line contains a tab character. | 192 |
| Line contains a tab character. | 193 |
| Line contains a tab character. | 194 |
| Line is longer than 80 characters (found 98). | 195 |
| Line contains a tab character. | 195 |
| Line is longer than 80 characters (found 123). | 196 |
| Line contains a tab character. | 196 |
| Line contains a tab character. | 197 |
| '{' is not preceded with whitespace. | 197 |
| Line contains a tab character. | 198 |
| Line contains a tab character. | 199 |
| '{' is not preceded with whitespace. | 199 |
| Line is longer than 80 characters (found 94). | 200 |
| Line contains a tab character. | 200 |
| Line is longer than 80 characters (found 93). | 201 |
| Line contains a tab character. | 201 |
| Line contains a tab character. | 202 |
| Line contains a tab character. | 203 |
| Line contains a tab character. | 205 |
| Line contains a tab character. | 206 |
| Line contains a tab character. | 207 |
| Line contains a tab character. | 208 |
| Line contains a tab character. | 209 |
| Line contains a tab character. | 210 |
| Line contains a tab character. | 211 |
| Parameter names should be final. | 211 |
| Parameter type should be final. | 211 |
| Expected @param tag for 'type'. | 211 |
| Line contains a tab character. | 212 |
| Line is longer than 80 characters (found 82). | 213 |
| Line contains a tab character. | 213 |
| Line contains a tab character. | 214 |
| Line contains a tab character. | 215 |
| Line contains a tab character. | 216 |
| Line contains a tab character. | 218 |
| Line contains a tab character. | 219 |
| Line contains a tab character. | 220 |
| Line contains a tab character. | 221 |
| Line contains a tab character. | 222 |
| Line contains a tab character. | 223 |
| Line contains a tab character. | 224 |
| Parameter names should be final. | 224 |
| Parameter request should be final. | 224 |
| Line contains a tab character. | 225 |
| Line is longer than 80 characters (found 81). | 226 |
| Line contains a tab character. | 226 |
| Line is longer than 80 characters (found 82). | 227 |
| Line contains a tab character. | 227 |
| 'if' construct must use '{}'s. | 228 |
| Line is longer than 80 characters (found 104). | 228 |
| Line contains a tab character. | 228 |
| Line contains a tab character. | 229 |
| Line contains a tab character. | 230 |
| Line contains a tab character. | 232 |
| Line contains a tab character. | 233 |
| Line contains a tab character. | 234 |
| Line contains a tab character. | 235 |
| Line contains a tab character. | 236 |
| Line contains a tab character. | 237 |
| Parameter reactions should be final. | 237 |
| Line is longer than 80 characters (found 85). | 238 |
| Line contains a tab character. | 238 |
| Line is longer than 80 characters (found 86). | 239 |
| Line contains a tab character. | 239 |
| Line contains a tab character. | 240 |
| Line contains a tab character. | 241 |
| Line is longer than 80 characters (found 84). | 243 |
| Line contains a tab character. | 243 |
| Missing a Javadoc comment. | 243 |
| Parameter reactions should be final. | 243 |
| Parameter reaction should be final. | 243 |
| Line contains a tab character. | 244 |
| 'if' construct must use '{}'s. | 245 |
| Line is longer than 80 characters (found 96). | 245 |
| Line contains a tab character. | 245 |
| Line contains a tab character. | 246 |
| Line is longer than 80 characters (found 86). | 247 |
| Line contains a tab character. | 247 |
| Line is longer than 80 characters (found 93). | 248 |
| Line contains a tab character. | 248 |
| Line contains a tab character. | 249 |
| Line has trailing spaces. | 250 |
| Line contains a tab character. | 250 |
| Line contains a tab character. | 251 |
| Line contains a tab character. | 252 |
| Line contains a tab character. | 254 |
| Line contains a tab character. | 255 |
| Line contains a tab character. | 256 |
| Line contains a tab character. | 257 |
| Line contains a tab character. | 258 |
| Line contains a tab character. | 259 |
| Line is longer than 80 characters (found 82). | 260 |
| Line contains a tab character. | 260 |
| Parameter reactions should be final. | 260 |
| Parameter request should be final. | 260 |
| Line is longer than 80 characters (found 85). | 261 |
| Line contains a tab character. | 261 |
| Line is longer than 80 characters (found 81). | 262 |
| Line contains a tab character. | 262 |
| Line is longer than 80 characters (found 82). | 263 |
| Line contains a tab character. | 263 |
| 'if' construct must use '{}'s. | 264 |
| Line is longer than 80 characters (found 112). | 264 |
| Line contains a tab character. | 264 |
| Line is longer than 80 characters (found 82). | 265 |
| Line contains a tab character. | 265 |
| Line contains a tab character. | 266 |
| Line contains a tab character. | 268 |
| Line contains a tab character. | 269 |
| Line contains a tab character. | 270 |
| Unused @param tag for 'cofactors'. | 270 |
| Line is longer than 80 characters (found 98). | 271 |
| Line contains a tab character. | 271 |
| Line is longer than 80 characters (found 94). | 272 |
| Line contains a tab character. | 272 |
| Line is longer than 80 characters (found 110). | 273 |
| Line contains a tab character. | 273 |
| Line contains a tab character. | 274 |
| Line contains a tab character. | 275 |
| Line is longer than 80 characters (found 82). | 276 |
| Line contains a tab character. | 276 |
| Line contains a tab character. | 277 |
| Line is longer than 80 characters (found 95). | 278 |
| Line contains a tab character. | 278 |
| Line contains a tab character. | 279 |
| Line is longer than 80 characters (found 85). | 280 |
| Line contains a tab character. | 280 |
| Parameter cofactorDtos should be final. | 280 |
| Expected @param tag for 'cofactorDtos'. | 280 |
| Parameter cofactor should be final. | 280 |
| Expected @param tag for 'cofactor'. | 280 |
| Line is longer than 80 characters (found 97). | 281 |
| Line contains a tab character. | 281 |
| Parameter complexCofactorDtoIndex should be final. | 281 |
| Parameter complexCofactorDtoInternalIndex should be final. | 281 |
| Line is longer than 80 characters (found 88). | 282 |
| Line contains a tab character. | 282 |
| Parameter complexCofactorOperator should be final. | 282 |
| Parameter complexCofactorBrackets should be final. | 282 |
| Expected @throws tag for 'DomainException'. | 283 |
| Line is longer than 80 characters (found 88). | 284 |
| Line contains a tab character. | 284 |
| '{' is not preceded with whitespace. | 286 |
| Line is longer than 80 characters (found 82). | 289 |
| '{' is not preceded with whitespace. | 289 |
| Line is longer than 80 characters (found 94). | 290 |
| '{' is not preceded with whitespace. | 293 |
| Line is longer than 80 characters (found 97). | 294 |
| Line contains a tab character. | 294 |
| Line contains a tab character. | 295 |
| Line contains a tab character. | 296 |
| Line contains a tab character. | 297 |
| Line contains a tab character. | 298 |
| Line contains a tab character. | 300 |
| Line contains a tab character. | 301 |
| '{' is not preceded with whitespace. | 301 |
| Line contains a tab character. | 302 |
| Line is longer than 80 characters (found 94). | 303 |
| Line contains a tab character. | 303 |
| Line contains a tab character. | 304 |
| Line contains a tab character. | 305 |
| Line is longer than 80 characters (found 94). | 306 |
| Line contains a tab character. | 306 |
| Line contains a tab character. | 307 |
| Line contains a tab character. | 308 |
| Line is longer than 80 characters (found 94). | 309 |
| Line contains a tab character. | 309 |
| Line contains a tab character. | 310 |
| Line contains a tab character. | 311 |
| Line is longer than 80 characters (found 96). | 312 |
| Line contains a tab character. | 312 |
| Line is longer than 80 characters (found 85). | 313 |
| Line contains a tab character. | 313 |
| '{' is not preceded with whitespace. | 313 |
| Line is longer than 80 characters (found 86). | 314 |
| Line contains a tab character. | 314 |
| Line is longer than 80 characters (found 96). | 315 |
| Line contains a tab character. | 315 |
| Line is longer than 80 characters (found 85). | 316 |
| Line contains a tab character. | 316 |
| Line is longer than 80 characters (found 100). | 317 |
| Line contains a tab character. | 317 |
| Line is longer than 80 characters (found 96). | 318 |
| Line contains a tab character. | 318 |
| Line is longer than 80 characters (found 83). | 319 |
| Line contains a tab character. | 319 |
| Line is longer than 80 characters (found 88). | 320 |
| Line contains a tab character. | 320 |
| Line is longer than 80 characters (found 96). | 321 |
| Line contains a tab character. | 321 |
| Line is longer than 80 characters (found 89). | 322 |
| Line contains a tab character. | 322 |
| Line contains a tab character. | 323 |
| Line is longer than 80 characters (found 96). | 324 |
| Line contains a tab character. | 324 |
| Line is longer than 80 characters (found 95). | 325 |
| Line contains a tab character. | 325 |
| Line is longer than 80 characters (found 124). | 326 |
| Line contains a tab character. | 326 |
| Line is longer than 80 characters (found 105). | 327 |
| Line contains a tab character. | 327 |
| Line is longer than 80 characters (found 110). | 328 |
| Line contains a tab character. | 328 |
| Line is longer than 80 characters (found 89). | 329 |
| Line contains a tab character. | 329 |
| Line is longer than 80 characters (found 122). | 330 |
| Line contains a tab character. | 330 |
| Line is longer than 80 characters (found 106). | 331 |
| Line contains a tab character. | 331 |
| Line is longer than 80 characters (found 98). | 332 |
| Line contains a tab character. | 332 |
| Line is longer than 80 characters (found 96). | 333 |
| Line contains a tab character. | 333 |
| Line is longer than 80 characters (found 128). | 334 |
| Line contains a tab character. | 334 |
| Line contains a tab character. | 335 |
| Line contains a tab character. | 336 |
| Line contains a tab character. | 338 |
| Line has trailing spaces. | 339 |
| Line contains a tab character. | 339 |
| Line is longer than 80 characters (found 97). | 340 |
| Line contains a tab character. | 340 |
| Missing a Javadoc comment. | 340 |
| Parameter complexCofactor should be final. | 340 |
| Parameter simpleCofactor should be final. | 340 |
| Line is longer than 80 characters (found 84). | 341 |
| Line contains a tab character. | 341 |
| Parameter operator should be final. | 341 |
| Parameter newSimpleCofactor should be final. | 341 |
| Parameter bracket should be final. | 341 |
| '{' is not preceded with whitespace. | 341 |
| Line contains a tab character. | 342 |
| Line is longer than 80 characters (found 99). | 343 |
| Line contains a tab character. | 343 |
| Line contains a tab character. | 344 |
| Line is longer than 80 characters (found 82). | 345 |
| Line contains a tab character. | 345 |
| Line is longer than 80 characters (found 110). | 346 |
| Line contains a tab character. | 346 |
| '+' is not preceded with whitespace. | 346 |
| '+' is not followed by whitespace. | 346 |
| '?' is not preceded with whitespace. | 346 |
| Avoid inline conditionals. | 346 |
| ':' is not preceded with whitespace. | 346 |
| ':' is not followed by whitespace. | 346 |
| '+' is not preceded with whitespace. | 346 |
| '+' is not followed by whitespace. | 346 |
| '+' is not preceded with whitespace. | 346 |
| '+' is not followed by whitespace. | 346 |
| '+' is not preceded with whitespace. | 346 |
| '+' is not followed by whitespace. | 346 |
| '+' is not preceded with whitespace. | 346 |
| '+' is not followed by whitespace. | 346 |
| '+' is not preceded with whitespace. | 346 |
| '+' is not followed by whitespace. | 346 |
| '?' is not preceded with whitespace. | 346 |
| Avoid inline conditionals. | 346 |
| ':' is not preceded with whitespace. | 346 |
| ':' is not followed by whitespace. | 346 |
| '+' is not preceded with whitespace. | 346 |
| '+' is not followed by whitespace. | 346 |
| Line contains a tab character. | 347 |
| Line contains a tab character. | 349 |
| Missing a Javadoc comment. | 349 |
| Parameter s should be final. | 349 |
| '{' is not preceded with whitespace. | 349 |
| Line contains a tab character. | 350 |
| ',' is not followed by whitespace. | 350 |
| Line is longer than 80 characters (found 120). | 351 |
| Line contains a tab character. | 351 |
| '+' is not preceded with whitespace. | 351 |
| '+' is not followed by whitespace. | 351 |
| '+' is not preceded with whitespace. | 351 |
| '+' is not followed by whitespace. | 351 |
| '+' is not preceded with whitespace. | 351 |
| '+' is not followed by whitespace. | 351 |
| '+' is not preceded with whitespace. | 351 |
| '+' is not followed by whitespace. | 351 |
| Line contains a tab character. | 352 |
| Line contains a tab character. | 354 |
| Line contains a tab character. | 355 |
| Line contains a tab character. | 356 |
| Line contains a tab character. | 357 |
| Line contains a tab character. | 358 |
| Line contains a tab character. | 359 |
| Line is longer than 80 characters (found 82). | 360 |
| Line contains a tab character. | 360 |
| Parameter cofactors should be final. | 360 |
| Parameter request should be final. | 360 |
| Line is longer than 80 characters (found 85). | 361 |
| Line contains a tab character. | 361 |
| Line is longer than 80 characters (found 81). | 362 |
| Line contains a tab character. | 362 |
| Line is longer than 80 characters (found 82). | 363 |
| Line contains a tab character. | 363 |
| 'if' construct must use '{}'s. | 364 |
| Line is longer than 80 characters (found 112). | 364 |
| Line contains a tab character. | 364 |
| Line is longer than 80 characters (found 82). | 365 |
| Line contains a tab character. | 365 |
| Line contains a tab character. | 366 |
| Line contains a tab character. | 368 |
| Line contains a tab character. | 369 |
| Line contains a tab character. | 370 |
| Line contains a tab character. | 371 |
| Line contains a tab character. | 372 |
| Line contains a tab character. | 373 |
| Parameter comments should be final. | 373 |
| Line is longer than 80 characters (found 83). | 374 |
| Line contains a tab character. | 374 |
| Line is longer than 80 characters (found 82). | 375 |
| Line contains a tab character. | 375 |
| Line contains a tab character. | 376 |
| Line contains a tab character. | 377 |
| Line contains a tab character. | 379 |
| Line contains a tab character. | 380 |
| Line contains a tab character. | 381 |
| Line contains a tab character. | 382 |
| Line contains a tab character. | 383 |
| Line contains a tab character. | 384 |
| Line contains a tab character. | 385 |
| Parameter comments should be final. | 385 |
| Parameter request should be final. | 385 |
| Line is longer than 80 characters (found 83). | 386 |
| Line contains a tab character. | 386 |
| Line is longer than 80 characters (found 81). | 387 |
| Line contains a tab character. | 387 |
| Line is longer than 80 characters (found 82). | 388 |
| Line contains a tab character. | 388 |
| 'if' construct must use '{}'s. | 389 |
| Line is longer than 80 characters (found 110). | 389 |
| Line contains a tab character. | 389 |
| Line is longer than 80 characters (found 81). | 390 |
| Line contains a tab character. | 390 |
| Line contains a tab character. | 391 |
| Line contains a tab character. | 393 |
| Line contains a tab character. | 394 |
| Line contains a tab character. | 395 |
| Line contains a tab character. | 396 |
| Line contains a tab character. | 397 |
| Line contains a tab character. | 398 |
| Parameter links should be final. | 398 |
| Line contains a tab character. | 399 |
| Line contains a tab character. | 400 |
| Line contains a tab character. | 401 |
| Line contains a tab character. | 402 |
| Line contains a tab character. | 404 |
| Line contains a tab character. | 405 |
| Line contains a tab character. | 406 |
| Line contains a tab character. | 407 |
| Line contains a tab character. | 408 |
| Line contains a tab character. | 409 |
| Line contains a tab character. | 410 |
| Parameter links should be final. | 410 |
| Parameter request should be final. | 410 |
| Line contains a tab character. | 411 |
| Line is longer than 80 characters (found 81). | 412 |
| Line contains a tab character. | 412 |
| Line is longer than 80 characters (found 82). | 413 |
| Line contains a tab character. | 413 |
| 'if' construct must use '{}'s. | 414 |
| Line is longer than 80 characters (found 104). | 414 |
| Line contains a tab character. | 414 |
| Line contains a tab character. | 415 |
| Line contains a tab character. | 416 |
| Line contains a tab character. | 418 |
| Line contains a tab character. | 419 |
| Line contains a tab character. | 420 |
| Line contains a tab character. | 421 |
| Line contains a tab character. | 422 |
| Line contains a tab character. | 423 |
| Parameter references should be final. | 423 |
| Line is longer than 80 characters (found 87). | 424 |
| Line contains a tab character. | 424 |
| Line contains a tab character. | 425 |
| Line contains a tab character. | 426 |
| Line contains a tab character. | 427 |
| Line contains a tab character. | 429 |
| Line contains a tab character. | 430 |
| Line contains a tab character. | 431 |
| Line contains a tab character. | 432 |
| Line contains a tab character. | 433 |
| Line contains a tab character. | 434 |
| Line is longer than 80 characters (found 84). | 435 |
| Line contains a tab character. | 435 |
| Parameter references should be final. | 435 |
| Parameter request should be final. | 435 |
| Line is longer than 80 characters (found 87). | 436 |
| Line contains a tab character. | 436 |
| Line is longer than 80 characters (found 81). | 437 |
| Line contains a tab character. | 437 |
| Line is longer than 80 characters (found 82). | 438 |
| Line contains a tab character. | 438 |
| 'if' construct must use '{}'s. | 439 |
| Line is longer than 80 characters (found 114). | 439 |
| Line contains a tab character. | 439 |
| Line is longer than 80 characters (found 83). | 440 |
| Line contains a tab character. | 440 |
| Line contains a tab character. | 441 |
| Line contains a tab character. | 443 |
| Line is longer than 80 characters (found 118). | 444 |
| Line contains a tab character. | 444 |
| Line contains a tab character. | 445 |
| Line contains a tab character. | 446 |
| Line contains a tab character. | 447 |
| Line contains a tab character. | 448 |
| Line contains a tab character. | 449 |
| Parameter size should be final. | 449 |
| Expected @param tag for 'size'. | 449 |
| Line contains a tab character. | 450 |
| Line contains a tab character. | 451 |
| Line is longer than 80 characters (found 92). | 452 |
| Line contains a tab character. | 452 |
| Line contains a tab character. | 453 |
| Line is longer than 80 characters (found 94). | 454 |
| Line contains a tab character. | 454 |
| Line contains a tab character. | 455 |
| Line contains a tab character. | 456 |
| Line contains a tab character. | 457 |
| Line contains a tab character. | 459 |
| Line is longer than 80 characters (found 122). | 460 |
| Line contains a tab character. | 460 |
| Line contains a tab character. | 461 |
| Line contains a tab character. | 462 |
| Line contains a tab character. | 463 |
| Line contains a tab character. | 464 |
| Line contains a tab character. | 465 |
| Parameter size should be final. | 465 |
| Expected @param tag for 'size'. | 465 |
| Line contains a tab character. | 466 |
| Line contains a tab character. | 467 |
| Line is longer than 80 characters (found 81). | 468 |
| Line contains a tab character. | 468 |
| Line contains a tab character. | 469 |
| Line is longer than 80 characters (found 83). | 470 |
| Line contains a tab character. | 470 |
| Line contains a tab character. | 471 |
| Line contains a tab character. | 472 |
| Line contains a tab character. | 473 |
| Line contains a tab character. | 475 |
| Line is longer than 80 characters (found 118). | 476 |
| Line contains a tab character. | 476 |
| Line contains a tab character. | 477 |
| Line contains a tab character. | 478 |
| Line contains a tab character. | 479 |
| Line contains a tab character. | 480 |
| Line contains a tab character. | 481 |
| Parameter size should be final. | 481 |
| Expected @param tag for 'size'. | 481 |
| Line contains a tab character. | 482 |
| Line contains a tab character. | 483 |
| Line is longer than 80 characters (found 85). | 484 |
| Line contains a tab character. | 484 |
| Line contains a tab character. | 485 |
| Line is longer than 80 characters (found 87). | 486 |
| Line contains a tab character. | 486 |
| Line contains a tab character. | 487 |
| Line contains a tab character. | 488 |
| Line contains a tab character. | 489 |
| Line contains a tab character. | 491 |
| Line is longer than 80 characters (found 116). | 492 |
| Line contains a tab character. | 492 |
| Line contains a tab character. | 493 |
| Line contains a tab character. | 494 |
| Line contains a tab character. | 495 |
| Line contains a tab character. | 496 |
| Line contains a tab character. | 497 |
| Parameter size should be final. | 497 |
| Expected @param tag for 'size'. | 497 |
| Line contains a tab character. | 498 |
| Line contains a tab character. | 499 |
| Line is longer than 80 characters (found 87). | 500 |
| Line contains a tab character. | 500 |
| Line contains a tab character. | 501 |
| Line is longer than 80 characters (found 89). | 502 |
| Line contains a tab character. | 502 |
| Line contains a tab character. | 503 |
| Line contains a tab character. | 504 |
| Line contains a tab character. | 505 |
| Line contains a tab character. | 507 |
| Line contains a tab character. | 508 |
| Line contains a tab character. | 509 |
| Expected an @return tag. | 510 |
| Line contains a tab character. | 510 |
| Line contains a tab character. | 511 |
| Line is longer than 80 characters (found 94). | 512 |
| Line contains a tab character. | 512 |
| Line is longer than 80 characters (found 95). | 513 |
| Line contains a tab character. | 513 |
| Line is longer than 80 characters (found 83). | 514 |
| Line contains a tab character. | 514 |
| Line is longer than 80 characters (found 90). | 515 |
| Line contains a tab character. | 515 |
| Line contains a tab character. | 516 |
| Line is longer than 80 characters (found 92). | 517 |
| Line contains a tab character. | 517 |
| Line contains a tab character. | 518 |
| Line contains a tab character. | 519 |
| Line contains a tab character. | 520 |
| Line contains a tab character. | 521 |
| Line contains a tab character. | 522 |
| Line contains a tab character. | 524 |
| Missing a Javadoc comment. | 524 |
| Line contains a tab character. | 525 |
| Line contains a tab character. | 526 |
| Line is longer than 80 characters (found 82). | 527 |
| Line contains a tab character. | 527 |
| Line is longer than 80 characters (found 89). | 528 |
| Line contains a tab character. | 528 |
| Line contains a tab character. | 529 |
| Line is longer than 80 characters (found 91). | 530 |
| Line contains a tab character. | 530 |
| Line contains a tab character. | 531 |
| Line contains a tab character. | 532 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 84). | 22 |
| Line is longer than 80 characters (found 84). | 23 |
| Missing a Javadoc comment. | 23 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 25 |
| Missing a Javadoc comment. | 25 |
| Parameter mapping should be final. | 25 |
| Parameter form should be final. | 26 |
| Parameter request should be final. | 27 |
| Parameter response should be final. | 28 |
| Line is longer than 80 characters (found 158). | 29 |
| Line is longer than 80 characters (found 90). | 30 |
| '8' is a magic number. | 32 |
| Line is longer than 80 characters (found 125). | 34 |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| Using the '.*' form of import should be avoided - org.apache.struts.action.*. | 4 |
| Line is longer than 80 characters (found 114). | 26 |
| Missing a Javadoc comment. | 33 |
| Line contains a tab character. | 34 |
| Missing a Javadoc comment. | 36 |
| 'static' modifier out of order with the JLS suggestions. | 36 |
| Missing a Javadoc comment. | 37 |
| 'static' modifier out of order with the JLS suggestions. | 37 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 39 |
| Missing a Javadoc comment. | 39 |
| Parameter mapping should be final. | 39 |
| Parameter form should be final. | 40 |
| Parameter request should be final. | 41 |
| Parameter response should be final. | 42 |
| Line is longer than 80 characters (found 82). | 45 |
| Line is longer than 80 characters (found 82). | 52 |
| Line is longer than 80 characters (found 102). | 53 |
| Line is longer than 80 characters (found 115). | 54 |
| Line is longer than 80 characters (found 103). | 60 |
| Line is longer than 80 characters (found 148). | 64 |
| 'if' is not followed by whitespace. | 68 |
| Line is longer than 80 characters (found 159). | 69 |
| Line is longer than 80 characters (found 91). | 71 |
| Line is longer than 80 characters (found 108). | 72 |
| Line is longer than 80 characters (found 90). | 77 |
| Line is longer than 80 characters (found 109). | 78 |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| Using the '.*' form of import should be avoided - uk.ac.ebi.intenz.webapp.dtos.*. | 11 |
| Missing a Javadoc comment. | 28 |
| 'static' modifier out of order with the JLS suggestions. | 28 |
| Missing a Javadoc comment. | 30 |
| Line contains a tab character. | 31 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 33 |
| Parameter mapping should be final. | 34 |
| Parameter form should be final. | 35 |
| Parameter request should be final. | 36 |
| Parameter response should be final. | 37 |
| Line is longer than 80 characters (found 85). | 40 |
| Line is longer than 80 characters (found 101). | 41 |
| Comment matches to-do format 'TODO:'. | 43 |
| Line is longer than 80 characters (found 82). | 43 |
| Line is longer than 80 characters (found 81). | 47 |
| Line is longer than 80 characters (found 126). | 56 |
| Missing a Javadoc comment. | 56 |
| Parameter enzymeClass should be final. | 56 |
| Parameter form should be final. | 56 |
| Parameter encoding should be final. | 56 |
| Parameter encodingType should be final. | 56 |
| Line is longer than 80 characters (found 86). | 61 |
| '?' is not preceded with whitespace. | 62 |
| '?' should be on a new line. | 62 |
| Avoid inline conditionals. | 62 |
| ':' should be on a new line. | 63 |
| Line is longer than 80 characters (found 111). | 64 |
| Line is longer than 80 characters (found 91). | 72 |
| Violation | Message | Line |
|---|---|---|
| Unused import - org.apache.struts.util.TokenProcessor. | 8 |
| Unused import - org.apache.struts.Globals. | 9 |
| Unused import - org.apache.struts.taglib.html.Constants. | 10 |
| Unused import - uk.ac.ebi.intenz.domain.constants.EnzymeNameTypeConstant. | 12 |
| Using the '.*' form of import should be avoided - uk.ac.ebi.intenz.domain.enzyme.*. | 13 |
| Unused import - uk.ac.ebi.intenz.domain.history.HistoryGraph. | 14 |
| Unused import - uk.ac.ebi.intenz.domain.reference.Book. | 15 |
| Unused import - uk.ac.ebi.intenz.domain.reference.Journal. | 16 |
| Unused import - uk.ac.ebi.intenz.domain.reference.Patent. | 17 |
| Unused import - uk.ac.ebi.intenz.domain.reference.Reference. | 18 |
| Using the '.*' form of import should be avoided - uk.ac.ebi.intenz.webapp.dtos.*. | 19 |
| Duplicate import to line 20 - uk.ac.ebi.intenz.webapp.utilities.IntEnzUtilities. | 21 |
| Unused import - java.util.Iterator. | 28 |
| Unused import - java.util.SortedSet. | 30 |
| Missing a Javadoc comment. | 39 |
| 'static' modifier out of order with the JLS suggestions. | 39 |
| Missing a Javadoc comment. | 41 |
| Line contains a tab character. | 42 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 44 |
| Missing a Javadoc comment. | 44 |
| Parameter mapping should be final. | 44 |
| Parameter form should be final. | 45 |
| Parameter request should be final. | 46 |
| Parameter response should be final. | 47 |
| Line is longer than 80 characters (found 85). | 50 |
| Line is longer than 80 characters (found 101). | 51 |
| Comment matches to-do format 'TODO:'. | 53 |
| Line is longer than 80 characters (found 82). | 53 |
| Line is longer than 80 characters (found 86). | 57 |
| Line is longer than 80 characters (found 114). | 62 |
| Missing a Javadoc comment. | 62 |
| Parameter result should be final. | 62 |
| Parameter form should be final. | 62 |
| Parameter encoding should be final. | 62 |
| Parameter encodingType should be final. | 62 |
| 'if' is not followed by whitespace. | 74 |
| Line is longer than 80 characters (found 91). | 75 |
| Line is longer than 80 characters (found 144). | 83 |
| Missing a Javadoc comment. | 90 |
| Parameter enzymeEntry should be final. | 90 |
| '{' is not preceded with whitespace. | 90 |
| Line contains a tab character. | 92 |
| Violation | Message | Line |
|---|---|---|
| Using the '.*' form of import should be avoided - uk.ac.ebi.intenz.domain.enzyme.*. | 20 |
| Using the '.*' form of import should be avoided - uk.ac.ebi.intenz.webapp.dtos.*. | 28 |
| Line is longer than 80 characters (found 94). | 45 |
| Missing a Javadoc comment. | 45 |
| Missing a Javadoc comment. | 47 |
| Line contains a tab character. | 48 |
| Missing a Javadoc comment. | 49 |
| Line is longer than 80 characters (found 84). | 50 |
| Missing a Javadoc comment. | 50 |
| Line is longer than 80 characters (found 92). | 51 |
| Missing a Javadoc comment. | 51 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 53 |
| Parameter mapping should be final. | 54 |
| Parameter form should be final. | 55 |
| Parameter request should be final. | 56 |
| Parameter response should be final. | 57 |
| Line is longer than 80 characters (found 86). | 60 |
| Line is longer than 80 characters (found 101). | 61 |
| Line is longer than 80 characters (found 81). | 62 |
| Line is longer than 80 characters (found 82). | 64 |
| Line is longer than 80 characters (found 110). | 66 |
| 'if' construct must use '{}'s. | 69 |
| Line is longer than 80 characters (found 114). | 69 |
| Avoid inline conditionals. | 69 |
| 'if' construct must use '{}'s. | 80 |
| Line is longer than 80 characters (found 111). | 80 |
| 'if' construct must use '{}'s. | 81 |
| Line is longer than 80 characters (found 119). | 81 |
| Missing a Javadoc comment. | 85 |
| '(' is preceded with whitespace. | 85 |
| Parameter request should be final. | 85 |
| 'if' construct must use '{}'s. | 87 |
| Line is longer than 80 characters (found 98). | 93 |
| Missing a Javadoc comment. | 93 |
| Parameter enzymeEntry should be final. | 93 |
| Parameter form should be final. | 93 |
| Parameter encoding should be final. | 93 |
| Line is longer than 80 characters (found 94). | 94 |
| Parameter encodingType should be final. | 94 |
| Parameter translate should be final. | 94 |
| Parameter xcharsView should be final. | 94 |
| Line is longer than 80 characters (found 108). | 101 |
| Line is longer than 80 characters (found 111). | 102 |
| Line is longer than 80 characters (found 102). | 103 |
| Line is longer than 80 characters (found 120). | 104 |
| Line is longer than 80 characters (found 108). | 105 |
| Line is longer than 80 characters (found 124). | 106 |
| Line is longer than 80 characters (found 130). | 107 |
| Line is longer than 80 characters (found 94). | 108 |
| Line is longer than 80 characters (found 100). | 109 |
| Line is longer than 80 characters (found 81). | 110 |
| Line is longer than 80 characters (found 86). | 111 |
| Line is longer than 80 characters (found 105). | 112 |
| Line is longer than 80 characters (found 94). | 114 |
| Line is longer than 80 characters (found 81). | 115 |
| Line is longer than 80 characters (found 94). | 116 |
| Line is longer than 80 characters (found 123). | 120 |
| Line is longer than 80 characters (found 118). | 121 |
| '{' is not preceded with whitespace. | 122 |
| Line is longer than 80 characters (found 139). | 123 |
| 'if' construct must use '{}'s. | 124 |
| Line is longer than 80 characters (found 106). | 129 |
| 'if' construct must use '{}'s. | 131 |
| 'if' construct must use '{}'s. | 132 |
| Line is longer than 80 characters (found 82). | 132 |
| Line is longer than 80 characters (found 104). | 133 |
| 'if' construct must use '{}'s. | 135 |
| 'if' construct must use '{}'s. | 136 |
| Line has trailing spaces. | 137 |
| Line is longer than 80 characters (found 95). | 143 |
| Line is longer than 80 characters (found 104). | 145 |
| '+' should be on a new line. | 145 |
| Line has trailing spaces. | 150 |
| Line is longer than 80 characters (found 113). | 151 |
| Missing a Javadoc comment. | 151 |
| Parameter names should be final. | 151 |
| Parameter encoding should be final. | 151 |
| Parameter encodingType should be final. | 151 |
| Parameter translate should be final. | 151 |
| 'if' construct must use '{}'s. | 160 |
| Line is longer than 80 characters (found 121). | 161 |
| 'else' construct must use '{}'s. | 162 |
| Line is longer than 80 characters (found 99). | 163 |
| Line is longer than 80 characters (found 81). | 169 |
| Line is longer than 80 characters (found 124). | 172 |
| Line is longer than 80 characters (found 116). | 180 |
| Missing a Javadoc comment. | 180 |
| Parameter reactions should be final. | 180 |
| Parameter encoding should be final. | 180 |
| Parameter encodingType should be final. | 180 |
| Parameter translate should be final. | 181 |
| 'if' construct must use '{}'s. | 187 |
| Line is longer than 80 characters (found 100). | 191 |
| Line is longer than 80 characters (found 102). | 192 |
| '{' is not preceded with whitespace. | 193 |
| Line is longer than 80 characters (found 83). | 199 |
| Line is longer than 80 characters (found 87). | 204 |
| Line is longer than 80 characters (found 89). | 205 |
| Line is longer than 80 characters (found 99). | 215 |
| Missing a Javadoc comment. | 215 |
| Parameter systematicName should be final. | 215 |
| Parameter encoding should be final. | 215 |
| Parameter encodingType should be final. | 216 |
| Line is longer than 80 characters (found 88). | 222 |
| Line is longer than 80 characters (found 88). | 224 |
| Line is longer than 80 characters (found 90). | 225 |
| Line is longer than 80 characters (found 83). | 226 |
| Line is longer than 80 characters (found 105). | 228 |
| Line is longer than 80 characters (found 87). | 231 |
| Line is longer than 80 characters (found 87). | 233 |
| Line is longer than 80 characters (found 89). | 234 |
| Line is longer than 80 characters (found 83). | 235 |
| Line is longer than 80 characters (found 95). | 240 |
| Missing a Javadoc comment. | 240 |
| Parameter cofactors should be final. | 240 |
| Parameter encoding should be final. | 240 |
| Line contains a tab character. | 241 |
| Parameter encodingType should be final. | 241 |
| Parameter translate should be final. | 241 |
| Line contains a tab character. | 249 |
| Line contains a tab character. | 250 |
| '{' is not preceded with whitespace. | 250 |
| Line contains a tab character. | 251 |
| Line contains a tab character. | 252 |
| Line contains a tab character. | 253 |
| Line contains a tab character. | 254 |
| Line contains a tab character. | 255 |
| Line contains a tab character. | 256 |
| Line contains a tab character. | 257 |
| '{' is not preceded with whitespace. | 257 |
| Line contains a tab character. | 258 |
| Line contains a tab character. | 259 |
| Line contains a tab character. | 260 |
| Line contains a tab character. | 261 |
| Line contains a tab character. | 262 |
| Line contains a tab character. | 263 |
| Line contains a tab character. | 264 |
| Line contains a tab character. | 265 |
| Line is longer than 80 characters (found 81). | 266 |
| Line contains a tab character. | 266 |
| Line contains a tab character. | 267 |
| Line contains a tab character. | 268 |
| Line contains a tab character. | 269 |
| '{' is not preceded with whitespace. | 269 |
| Line contains a tab character. | 270 |
| 'if' construct must use '{}'s. | 271 |
| Line contains a tab character. | 271 |
| 'else' construct must use '{}'s. | 272 |
| Line contains a tab character. | 272 |
| Line contains a tab character. | 273 |
| Line contains a tab character. | 274 |
| Line contains a tab character. | 275 |
| Line contains a tab character. | 276 |
| Line contains a tab character. | 277 |
| Line has trailing spaces. | 282 |
| Line is longer than 80 characters (found 112). | 283 |
| Missing a Javadoc comment. | 283 |
| Parameter links should be final. | 283 |
| Parameter getUniProtLinksOnly should be final. | 283 |
| Parameter ec should be final. | 283 |
| Parameter encoding should be final. | 283 |
| Parameter encodingType should be final. | 284 |
| 'if' construct must use '{}'s. | 293 |
| '&&' should be on a new line. | 293 |
| Line is longer than 80 characters (found 122). | 294 |
| Line is longer than 80 characters (found 91). | 297 |
| Line is longer than 80 characters (found 92). | 298 |
| Line is longer than 80 characters (found 81). | 306 |
| 'if' construct must use '{}'s. | 307 |
| Line is longer than 80 characters (found 90). | 308 |
| Line contains a tab character. | 308 |
| Line is longer than 80 characters (found 103). | 311 |
| 'if' construct must use '{}'s. | 317 |
| Line is longer than 80 characters (found 109). | 317 |
| Avoid inline conditionals. | 321 |
| Line is longer than 80 characters (found 104). | 324 |
| Missing a Javadoc comment. | 324 |
| Parameter comments should be final. | 324 |
| Parameter encoding should be final. | 324 |
| Parameter encodingType should be final. | 324 |
| Line is longer than 80 characters (found 104). | 333 |
| '{' is not preceded with whitespace. | 334 |
| Line is longer than 80 characters (found 94). | 335 |
| Line is longer than 80 characters (found 131). | 337 |
| Line is longer than 80 characters (found 106). | 352 |
| Missing a Javadoc comment. | 352 |
| Parameter references should be final. | 352 |
| Parameter encoding should be final. | 352 |
| Parameter encodingType should be final. | 352 |
| Line is longer than 80 characters (found 90). | 362 |
| Line is longer than 80 characters (found 86). | 364 |
| Line is longer than 80 characters (found 90). | 376 |
| Line is longer than 80 characters (found 87). | 387 |
| Line is longer than 80 characters (found 92). | 391 |
| Line is longer than 80 characters (found 90). | 392 |
| Line is longer than 80 characters (found 91). | 395 |
| Line is longer than 80 characters (found 101). | 397 |
| Line is longer than 80 characters (found 94). | 401 |
| Violation | Message | Line |
|---|---|---|
| Unused import - uk.ac.ebi.intenz.domain.enzyme.DataComment. | 20 |
| Unused import - uk.ac.ebi.rhea.domain.Status. | 32 |
| Unused import - uk.ac.ebi.intenz.webapp.dtos.DataCommentDTO. | 34 |
| Missing a Javadoc comment. | 52 |
| Line contains a tab character. | 53 |
| Missing a Javadoc comment. | 54 |
| Line is longer than 80 characters (found 96). | 55 |
| Missing a Javadoc comment. | 55 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 57 |
| Parameter mapping should be final. | 58 |
| Parameter form should be final. | 59 |
| Parameter request should be final. | 60 |
| Parameter response should be final. | 61 |
| Line is longer than 80 characters (found 85). | 64 |
| Line is longer than 80 characters (found 101). | 65 |
| 'if' construct must use '{}'s. | 68 |
| Line is longer than 80 characters (found 104). | 68 |
| 'if' is not followed by whitespace. | 68 |
| Line is longer than 80 characters (found 97). | 73 |
| Missing a Javadoc comment. | 73 |
| Parameter enzymeEntry should be final. | 73 |
| Parameter form should be final. | 73 |
| Parameter encoding should be final. | 73 |
| Parameter encodingType should be final. | 74 |
| Line is longer than 80 characters (found 102). | 79 |
| Line is longer than 80 characters (found 116). | 80 |
| Line is longer than 80 characters (found 96). | 81 |
| Line is longer than 80 characters (found 111). | 82 |
| Line is longer than 80 characters (found 122). | 83 |
| Line is longer than 80 characters (found 99). | 84 |
| Line is longer than 80 characters (found 105). | 85 |
| Line is longer than 80 characters (found 105). | 87 |
| Line is longer than 80 characters (found 153). | 88 |
| Line is longer than 80 characters (found 129). | 89 |
| Line is longer than 80 characters (found 81). | 90 |
| Line is longer than 80 characters (found 94). | 91 |
| 'if' construct must use '{}'s. | 92 |
| '&&' should be on a new line. | 92 |
| Line is longer than 80 characters (found 83). | 94 |
| 'if' construct must use '{}'s. | 95 |
| Line is longer than 80 characters (found 91). | 95 |
| Line is longer than 80 characters (found 93). | 96 |
| Line is longer than 80 characters (found 96). | 100 |
| Missing a Javadoc comment. | 100 |
| Parameter names should be final. | 100 |
| Parameter encoding should be final. | 100 |
| Parameter encodingType should be final. | 100 |
| Line is longer than 80 characters (found 99). | 110 |
| Line is longer than 80 characters (found 134). | 114 |
| Line is longer than 80 characters (found 118). | 123 |
| Missing a Javadoc comment. | 123 |
| Parameter reactions should be final. | 123 |
| Parameter encoding should be final. | 123 |
| Parameter encodingType should be final. | 123 |
| 'if' construct must use '{}'s. | 129 |
| 'if' construct must use '{}'s. | 131 |
| Line contains a tab character. | 132 |
| Line is longer than 80 characters (found 88). | 133 |
| Line is longer than 80 characters (found 85). | 135 |
| Line is longer than 80 characters (found 104). | 137 |
| Line is longer than 80 characters (found 99). | 147 |
| Missing a Javadoc comment. | 147 |
| Parameter systematicName should be final. | 147 |
| Parameter encoding should be final. | 147 |
| Parameter encodingType should be final. | 148 |
| Line is longer than 80 characters (found 83). | 151 |
| Line is longer than 80 characters (found 105). | 153 |
| Line is longer than 80 characters (found 112). | 161 |
| Missing a Javadoc comment. | 161 |
| Parameter links should be final. | 161 |
| Parameter ec should be final. | 161 |
| Parameter encoding should be final. | 161 |
| Parameter encodingType should be final. | 161 |
| Line is longer than 80 characters (found 93). | 171 |
| Line is longer than 80 characters (found 94). | 172 |
| Line is longer than 80 characters (found 88). | 175 |
| 'if' construct must use '{}'s. | 178 |
| Line is longer than 80 characters (found 96). | 179 |
| Line contains a tab character. | 179 |
| Line is longer than 80 characters (found 102). | 187 |
| Missing a Javadoc comment. | 187 |
| Parameter comments should be final. | 187 |
| Parameter encoding should be final. | 187 |
| Parameter encodingType should be final. | 187 |
| Line is longer than 80 characters (found 106). | 197 |
| Line is longer than 80 characters (found 128). | 198 |
| Line is longer than 80 characters (found 106). | 208 |
| Missing a Javadoc comment. | 208 |
| Parameter references should be final. | 208 |
| Parameter encoding should be final. | 208 |
| Parameter encodingType should be final. | 208 |
| Line is longer than 80 characters (found 92). | 219 |
| Line is longer than 80 characters (found 88). | 220 |
| Line is longer than 80 characters (found 92). | 228 |
| Line is longer than 80 characters (found 89). | 238 |
| Line is longer than 80 characters (found 94). | 241 |
| Line is longer than 80 characters (found 92). | 242 |
| Line is longer than 80 characters (found 93). | 244 |
| Line is longer than 80 characters (found 103). | 245 |
| Line is longer than 80 characters (found 96). | 249 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 84). | 21 |
| Missing a Javadoc comment. | 21 |
| 'static' modifier out of order with the JLS suggestions. | 21 |
| Missing a Javadoc comment. | 23 |
| Line is longer than 80 characters (found 81). | 24 |
| Line contains a tab character. | 24 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 26 |
| Missing a Javadoc comment. | 26 |
| Parameter mapping should be final. | 26 |
| Parameter form should be final. | 27 |
| Parameter request should be final. | 28 |
| Parameter response should be final. | 29 |
| Line is longer than 80 characters (found 157). | 31 |
| Violation | Message | Line |
|---|---|---|
| Unused import - uk.ac.ebi.rhea.domain.Status. | 18 |
| Missing a Javadoc comment. | 37 |
| Line contains a tab character. | 38 |
| Line is longer than 80 characters (found 82). | 39 |
| Missing a Javadoc comment. | 39 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 41 |
| Parameter mapping should be final. | 42 |
| Parameter form should be final. | 43 |
| Parameter request should be final. | 44 |
| Parameter response should be final. | 45 |
| Line is longer than 80 characters (found 85). | 48 |
| Line is longer than 80 characters (found 101). | 49 |
| Line is longer than 80 characters (found 99). | 50 |
| Line is longer than 80 characters (found 157). | 51 |
| Line is longer than 80 characters (found 93). | 55 |
| Missing a Javadoc comment. | 55 |
| Parameter enzymeDTO should be final. | 55 |
| Parameter form should be final. | 55 |
| Parameter encoding should be final. | 55 |
| Parameter encodingType should be final. | 56 |
| Line is longer than 80 characters (found 100). | 61 |
| Line is longer than 80 characters (found 103). | 62 |
| Line is longer than 80 characters (found 114). | 63 |
| Line is longer than 80 characters (found 94). | 64 |
| Line is longer than 80 characters (found 107). | 65 |
| Line is longer than 80 characters (found 97). | 66 |
| Line is longer than 80 characters (found 103). | 67 |
| Line is longer than 80 characters (found 96). | 73 |
| Missing a Javadoc comment. | 73 |
| Parameter names should be final. | 73 |
| Parameter encoding should be final. | 73 |
| Parameter encodingType should be final. | 73 |
| Line is longer than 80 characters (found 81). | 81 |
| Line is longer than 80 characters (found 91). | 83 |
| Line is longer than 80 characters (found 104). | 95 |
| Missing a Javadoc comment. | 95 |
| Parameter reactions should be final. | 95 |
| Parameter encoding should be final. | 95 |
| Parameter encodingType should be final. | 95 |
| 'if' construct must use '{}'s. | 103 |
| Line contains a tab character. | 103 |
| Line contains a tab character. | 104 |
| Line is longer than 80 characters (found 94). | 107 |
| Line is longer than 80 characters (found 102). | 109 |
| Line is longer than 80 characters (found 111). | 119 |
| Missing a Javadoc comment. | 119 |
| Parameter intEnzSystematicNameDTO should be final. | 119 |
| Parameter encoding should be final. | 119 |
| Parameter encodingType should be final. | 120 |
| Line is longer than 80 characters (found 101). | 122 |
| Line is longer than 80 characters (found 107). | 129 |
| Missing a Javadoc comment. | 129 |
| Parameter links should be final. | 129 |
| Parameter ec should be final. | 129 |
| Parameter encoding should be final. | 129 |
| Parameter encodingType should be final. | 129 |
| Line is longer than 80 characters (found 87). | 137 |
| Line is longer than 80 characters (found 97). | 142 |
| Line is longer than 80 characters (found 102). | 153 |
| Missing a Javadoc comment. | 153 |
| Parameter comments should be final. | 153 |
| Parameter encoding should be final. | 153 |
| Parameter encodingType should be final. | 153 |
| Line is longer than 80 characters (found 84). | 161 |
| Line is longer than 80 characters (found 106). | 163 |
| Line is longer than 80 characters (found 133). | 164 |
| Line is longer than 80 characters (found 106). | 174 |
| Missing a Javadoc comment. | 174 |
| Parameter references should be final. | 174 |
| Parameter encoding should be final. | 174 |
| Parameter encodingType should be final. | 174 |
| Line is longer than 80 characters (found 101). | 185 |
| Line is longer than 80 characters (found 97). | 186 |
| Line is longer than 80 characters (found 103). | 193 |
| Line is longer than 80 characters (found 103). | 202 |
| Line is longer than 80 characters (found 103). | 205 |
| Line is longer than 80 characters (found 101). | 206 |
| Line is longer than 80 characters (found 107). | 208 |
| Line is longer than 80 characters (found 117). | 209 |
| Violation | Message | Line |
|---|---|---|
| Unused import - uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry. | 17 |
| Unused import - uk.ac.ebi.intenz.tools.sib.helper.SibEntryHelper. | 19 |
| Using the '.*' form of import should be avoided - uk.ac.ebi.intenz.webapp.dtos.*. | 26 |
| Line is longer than 80 characters (found 95). | 42 |
| Missing a Javadoc comment. | 42 |
| Missing a Javadoc comment. | 44 |
| 'static' modifier out of order with the JLS suggestions. | 44 |
| Missing a Javadoc comment. | 46 |
| Line contains a tab character. | 47 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 49 |
| '(' is preceded with whitespace. | 50 |
| Parameter mapping should be final. | 50 |
| Parameter form should be final. | 51 |
| Parameter request should be final. | 52 |
| Line is longer than 80 characters (found 81). | 53 |
| Parameter response should be final. | 53 |
| Line is longer than 80 characters (found 87). | 56 |
| Line is longer than 80 characters (found 103). | 57 |
| Line is longer than 80 characters (found 115). | 59 |
| Line is longer than 80 characters (found 135). | 61 |
| Line is longer than 80 characters (found 95). | 65 |
| Missing a Javadoc comment. | 65 |
| '(' is preceded with whitespace. | 65 |
| Parameter enzymeDTO should be final. | 65 |
| Parameter form should be final. | 65 |
| Parameter encoding should be final. | 65 |
| Line is longer than 80 characters (found 98). | 66 |
| Parameter encodingType should be final. | 66 |
| Parameter translate should be final. | 66 |
| Line is longer than 80 characters (found 103). | 68 |
| Line contains a tab character. | 72 |
| Line is longer than 80 characters (found 101). | 73 |
| Line contains a tab character. | 73 |
| Line is longer than 80 characters (found 123). | 80 |
| Expected an @return tag. | 90 |
| Line is longer than 80 characters (found 121). | 90 |
| '(' is preceded with whitespace. | 90 |
| Parameter enzymeDTO should be final. | 90 |
| Expected @param tag for 'enzymeDTO'. | 90 |
| Parameter encoding should be final. | 90 |
| Expected @param tag for 'encoding'. | 90 |
| Parameter encodingType should be final. | 90 |
| Expected @param tag for 'encodingType'. | 90 |
| Line is longer than 80 characters (found 87). | 91 |
| Parameter translate should be final. | 91 |
| Expected @param tag for 'translate'. | 91 |
| Expected @throws tag for 'SPTRException'. | 91 |
| '(' is followed by whitespace. | 99 |
| ')' is preceded with whitespace. | 99 |
| '(' is followed by whitespace. | 101 |
| ')' is preceded with whitespace. | 101 |
| 'if' construct must use '{}'s. | 102 |
| '(' is followed by whitespace. | 102 |
| ')' is preceded with whitespace. | 102 |
| Line is longer than 80 characters (found 121). | 104 |
| 'else' construct must use '{}'s. | 105 |
| Line is longer than 80 characters (found 108). | 106 |
| '(' is followed by whitespace. | 117 |
| ')' is preceded with whitespace. | 117 |
| '(' is followed by whitespace. | 119 |
| ')' is preceded with whitespace. | 119 |
| 'if' construct must use '{}'s. | 121 |
| '(' is followed by whitespace. | 121 |
| ')' is preceded with whitespace. | 121 |
| Line is longer than 80 characters (found 119). | 123 |
| 'else' construct must use '{}'s. | 124 |
| Line is longer than 80 characters (found 105). | 125 |
| Line is longer than 80 characters (found 99). | 129 |
| Line is longer than 80 characters (found 112). | 130 |
| ')' is preceded with whitespace. | 130 |
| '(' is followed by whitespace. | 134 |
| ')' is preceded with whitespace. | 134 |
| Line contains a tab character. | 135 |
| 'if' construct must use '{}'s. | 136 |
| Line contains a tab character. | 136 |
| Line contains a tab character. | 137 |
| Line is longer than 80 characters (found 83). | 138 |
| Line contains a tab character. | 138 |
| Line contains a tab character. | 139 |
| '(' is followed by whitespace. | 139 |
| ')' is preceded with whitespace. | 139 |
| Line is longer than 80 characters (found 86). | 140 |
| Line contains a tab character. | 140 |
| Line contains a tab character. | 141 |
| ',' is not followed by whitespace. | 141 |
| ',' is not followed by whitespace. | 141 |
| Line contains a tab character. | 142 |
| ',' is not followed by whitespace. | 142 |
| ',' is not followed by whitespace. | 142 |
| 'if' construct must use '{}'s. | 143 |
| Line is longer than 80 characters (found 83). | 143 |
| Line contains a tab character. | 143 |
| Line is longer than 80 characters (found 93). | 144 |
| Line contains a tab character. | 144 |
| Line contains a tab character. | 145 |
| Line is longer than 80 characters (found 88). | 152 |
| '(' is followed by whitespace. | 152 |
| ')' is preceded with whitespace. | 152 |
| Line contains a tab character. | 153 |
| Line contains a tab character. | 154 |
| '(' is followed by whitespace. | 154 |
| ')' is preceded with whitespace. | 154 |
| Line contains a tab character. | 155 |
| '?' is not preceded with whitespace. | 155 |
| '?' should be on a new line. | 155 |
| Avoid inline conditionals. | 155 |
| Line is longer than 80 characters (found 108). | 156 |
| Line contains a tab character. | 156 |
| ':' is not preceded with whitespace. | 156 |
| ':' should be on a new line. | 156 |
| Line contains a tab character. | 157 |
| Line contains a tab character. | 158 |
| Line is longer than 80 characters (found 111). | 159 |
| Line contains a tab character. | 159 |
| Line contains a tab character. | 160 |
| 'if' construct must use '{}'s. | 161 |
| Line is longer than 80 characters (found 83). | 161 |
| Line contains a tab character. | 161 |
| '(' is followed by whitespace. | 161 |
| ')' is preceded with whitespace. | 161 |
| Line contains a tab character. | 162 |
| Line contains a tab character. | 163 |
| Line contains a tab character. | 164 |
| '(' is followed by whitespace. | 171 |
| ')' is preceded with whitespace. | 171 |
| '(' is followed by whitespace. | 173 |
| ')' is preceded with whitespace. | 173 |
| Line is longer than 80 characters (found 126). | 175 |
| Line is longer than 80 characters (found 106). | 176 |
| '(' is followed by whitespace. | 184 |
| ';' is followed by whitespace. | 184 |
| Line is longer than 80 characters (found 103). | 186 |
| '(' is followed by whitespace. | 186 |
| '(' is followed by whitespace. | 186 |
| ')' is preceded with whitespace. | 186 |
| '&&' should be on a new line. | 186 |
| Line is longer than 80 characters (found 88). | 187 |
| ')' is preceded with whitespace. | 187 |
| Line is longer than 80 characters (found 88). | 188 |
| Name 'DICrossReference' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 188 |
| Line is longer than 80 characters (found 107). | 191 |
| '(' is followed by whitespace. | 191 |
| '(' is followed by whitespace. | 191 |
| ')' is preceded with whitespace. | 191 |
| '&&' should be on a new line. | 191 |
| Line is longer than 80 characters (found 88). | 192 |
| ')' is preceded with whitespace. | 192 |
| Line is longer than 80 characters (found 88). | 193 |
| Name 'PRCrossReference' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 193 |
| Line is longer than 80 characters (found 109). | 196 |
| '(' is followed by whitespace. | 196 |
| '(' is followed by whitespace. | 196 |
| ')' is preceded with whitespace. | 196 |
| '&&' should be on a new line. | 196 |
| Line is longer than 80 characters (found 88). | 197 |
| ')' is preceded with whitespace. | 197 |
| Line is longer than 80 characters (found 88). | 198 |
| Name 'DRCrossReference' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 198 |
| '(' is followed by whitespace. | 202 |
| ')' is preceded with whitespace. | 202 |
| Line is longer than 80 characters (found 102). | 209 |
| Missing a Javadoc comment. | 209 |
| '(' is preceded with whitespace. | 209 |
| Parameter enzymeLinkDTO should be final. | 209 |
| Line is longer than 80 characters (found 96). | 212 |
| Line is longer than 80 characters (found 105). | 214 |
| '(' is followed by whitespace. | 215 |
| ')' is preceded with whitespace. | 215 |
| Line is longer than 80 characters (found 102). | 221 |
| Missing a Javadoc comment. | 221 |
| '(' is preceded with whitespace. | 221 |
| Parameter enzymeLinkDTO should be final. | 221 |
| Line is longer than 80 characters (found 100). | 224 |
| '(' is followed by whitespace. | 226 |
| ')' is preceded with whitespace. | 226 |
| Line is longer than 80 characters (found 102). | 232 |
| Missing a Javadoc comment. | 232 |
| '(' is preceded with whitespace. | 232 |
| Parameter enzymeLinkDTO should be final. | 232 |
| Line is longer than 80 characters (found 102). | 235 |
| Line is longer than 80 characters (found 105). | 237 |
| '(' is followed by whitespace. | 238 |
| ')' is preceded with whitespace. | 238 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 30 |
| Missing a Javadoc comment. | 32 |
| Line contains a tab character. | 33 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 35 |
| Missing a Javadoc comment. | 35 |
| Parameter mapping should be final. | 35 |
| Parameter form should be final. | 36 |
| Parameter request should be final. | 37 |
| Parameter response should be final. | 38 |
| Line is longer than 80 characters (found 85). | 41 |
| Line is longer than 80 characters (found 101). | 42 |
| Line is longer than 80 characters (found 93). | 44 |
| Line is longer than 80 characters (found 97). | 48 |
| Missing a Javadoc comment. | 48 |
| Parameter enzymeEntry should be final. | 48 |
| Parameter form should be final. | 48 |
| Parameter encoding should be final. | 48 |
| Parameter encodingType should be final. | 49 |
| Line is longer than 80 characters (found 107). | 52 |
| Line contains a tab character. | 58 |
| Line is longer than 80 characters (found 99). | 59 |
| Line contains a tab character. | 59 |
| Line is longer than 80 characters (found 84). | 60 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 36 |
| Line contains a tab character. | 37 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 39 |
| Missing a Javadoc comment. | 39 |
| Parameter mapping should be final. | 39 |
| Parameter form should be final. | 40 |
| Parameter request should be final. | 41 |
| Parameter response should be final. | 42 |
| Line is longer than 80 characters (found 85). | 45 |
| Line is longer than 80 characters (found 101). | 46 |
| Comment matches to-do format 'TODO:'. | 48 |
| Line is longer than 80 characters (found 82). | 48 |
| Line is longer than 80 characters (found 99). | 52 |
| Line is longer than 80 characters (found 109). | 61 |
| Missing a Javadoc comment. | 61 |
| Parameter enzymeSubSubclass should be final. | 61 |
| Parameter form should be final. | 61 |
| Parameter encoding should be final. | 61 |
| Parameter encodingType should be final. | 62 |
| Line is longer than 80 characters (found 98). | 67 |
| Line is longer than 80 characters (found 112). | 68 |
| Line is longer than 80 characters (found 108). | 69 |
| Line is longer than 80 characters (found 114). | 71 |
| Line is longer than 80 characters (found 118). | 72 |
| Line is longer than 80 characters (found 91). | 86 |
| Line is longer than 80 characters (found 107). | 92 |
| Line is longer than 80 characters (found 88). | 93 |
| Line is longer than 80 characters (found 83). | 94 |
| Line is longer than 80 characters (found 96). | 95 |
| 'if' construct must use '{}'s. | 96 |
| '&&' should be on a new line. | 96 |
| Line is longer than 80 characters (found 136). | 99 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 29 |
| 'static' modifier out of order with the JLS suggestions. | 29 |
| Missing a Javadoc comment. | 31 |
| Line contains a tab character. | 32 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 34 |
| Missing a Javadoc comment. | 34 |
| Parameter mapping should be final. | 34 |
| Parameter form should be final. | 35 |
| Parameter request should be final. | 36 |
| Parameter response should be final. | 37 |
| Line is longer than 80 characters (found 85). | 40 |
| Line is longer than 80 characters (found 101). | 41 |
| Comment matches to-do format 'TODO:'. | 43 |
| Line is longer than 80 characters (found 82). | 43 |
| Line is longer than 80 characters (found 90). | 47 |
| Line is longer than 80 characters (found 103). | 56 |
| Missing a Javadoc comment. | 56 |
| Parameter enzymeSubclass should be final. | 56 |
| Parameter form should be final. | 56 |
| Parameter encoding should be final. | 56 |
| Parameter encodingType should be final. | 57 |
| Line is longer than 80 characters (found 92). | 62 |
| Line is longer than 80 characters (found 82). | 63 |
| '?' is not preceded with whitespace. | 63 |
| '?' should be on a new line. | 63 |
| Avoid inline conditionals. | 63 |
| ':' should be on a new line. | 64 |
| Line is longer than 80 characters (found 114). | 65 |
| Line is longer than 80 characters (found 87). | 72 |
| Line is longer than 80 characters (found 94). | 75 |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| Line is longer than 80 characters (found 98). | 18 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 18 |
| Missing a Javadoc comment. | 18 |
| Parameter mapping should be final. | 18 |
| Parameter form should be final. | 18 |
| Parameter request should be final. | 18 |
| Parameter response should be final. | 19 |
| Line is longer than 80 characters (found 83). | 20 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 98). | 18 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 18 |
| Missing a Javadoc comment. | 18 |
| Parameter mapping should be final. | 18 |
| Parameter form should be final. | 18 |
| Parameter request should be final. | 18 |
| Parameter response should be final. | 19 |
| Line is longer than 80 characters (found 85). | 20 |
| Line is longer than 80 characters (found 104). | 21 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 98). | 18 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 18 |
| Missing a Javadoc comment. | 18 |
| Parameter mapping should be final. | 18 |
| Parameter form should be final. | 18 |
| Parameter request should be final. | 18 |
| Parameter response should be final. | 19 |
| Line is longer than 80 characters (found 85). | 20 |
| Line is longer than 80 characters (found 113). | 21 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 98). | 19 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 19 |
| Missing a Javadoc comment. | 19 |
| Parameter mapping should be final. | 19 |
| Parameter form should be final. | 19 |
| Parameter request should be final. | 19 |
| Parameter response should be final. | 20 |
| Line contains a tab character. | 21 |
| '{' is not preceded with whitespace. | 21 |
| Line contains a tab character. | 22 |
| Line contains a tab character. | 23 |
| Line contains a tab character. | 24 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 98). | 18 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 18 |
| Missing a Javadoc comment. | 18 |
| Parameter mapping should be final. | 18 |
| Parameter form should be final. | 18 |
| Parameter request should be final. | 18 |
| Parameter response should be final. | 19 |
| Line is longer than 80 characters (found 85). | 20 |
| Line is longer than 80 characters (found 114). | 21 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 98). | 18 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 18 |
| Missing a Javadoc comment. | 18 |
| Parameter mapping should be final. | 18 |
| Parameter form should be final. | 18 |
| Parameter request should be final. | 18 |
| Parameter response should be final. | 19 |
| Line is longer than 80 characters (found 85). | 20 |
| Line is longer than 80 characters (found 105). | 21 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 98). | 18 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 18 |
| Missing a Javadoc comment. | 18 |
| Parameter mapping should be final. | 18 |
| Parameter form should be final. | 18 |
| Parameter request should be final. | 18 |
| Parameter response should be final. | 19 |
| Line is longer than 80 characters (found 85). | 20 |
| Line is longer than 80 characters (found 114). | 21 |
| Line has trailing spaces. | 22 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 32 |
| Line contains a tab character. | 33 |
| Missing a Javadoc comment. | 34 |
| 'static' modifier out of order with the JLS suggestions. | 34 |
| Missing a Javadoc comment. | 35 |
| 'static' modifier out of order with the JLS suggestions. | 35 |
| Line is longer than 80 characters (found 98). | 37 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 37 |
| Missing a Javadoc comment. | 37 |
| Parameter mapping should be final. | 37 |
| Parameter form should be final. | 37 |
| Parameter request should be final. | 37 |
| Parameter response should be final. | 38 |
| Line is longer than 80 characters (found 85). | 39 |
| Line is longer than 80 characters (found 98). | 44 |
| Line is longer than 80 characters (found 85). | 45 |
| Line is longer than 80 characters (found 86). | 47 |
| Line is longer than 80 characters (found 81). | 48 |
| Line is longer than 80 characters (found 109). | 51 |
| Line is longer than 80 characters (found 84). | 71 |
| Line is longer than 80 characters (found 123). | 73 |
| Line is longer than 80 characters (found 117). | 83 |
| Line is longer than 80 characters (found 121). | 85 |
| Line has trailing spaces. | 89 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 98). | 18 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 18 |
| Missing a Javadoc comment. | 18 |
| Parameter mapping should be final. | 18 |
| Parameter form should be final. | 18 |
| Parameter request should be final. | 18 |
| Parameter response should be final. | 19 |
| Line is longer than 80 characters (found 85). | 20 |
| Line is longer than 80 characters (found 107). | 21 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 98). | 18 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 18 |
| Missing a Javadoc comment. | 18 |
| Parameter mapping should be final. | 18 |
| Parameter form should be final. | 18 |
| Parameter request should be final. | 18 |
| Parameter response should be final. | 19 |
| Line is longer than 80 characters (found 85). | 20 |
| Line is longer than 80 characters (found 116). | 21 |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| Missing a Javadoc comment. | 33 |
| 'static' modifier out of order with the JLS suggestions. | 33 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 35 |
| Missing a Javadoc comment. | 35 |
| Parameter mapping should be final. | 35 |
| Parameter form should be final. | 36 |
| Parameter request should be final. | 37 |
| Parameter response should be final. | 38 |
| Line is longer than 80 characters (found 87). | 41 |
| Line is longer than 80 characters (found 82). | 50 |
| Line is longer than 80 characters (found 127). | 54 |
| Line is longer than 80 characters (found 90). | 59 |
| Line is longer than 80 characters (found 92). | 61 |
| Line is longer than 80 characters (found 95). | 66 |
| Line is longer than 80 characters (found 82). | 77 |
| Line is longer than 80 characters (found 112). | 78 |
| '{' is not preceded with whitespace. | 81 |
| Line is longer than 80 characters (found 108). | 101 |
| Parameter ec should be final. | 101 |
| Parameter con should be final. | 101 |
| Expected @throws tag for 'EcException'. | 101 |
| Expected @throws tag for 'SQLException'. | 101 |
| Line is longer than 80 characters (found 81). | 102 |
| Line is longer than 80 characters (found 111). | 113 |
| Parameter ec should be final. | 113 |
| Parameter con should be final. | 113 |
| Expected @throws tag for 'EcException'. | 113 |
| Expected @throws tag for 'SQLException'. | 113 |
| Line is longer than 80 characters (found 97). | 114 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 36 |
| Line contains a tab character. | 37 |
| Missing a Javadoc comment. | 38 |
| 'static' modifier out of order with the JLS suggestions. | 38 |
| Missing a Javadoc comment. | 39 |
| 'static' modifier out of order with the JLS suggestions. | 39 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 41 |
| Line is longer than 80 characters (found 98). | 42 |
| Parameter mapping should be final. | 42 |
| Parameter form should be final. | 42 |
| Parameter request should be final. | 42 |
| Parameter response should be final. | 43 |
| 'if' construct must use '{}'s. | 46 |
| '{' is not preceded with whitespace. | 49 |
| '+' is not preceded with whitespace. | 51 |
| '+' is not followed by whitespace. | 51 |
| '+' is not preceded with whitespace. | 51 |
| '+' is not followed by whitespace. | 51 |
| Line is longer than 80 characters (found 87). | 57 |
| Line is longer than 80 characters (found 82). | 58 |
| Line is longer than 80 characters (found 117). | 59 |
| Line is longer than 80 characters (found 82). | 61 |
| Line is longer than 80 characters (found 93). | 64 |
| Line is longer than 80 characters (found 123). | 65 |
| Line is longer than 80 characters (found 85). | 77 |
| Line is longer than 80 characters (found 96). | 78 |
| Line is longer than 80 characters (found 122). | 79 |
| Line is longer than 80 characters (found 104). | 83 |
| '{' is not preceded with whitespace. | 96 |
| Line is longer than 80 characters (found 130). | 100 |
| Line is longer than 80 characters (found 99). | 109 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 33 |
| Line contains a tab character. | 34 |
| Missing a Javadoc comment. | 35 |
| 'static' modifier out of order with the JLS suggestions. | 35 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 37 |
| Line is longer than 80 characters (found 98). | 38 |
| Parameter mapping should be final. | 38 |
| Parameter form should be final. | 38 |
| Parameter request should be final. | 38 |
| Parameter response should be final. | 39 |
| 'if' construct must use '{}'s. | 42 |
| Line has trailing spaces. | 53 |
| Line is longer than 80 characters (found 82). | 54 |
| Line is longer than 80 characters (found 117). | 55 |
| Line is longer than 80 characters (found 82). | 56 |
| '{' is not preceded with whitespace. | 63 |
| Line is longer than 80 characters (found 118). | 65 |
| Line is longer than 80 characters (found 109). | 66 |
| Line is longer than 80 characters (found 87). | 67 |
| Line has trailing spaces. | 75 |
| '{' is not preceded with whitespace. | 77 |
| Line is longer than 80 characters (found 130). | 81 |
| Line is longer than 80 characters (found 99). | 91 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 21 |
| Line has trailing spaces. | 23 |
| Line contains a tab character. | 23 |
| Missing a Javadoc comment. | 24 |
| Name 'LOGGER' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 24 |
| Line has trailing spaces. | 26 |
| Line is longer than 80 characters (found 81). | 27 |
| Line contains a tab character. | 27 |
| Missing a Javadoc comment. | 27 |
| Line has trailing spaces. | 28 |
| Line contains a tab character. | 28 |
| Line contains a tab character. | 29 |
| Line contains a tab character. | 30 |
| Line contains a tab character. | 31 |
| Expected an @return tag. | 32 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 32 |
| Parameter mapping should be final. | 33 |
| Expected @param tag for 'mapping'. | 33 |
| Parameter form should be final. | 33 |
| Expected @param tag for 'form'. | 33 |
| Parameter req should be final. | 34 |
| Expected @param tag for 'req'. | 34 |
| Parameter res should be final. | 34 |
| Expected @param tag for 'res'. | 34 |
| Expected @throws tag for 'Exception'. | 34 |
| Line has trailing spaces. | 42 |
| '{' is not preceded with whitespace. | 48 |
| Line is longer than 80 characters (found 82). | 55 |
| Line has trailing spaces. | 61 |
| '{' is not preceded with whitespace. | 69 |
| Violation | Message | Line |
|---|---|---|
| Using the '.*' form of import should be avoided - org.apache.struts.action.*. | 9 |
| Missing a Javadoc comment. | 32 |
| Line contains a tab character. | 33 |
| Missing a Javadoc comment. | 34 |
| 'static' modifier out of order with the JLS suggestions. | 34 |
| Line is longer than 80 characters (found 98). | 36 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 36 |
| Missing a Javadoc comment. | 36 |
| Parameter mapping should be final. | 36 |
| Parameter form should be final. | 36 |
| Parameter request should be final. | 36 |
| Parameter response should be final. | 37 |
| 'if' construct must use '{}'s. | 40 |
| Line is longer than 80 characters (found 82). | 43 |
| Line is longer than 80 characters (found 82). | 45 |
| Line is longer than 80 characters (found 84). | 47 |
| '{' is not preceded with whitespace. | 53 |
| Line has trailing spaces. | 66 |
| Line contains a tab character. | 66 |
| '{' is not preceded with whitespace. | 67 |
| '{' is not preceded with whitespace. | 69 |
| Line is longer than 80 characters (found 91). | 71 |
| Line contains a tab character. | 74 |
| Line contains a tab character. | 75 |
| Line contains a tab character. | 76 |
| Line contains a tab character. | 77 |
| Line contains a tab character. | 78 |
| Line contains a tab character. | 79 |
| Line contains a tab character. | 80 |
| '1000' is a magic number. | 80 |
| Line contains a tab character. | 81 |
| Line contains a tab character. | 82 |
| '{' is not preceded with whitespace. | 82 |
| Line contains a tab character. | 83 |
| Line contains a tab character. | 84 |
| Line is longer than 80 characters (found 88). | 85 |
| Line contains a tab character. | 85 |
| Line contains a tab character. | 86 |
| Line contains a tab character. | 87 |
| Line contains a tab character. | 88 |
| Line contains a tab character. | 89 |
| Line contains a tab character. | 90 |
| Line contains a tab character. | 91 |
| Line contains a tab character. | 92 |
| '{' is not preceded with whitespace. | 98 |
| Line contains a tab character. | 103 |
| Line is longer than 80 characters (found 94). | 127 |
| Line is longer than 80 characters (found 115). | 130 |
| Parameter ec should be final. | 130 |
| Parameter errors should be final. | 130 |
| Parameter con should be final. | 130 |
| Line is longer than 80 characters (found 91). | 138 |
| Line is longer than 80 characters (found 99). | 143 |
| Line is longer than 80 characters (found 84). | 144 |
| Line is longer than 80 characters (found 98). | 146 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 33 |
| Line contains a tab character. | 34 |
| Missing a Javadoc comment. | 35 |
| 'static' modifier out of order with the JLS suggestions. | 35 |
| Line is longer than 80 characters (found 98). | 37 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 37 |
| Missing a Javadoc comment. | 37 |
| Parameter mapping should be final. | 37 |
| Parameter form should be final. | 37 |
| Parameter request should be final. | 37 |
| Parameter response should be final. | 38 |
| 'if' construct must use '{}'s. | 41 |
| Line is longer than 80 characters (found 82). | 53 |
| Line is longer than 80 characters (found 117). | 54 |
| Line is longer than 80 characters (found 82). | 55 |
| '{' is not preceded with whitespace. | 67 |
| Line is longer than 80 characters (found 112). | 69 |
| Line is longer than 80 characters (found 105). | 70 |
| Line is longer than 80 characters (found 83). | 71 |
| '{' is not preceded with whitespace. | 76 |
| Line is longer than 80 characters (found 130). | 80 |
| Line is longer than 80 characters (found 99). | 90 |
| Violation | Message | Line |
|---|---|---|
| Using the '.*' form of import should be avoided - org.apache.struts.action.*. | 4 |
| Using the '.*' form of import should be avoided - uk.ac.ebi.intenz.webapp.dtos.*. | 6 |
| Unused import - uk.ac.ebi.intenz.webapp.utilities.EntryLockSingleton. | 8 |
| Line has trailing spaces. | 16 |
| Missing a Javadoc comment. | 23 |
| Line contains a tab character. | 24 |
| Missing a Javadoc comment. | 25 |
| 'static' modifier out of order with the JLS suggestions. | 25 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 27 |
| Missing a Javadoc comment. | 27 |
| Parameter mapping should be final. | 27 |
| Parameter form should be final. | 28 |
| Parameter request should be final. | 29 |
| Parameter response should be final. | 30 |
| Line is longer than 80 characters (found 87). | 33 |
| 'if' construct must use '{}'s. | 35 |
| Line is longer than 80 characters (found 120). | 35 |
| 'if' is not followed by whitespace. | 35 |
| Line is longer than 80 characters (found 98). | 39 |
| Line is longer than 80 characters (found 85). | 40 |
| Line is longer than 80 characters (found 86). | 42 |
| Line is longer than 80 characters (found 81). | 43 |
| Line is longer than 80 characters (found 109). | 46 |
| Line is longer than 80 characters (found 93). | 54 |
| Line is longer than 80 characters (found 89). | 56 |
| Line is longer than 80 characters (found 84). | 67 |
| Unused @throws tag for 'NullPointerException'. | 70 |
| Method 'keepToken' is not designed for extension - needs to be abstract, final or empty. | 72 |
| Parameter request should be final. | 72 |
| 'if' construct must use '{}'s. | 73 |
| Line is longer than 80 characters (found 97). | 73 |
| 'if' construct must use '{}'s. | 74 |
| Line is longer than 80 characters (found 144). | 74 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 35 |
| Line contains a tab character. | 36 |
| Missing a Javadoc comment. | 37 |
| 'static' modifier out of order with the JLS suggestions. | 37 |
| Missing a Javadoc comment. | 38 |
| 'static' modifier out of order with the JLS suggestions. | 38 |
| Line is longer than 80 characters (found 98). | 40 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 40 |
| Missing a Javadoc comment. | 40 |
| Parameter mapping should be final. | 40 |
| Parameter form should be final. | 40 |
| Parameter request should be final. | 40 |
| Parameter response should be final. | 41 |
| 'if' construct must use '{}'s. | 44 |
| Line is longer than 80 characters (found 87). | 47 |
| Line is longer than 80 characters (found 82). | 49 |
| Line is longer than 80 characters (found 117). | 50 |
| Line is longer than 80 characters (found 82). | 53 |
| Line is longer than 80 characters (found 123). | 57 |
| Line is longer than 80 characters (found 83). | 69 |
| Line is longer than 80 characters (found 111). | 71 |
| Line is longer than 80 characters (found 118). | 88 |
| '{' is not preceded with whitespace. | 93 |
| Line is longer than 80 characters (found 90). | 102 |
| Parameter oldHistory should be final. | 118 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 29 |
| Line contains a tab character. | 30 |
| Missing a Javadoc comment. | 31 |
| 'static' modifier out of order with the JLS suggestions. | 31 |
| Line is longer than 80 characters (found 98). | 33 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 33 |
| Missing a Javadoc comment. | 33 |
| Parameter mapping should be final. | 33 |
| Parameter form should be final. | 33 |
| Parameter request should be final. | 33 |
| Parameter response should be final. | 34 |
| 'if' construct must use '{}'s. | 37 |
| Line is longer than 80 characters (found 82). | 41 |
| Line is longer than 80 characters (found 117). | 42 |
| Line is longer than 80 characters (found 82). | 43 |
| '{' is not preceded with whitespace. | 54 |
| Line contains a tab character. | 55 |
| Line contains a tab character. | 56 |
| Line is longer than 80 characters (found 83). | 57 |
| Line contains a tab character. | 57 |
| Line is longer than 80 characters (found 84). | 58 |
| Line contains a tab character. | 58 |
| Line contains a tab character. | 59 |
| Line is longer than 80 characters (found 114). | 63 |
| Line is longer than 80 characters (found 111). | 64 |
| Line is longer than 80 characters (found 91). | 79 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 39 |
| Line contains a tab character. | 40 |
| Missing a Javadoc comment. | 41 |
| Line has trailing spaces. | 42 |
| Missing a Javadoc comment. | 43 |
| 'static' modifier out of order with the JLS suggestions. | 43 |
| Missing a Javadoc comment. | 44 |
| 'static' modifier out of order with the JLS suggestions. | 44 |
| Line is longer than 80 characters (found 98). | 46 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 46 |
| Missing a Javadoc comment. | 46 |
| Parameter mapping should be final. | 46 |
| Parameter form should be final. | 46 |
| Parameter request should be final. | 46 |
| Parameter response should be final. | 47 |
| 'if' construct must use '{}'s. | 50 |
| Line is longer than 80 characters (found 94). | 52 |
| Line is longer than 80 characters (found 82). | 58 |
| Line is longer than 80 characters (found 117). | 59 |
| Line is longer than 80 characters (found 82). | 62 |
| Line contains a tab character. | 66 |
| '{' is not preceded with whitespace. | 73 |
| Line is longer than 80 characters (found 82). | 75 |
| Line is longer than 80 characters (found 108). | 82 |
| Line is longer than 80 characters (found 83). | 94 |
| Line is longer than 80 characters (found 99). | 95 |
| Line is longer than 80 characters (found 104). | 96 |
| Line is longer than 80 characters (found 88). | 98 |
| '?' is not preceded with whitespace. | 100 |
| '?' should be on a new line. | 100 |
| Avoid inline conditionals. | 100 |
| Line contains a tab character. | 101 |
| Line is longer than 80 characters (found 81). | 112 |
| Line is longer than 80 characters (found 95). | 113 |
| '{' is not preceded with whitespace. | 116 |
| Line contains a tab character. | 117 |
| Line is longer than 80 characters (found 92). | 118 |
| Line contains a tab character. | 118 |
| Line is longer than 80 characters (found 93). | 119 |
| Line contains a tab character. | 119 |
| Line is longer than 80 characters (found 92). | 120 |
| Line contains a tab character. | 120 |
| Line is longer than 80 characters (found 89). | 122 |
| Line is longer than 80 characters (found 89). | 123 |
| Line has trailing spaces. | 128 |
| '{' is not preceded with whitespace. | 130 |
| Line contains a tab character. | 131 |
| Line is longer than 80 characters (found 105). | 135 |
| Line is longer than 80 characters (found 102). | 161 |
| Line is longer than 80 characters (found 115). | 164 |
| Parameter ec should be final. | 164 |
| Parameter errors should be final. | 164 |
| Parameter con should be final. | 164 |
| Line is longer than 80 characters (found 102). | 172 |
| Line is longer than 80 characters (found 99). | 177 |
| Line is longer than 80 characters (found 84). | 178 |
| Line is longer than 80 characters (found 109). | 180 |
| Line is longer than 80 characters (found 86). | 184 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 113). | 34 |
| Line is longer than 80 characters (found 115). | 35 |
| Line is longer than 80 characters (found 83). | 36 |
| Missing a Javadoc comment. | 42 |
| Line contains a tab character. | 43 |
| Missing a Javadoc comment. | 44 |
| Line is longer than 80 characters (found 98). | 46 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 46 |
| Missing a Javadoc comment. | 46 |
| Parameter mapping should be final. | 46 |
| Parameter form should be final. | 46 |
| Parameter request should be final. | 46 |
| Parameter response should be final. | 47 |
| 'if' construct must use '{}'s. | 50 |
| Line has trailing spaces. | 61 |
| Line is longer than 80 characters (found 82). | 62 |
| Line is longer than 80 characters (found 117). | 63 |
| Line is longer than 80 characters (found 82). | 64 |
| Line contains a tab character. | 66 |
| Line contains a tab character. | 68 |
| Line contains a tab character. | 69 |
| Line contains a tab character. | 70 |
| Line contains a tab character. | 71 |
| Line contains a tab character. | 72 |
| Line contains a tab character. | 73 |
| Line contains a tab character. | 74 |
| Line contains a tab character. | 75 |
| Line is longer than 80 characters (found 82). | 76 |
| Line contains a tab character. | 76 |
| Line contains a tab character. | 77 |
| Line contains a tab character. | 78 |
| Line contains a tab character. | 79 |
| Line contains a tab character. | 80 |
| Line is longer than 80 characters (found 82). | 81 |
| Line contains a tab character. | 81 |
| Line contains a tab character. | 82 |
| Line contains a tab character. | 83 |
| Line contains a tab character. | 84 |
| Line contains a tab character. | 85 |
| Line contains a tab character. | 86 |
| Line contains a tab character. | 88 |
| '{' is not preceded with whitespace. | 97 |
| Line contains a tab character. | 101 |
| Line is longer than 80 characters (found 85). | 104 |
| Line contains a tab character. | 104 |
| Line contains a tab character. | 105 |
| Line is longer than 80 characters (found 91). | 106 |
| Line contains a tab character. | 106 |
| Line contains a tab character. | 107 |
| Line contains a tab character. | 109 |
| Line contains a tab character. | 110 |
| Line contains a tab character. | 111 |
| '{' is not preceded with whitespace. | 111 |
| Line contains a tab character. | 112 |
| Line is longer than 80 characters (found 88). | 113 |
| Line contains a tab character. | 113 |
| Line contains a tab character. | 114 |
| Line contains a tab character. | 115 |
| Line contains a tab character. | 116 |
| Line is longer than 80 characters (found 83). | 117 |
| Line contains a tab character. | 117 |
| Line is longer than 80 characters (found 84). | 118 |
| Line contains a tab character. | 118 |
| Line contains a tab character. | 119 |
| Line contains a tab character. | 120 |
| Line is longer than 80 characters (found 84). | 121 |
| Line contains a tab character. | 121 |
| Line contains a tab character. | 122 |
| Line is longer than 80 characters (found 84). | 123 |
| Line contains a tab character. | 123 |
| Line is longer than 80 characters (found 130). | 129 |
| '{' is not preceded with whitespace. | 133 |
| Line is longer than 80 characters (found 99). | 138 |
| Line is longer than 80 characters (found 111). | 150 |
| Line is longer than 80 characters (found 83). | 154 |
| Parameter beforeId should be final. | 160 |
| Parameter con should be final. | 160 |
| Expected @throws tag for 'MapperException'. | 161 |
| Line is longer than 80 characters (found 86). | 166 |
| Parameter oldHistory should be final. | 175 |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| Missing a Javadoc comment. | 21 |
| Missing a Javadoc comment. | 23 |
| Name 'LOGGER' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 23 |
| Line has trailing spaces. | 24 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 25 |
| Parameter mapping should be final. | 26 |
| Parameter form should be final. | 26 |
| Parameter request should be final. | 27 |
| Parameter response should be final. | 27 |
| '{' is not preceded with whitespace. | 34 |
| '{' is not preceded with whitespace. | 39 |
| '{' is not preceded with whitespace. | 50 |
| '{' is not preceded with whitespace. | 53 |
| Violation | Message | Line |
|---|---|---|
| Line contains a tab character. | 27 |
| Missing a Javadoc comment. | 27 |
| Line has trailing spaces. | 28 |
| Line contains a tab character. | 28 |
| Line is longer than 80 characters (found 83). | 29 |
| Line contains a tab character. | 29 |
| Missing a Javadoc comment. | 29 |
| Variable 'cofactorMapper' must be private and have accessor methods. | 29 |
| Line has trailing spaces. | 30 |
| Line contains a tab character. | 30 |
| Line contains a tab character. | 31 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 31 |
| Line contains a tab character. | 32 |
| Parameter mapping should be final. | 32 |
| Parameter form should be final. | 32 |
| Line is longer than 80 characters (found 81). | 33 |
| Line contains a tab character. | 33 |
| Parameter request should be final. | 33 |
| Parameter response should be final. | 33 |
| Line contains a tab character. | 34 |
| Line contains a tab character. | 35 |
| Line contains a tab character. | 36 |
| Line is longer than 80 characters (found 83). | 37 |
| Line contains a tab character. | 37 |
| Line contains a tab character. | 38 |
| Line contains a tab character. | 39 |
| Line contains a tab character. | 40 |
| Line contains a tab character. | 41 |
| '{' is not preceded with whitespace. | 41 |
| Line contains a tab character. | 42 |
| Line contains a tab character. | 43 |
| Line contains a tab character. | 44 |
| Line contains a tab character. | 45 |
| Line contains a tab character. | 47 |
| Line contains a tab character. | 48 |
| Violation | Message | Line |
|---|---|---|
| Using the '.*' form of import should be avoided - org.apache.struts.action.*. | 3 |
| Using the '.*' form of import should be avoided - java.util.*. | 15 |
| Line is longer than 80 characters (found 120). | 27 |
| Missing a Javadoc comment. | 27 |
| Missing a Javadoc comment. | 29 |
| Line is longer than 80 characters (found 105). | 30 |
| '+' should be on a new line. | 30 |
| Missing a Javadoc comment. | 33 |
| Line contains a tab character. | 34 |
| Line is longer than 80 characters (found 99). | 37 |
| '+' should be on a new line. | 42 |
| '+' should be on a new line. | 43 |
| '+' should be on a new line. | 44 |
| Missing a Javadoc comment. | 48 |
| 'static' modifier out of order with the JLS suggestions. | 48 |
| Missing a Javadoc comment. | 49 |
| 'static' modifier out of order with the JLS suggestions. | 49 |
| Missing a Javadoc comment. | 50 |
| 'static' modifier out of order with the JLS suggestions. | 50 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 52 |
| Missing a Javadoc comment. | 52 |
| Parameter mapping should be final. | 52 |
| Parameter form should be final. | 53 |
| Parameter request should be final. | 54 |
| Line is longer than 80 characters (found 81). | 55 |
| Parameter response should be final. | 55 |
| Line is longer than 80 characters (found 92). | 59 |
| '{' is not preceded with whitespace. | 67 |
| '{' is not preceded with whitespace. | 76 |
| Line is longer than 80 characters (found 90). | 90 |
| Line contains a tab character. | 90 |
| '-' is not preceded with whitespace. | 90 |
| '-' is not followed by whitespace. | 90 |
| Line is longer than 80 characters (found 87). | 91 |
| Line contains a tab character. | 91 |
| '?' is not preceded with whitespace. | 91 |
| '?' should be on a new line. | 91 |
| Avoid inline conditionals. | 91 |
| Line contains a tab character. | 92 |
| '{' is not preceded with whitespace. | 100 |
| Line is longer than 80 characters (found 82). | 110 |
| '?' is not preceded with whitespace. | 117 |
| Avoid inline conditionals. | 117 |
| '3' is a magic number. | 123 |
| '3' is a magic number. | 125 |
| '4' is a magic number. | 127 |
| '4' is a magic number. | 129 |
| Line is longer than 80 characters (found 112). | 134 |
| Line is longer than 80 characters (found 123). | 135 |
| 'if' construct must use '{}'s. | 141 |
| Line is longer than 80 characters (found 116). | 144 |
| Line is longer than 80 characters (found 127). | 145 |
| '?' is not preceded with whitespace. | 154 |
| '?' should be on a new line. | 154 |
| Avoid inline conditionals. | 154 |
| Line is longer than 80 characters (found 102). | 155 |
| ':' should be on a new line. | 155 |
| '+' is not preceded with whitespace. | 163 |
| '+' is not followed by whitespace. | 163 |
| '{' is not preceded with whitespace. | 164 |
| '{' is not preceded with whitespace. | 177 |
| '-' is not preceded with whitespace. | 178 |
| '-' is not followed by whitespace. | 178 |
| Parameter ec should be final. | 197 |
| '{' is not preceded with whitespace. | 197 |
| Missing a Javadoc comment. | 202 |
| Parameter query should be final. | 202 |
| Line is longer than 80 characters (found 86). | 205 |
| Line is longer than 80 characters (found 93). | 207 |
| Line is longer than 80 characters (found 113). | 217 |
| Line is longer than 80 characters (found 111). | 218 |
| Parameter text should be final. | 224 |
| Line is longer than 80 characters (found 107). | 240 |
| Parameter text should be final. | 247 |
| Parameter escapeCharacters should be final. | 247 |
| 'if' construct must use '{}'s. | 252 |
| 'else' construct must use '{}'s. | 254 |
| 'if' construct must use '{}'s. | 259 |
| 'else' construct must use '{}'s. | 261 |
| Missing a Javadoc comment. | 267 |
| Parameter result should be final. | 267 |
| Parameter start should be final. | 267 |
| Parameter end should be final. | 267 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 23 |
| Missing a Javadoc comment. | 25 |
| Name 'LOGGER' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 25 |
| Line has trailing spaces. | 26 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 27 |
| Parameter mapping should be final. | 28 |
| Parameter form should be final. | 28 |
| Parameter request should be final. | 29 |
| Parameter response should be final. | 29 |
| '{' is not preceded with whitespace. | 34 |
| '{' is not preceded with whitespace. | 43 |
| '{' is not preceded with whitespace. | 45 |
| '{' is not preceded with whitespace. | 52 |
| '{' is not preceded with whitespace. | 58 |
| '{' is not preceded with whitespace. | 67 |
| Violation | Message | Line |
|---|---|---|
| Using the '.*' form of import should be avoided - org.apache.struts.action.*. | 4 |
| Using the '.*' form of import should be avoided - uk.ac.ebi.intenz.domain.enzyme.*. | 6 |
| Missing a Javadoc comment. | 31 |
| 'static' modifier out of order with the JLS suggestions. | 31 |
| Missing a Javadoc comment. | 32 |
| 'static' modifier out of order with the JLS suggestions. | 32 |
| Missing a Javadoc comment. | 33 |
| Line is longer than 80 characters (found 92). | 35 |
| Missing a Javadoc comment. | 35 |
| 'static' modifier out of order with the JLS suggestions. | 35 |
| Line is longer than 80 characters (found 88). | 36 |
| Missing a Javadoc comment. | 36 |
| 'static' modifier out of order with the JLS suggestions. | 36 |
| Line is longer than 80 characters (found 83). | 37 |
| Missing a Javadoc comment. | 37 |
| 'static' modifier out of order with the JLS suggestions. | 37 |
| Line is longer than 80 characters (found 90). | 38 |
| Missing a Javadoc comment. | 38 |
| 'static' modifier out of order with the JLS suggestions. | 38 |
| Line is longer than 80 characters (found 83). | 39 |
| Missing a Javadoc comment. | 39 |
| 'static' modifier out of order with the JLS suggestions. | 39 |
| Missing a Javadoc comment. | 41 |
| Line contains a tab character. | 42 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 44 |
| Missing a Javadoc comment. | 44 |
| Parameter mapping should be final. | 44 |
| Parameter form should be final. | 45 |
| Parameter request should be final. | 46 |
| Parameter response should be final. | 47 |
| Line is longer than 80 characters (found 92). | 49 |
| Line is longer than 80 characters (found 116). | 51 |
| Comment matches to-do format 'TODO:'. | 65 |
| Line is longer than 80 characters (found 87). | 69 |
| Line is longer than 80 characters (found 82). | 73 |
| Parameter ec should be final. | 75 |
| Parameter errors should be final. | 75 |
| Parameter request should be final. | 76 |
| Parameter con should be final. | 76 |
| Expected @param tag for 'con'. | 76 |
| switch without "default" clause. | 83 |
| Line is longer than 80 characters (found 114). | 88 |
| '+' should be on a new line. | 88 |
| Line is longer than 80 characters (found 97). | 91 |
| Line is longer than 80 characters (found 96). | 100 |
| '+' should be on a new line. | 100 |
| '+' should be on a new line. | 101 |
| Line is longer than 80 characters (found 97). | 104 |
| Line is longer than 80 characters (found 103). | 113 |
| '+' should be on a new line. | 113 |
| '+' should be on a new line. | 114 |
| 'if' construct must use '{}'s. | 117 |
| Line is longer than 80 characters (found 129). | 117 |
| Line is longer than 80 characters (found 97). | 120 |
| Line is longer than 80 characters (found 87). | 128 |
| Line is longer than 80 characters (found 110). | 133 |
| Line is longer than 80 characters (found 104). | 138 |
| Line is longer than 80 characters (found 87). | 141 |
| Line is longer than 80 characters (found 84). | 143 |
| Line is longer than 80 characters (found 101). | 145 |
| Line is longer than 80 characters (found 102). | 148 |
| Line is longer than 80 characters (found 92). | 156 |
| Line is longer than 80 characters (found 119). | 168 |
| Parameter ec should be final. | 168 |
| Parameter con should be final. | 168 |
| Expected @param tag for 'con'. | 168 |
| Line is longer than 80 characters (found 107). | 181 |
| Parameter ec should be final. | 181 |
| Parameter con should be final. | 181 |
| Expected @param tag for 'con'. | 181 |
| Line is longer than 80 characters (found 98). | 184 |
| Line is longer than 80 characters (found 113). | 195 |
| Parameter ec should be final. | 195 |
| Parameter con should be final. | 195 |
| Expected @param tag for 'con'. | 195 |
| Line is longer than 80 characters (found 82). | 208 |
| Parameter id should be final. | 210 |
| Parameter con should be final. | 210 |
| Expected @param tag for 'con'. | 210 |
| Line is longer than 80 characters (found 120). | 220 |
| Parameter ec should be final. | 227 |
| Parameter con should be final. | 227 |
| Expected @param tag for 'con'. | 227 |
| Line contains a tab character. | 231 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 35 |
| 'static' modifier out of order with the JLS suggestions. | 35 |
| Line is longer than 80 characters (found 92). | 37 |
| Missing a Javadoc comment. | 37 |
| 'static' modifier out of order with the JLS suggestions. | 37 |
| Line is longer than 80 characters (found 90). | 38 |
| Missing a Javadoc comment. | 38 |
| 'static' modifier out of order with the JLS suggestions. | 38 |
| Line is longer than 80 characters (found 86). | 39 |
| Missing a Javadoc comment. | 39 |
| 'static' modifier out of order with the JLS suggestions. | 39 |
| Missing a Javadoc comment. | 41 |
| Line contains a tab character. | 42 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 44 |
| Missing a Javadoc comment. | 44 |
| Parameter mapping should be final. | 44 |
| Parameter form should be final. | 45 |
| Parameter request should be final. | 46 |
| Parameter response should be final. | 47 |
| Line is longer than 80 characters (found 107). | 52 |
| 'if' construct must use '{}'s. | 54 |
| Line is longer than 80 characters (found 114). | 54 |
| Avoid inline conditionals. | 54 |
| Line is longer than 80 characters (found 109). | 58 |
| Line is longer than 80 characters (found 85). | 59 |
| Line is longer than 80 characters (found 86). | 61 |
| Line is longer than 80 characters (found 81). | 62 |
| Line is longer than 80 characters (found 82). | 70 |
| '+' should be on a new line. | 75 |
| Line is longer than 80 characters (found 89). | 76 |
| Line is longer than 80 characters (found 120). | 84 |
| '+' should be on a new line. | 88 |
| Line is longer than 80 characters (found 82). | 89 |
| Line is longer than 80 characters (found 112). | 93 |
| Line is longer than 80 characters (found 111). | 96 |
| Line is longer than 80 characters (found 116). | 104 |
| Line is longer than 80 characters (found 112). | 110 |
| Line is longer than 80 characters (found 112). | 117 |
| Line is longer than 80 characters (found 85). | 132 |
| Parameter id should be final. | 135 |
| Parameter con should be final. | 135 |
| Expected @param tag for 'con'. | 135 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 24 |
| Line contains a tab character. | 26 |
| Missing a Javadoc comment. | 26 |
| Line contains a tab character. | 28 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 28 |
| Line contains a tab character. | 29 |
| Parameter mapping should be final. | 29 |
| Parameter form should be final. | 29 |
| Line is longer than 80 characters (found 81). | 30 |
| Line contains a tab character. | 30 |
| Parameter request should be final. | 30 |
| Parameter response should be final. | 30 |
| Line contains a tab character. | 31 |
| Line is longer than 80 characters (found 90). | 32 |
| Line contains a tab character. | 32 |
| Line contains a tab character. | 33 |
| Line is longer than 80 characters (found 82). | 34 |
| Line contains a tab character. | 34 |
| Line is longer than 80 characters (found 95). | 35 |
| Line contains a tab character. | 35 |
| '{' is not preceded with whitespace. | 35 |
| Line contains a tab character. | 36 |
| Line contains a tab character. | 37 |
| Line contains a tab character. | 38 |
| Line contains a tab character. | 39 |
| Line contains a tab character. | 40 |
| Line contains a tab character. | 41 |
| Line contains a tab character. | 42 |
| Line contains a tab character. | 43 |
| Line contains a tab character. | 44 |
| Line contains a tab character. | 45 |
| Line is longer than 80 characters (found 89). | 46 |
| Line contains a tab character. | 46 |
| Line is longer than 80 characters (found 89). | 47 |
| Line contains a tab character. | 47 |
| '&&' should be on a new line. | 47 |
| Line contains a tab character. | 48 |
| '{' is not preceded with whitespace. | 48 |
| Line contains a tab character. | 49 |
| Line contains a tab character. | 50 |
| Line contains a tab character. | 51 |
| Line is longer than 80 characters (found 100). | 52 |
| Line contains a tab character. | 52 |
| Line contains a tab character. | 53 |
| Line contains a tab character. | 54 |
| Line contains a tab character. | 55 |
| Line is longer than 80 characters (found 97). | 56 |
| Line contains a tab character. | 56 |
| Line contains a tab character. | 57 |
| Line contains a tab character. | 58 |
| Violation | Message | Line |
|---|---|---|
| Using the '.*' form of import should be avoided - org.apache.struts.action.*. | 4 |
| Unused import - org.apache.struts.Globals. | 5 |
| Unused import - org.apache.struts.taglib.html.Constants. | 6 |
| Unused import - uk.ac.ebi.intenz.domain.constants.EnzymeViewConstant. | 8 |
| Unused import - uk.ac.ebi.intenz.domain.exceptions.DomainException. | 12 |
| Unused import - uk.ac.ebi.intenz.webapp.utilities.ControlFlowToken. | 15 |
| Unused import - java.sql.SQLException. | 25 |
| Unused import - java.util.Map. | 26 |
| Line is longer than 80 characters (found 85). | 31 |
| Missing a Javadoc comment. | 38 |
| 'static' modifier out of order with the JLS suggestions. | 38 |
| Missing a Javadoc comment. | 40 |
| Line contains a tab character. | 41 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 43 |
| Missing a Javadoc comment. | 43 |
| Parameter mapping should be final. | 43 |
| Parameter form should be final. | 44 |
| Parameter request should be final. | 45 |
| Parameter response should be final. | 46 |
| Line is longer than 80 characters (found 82). | 47 |
| Line is longer than 80 characters (found 85). | 51 |
| Line is longer than 80 characters (found 101). | 52 |
| Line is longer than 80 characters (found 122). | 55 |
| Line is longer than 80 characters (found 83). | 57 |
| Line is longer than 80 characters (found 95). | 62 |
| Line is longer than 80 characters (found 94). | 65 |
| Line is longer than 80 characters (found 114). | 67 |
| Line has trailing spaces. | 68 |
| Line is longer than 80 characters (found 111). | 68 |
| Line is longer than 80 characters (found 112). | 70 |
| Parameter proposedList should be final. | 70 |
| Parameter encoding should be final. | 70 |
| Parameter encodingType should be final. | 70 |
| Line is longer than 80 characters (found 91). | 84 |
| Line is longer than 80 characters (found 107). | 90 |
| Line is longer than 80 characters (found 88). | 91 |
| Line is longer than 80 characters (found 83). | 92 |
| Line is longer than 80 characters (found 96). | 93 |
| 'if' construct must use '{}'s. | 94 |
| '&&' should be on a new line. | 94 |
| Line is longer than 80 characters (found 136). | 97 |
| Violation | Message | Line |
|---|---|---|
| Using the '.*' form of import should be avoided - org.apache.struts.action.*. | 4 |
| Unused import - org.apache.struts.Globals. | 5 |
| Unused import - org.apache.struts.taglib.html.Constants. | 6 |
| Unused import - uk.ac.ebi.intenz.domain.constants.EnzymeViewConstant. | 8 |
| Unused import - uk.ac.ebi.intenz.domain.exceptions.DomainException. | 12 |
| Unused import - uk.ac.ebi.intenz.webapp.utilities.ControlFlowToken. | 15 |
| Unused import - java.sql.SQLException. | 25 |
| Unused import - java.util.Map. | 26 |
| Line is longer than 80 characters (found 85). | 31 |
| Missing a Javadoc comment. | 38 |
| 'static' modifier out of order with the JLS suggestions. | 38 |
| Missing a Javadoc comment. | 40 |
| Line contains a tab character. | 41 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 43 |
| Missing a Javadoc comment. | 43 |
| Parameter mapping should be final. | 43 |
| Parameter form should be final. | 44 |
| Parameter request should be final. | 45 |
| Parameter response should be final. | 46 |
| Line is longer than 80 characters (found 82). | 47 |
| Line is longer than 80 characters (found 85). | 51 |
| Line is longer than 80 characters (found 101). | 52 |
| Line is longer than 80 characters (found 123). | 55 |
| Line is longer than 80 characters (found 84). | 57 |
| Line is longer than 80 characters (found 95). | 62 |
| Line is longer than 80 characters (found 95). | 65 |
| Line is longer than 80 characters (found 114). | 67 |
| Line has trailing spaces. | 68 |
| Line is longer than 80 characters (found 111). | 68 |
| Line is longer than 80 characters (found 113). | 70 |
| Parameter suggestedList should be final. | 70 |
| Parameter encoding should be final. | 70 |
| Parameter encodingType should be final. | 70 |
| Line is longer than 80 characters (found 81). | 71 |
| Line is longer than 80 characters (found 91). | 84 |
| Line is longer than 80 characters (found 107). | 90 |
| Line is longer than 80 characters (found 88). | 91 |
| Line is longer than 80 characters (found 83). | 92 |
| Line is longer than 80 characters (found 96). | 93 |
| 'if' construct must use '{}'s. | 94 |
| '&&' should be on a new line. | 94 |
| Line is longer than 80 characters (found 136). | 97 |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| '{' is not preceded with whitespace. | 15 |
| Missing a Javadoc comment. | 17 |
| Missing a Javadoc comment. | 18 |
| Missing a Javadoc comment. | 19 |
| Missing a Javadoc comment. | 20 |
| Missing a Javadoc comment. | 21 |
| Missing a Javadoc comment. | 22 |
| Missing a Javadoc comment. | 23 |
| Missing a Javadoc comment. | 24 |
| Missing a Javadoc comment. | 25 |
| Missing a Javadoc comment. | 26 |
| Missing a Javadoc comment. | 28 |
| Line is longer than 80 characters (found 137). | 36 |
| Missing a Javadoc comment. | 39 |
| Parameter cofactorDTO should be final. | 39 |
| Line is longer than 80 characters (found 83). | 48 |
| Method 'validate' is not designed for extension - needs to be abstract, final or empty. | 48 |
| Missing a Javadoc comment. | 48 |
| Parameter mapping should be final. | 48 |
| Parameter request should be final. | 48 |
| Line is longer than 80 characters (found 103). | 53 |
| Avoid inline conditionals. | 56 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 59 |
| Missing a Javadoc comment. | 59 |
| Parameter o should be final. | 59 |
| 'if' construct must use '{}'s. | 60 |
| 'if' construct must use '{}'s. | 61 |
| 'if' construct must use '{}'s. | 65 |
| Line is longer than 80 characters (found 103). | 65 |
| Avoid inline conditionals. | 65 |
| 'if' construct must use '{}'s. | 66 |
| Line is longer than 80 characters (found 129). | 66 |
| Avoid inline conditionals. | 66 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 72 |
| Missing a Javadoc comment. | 72 |
| Avoid inline conditionals. | 74 |
| '29' is a magic number. | 75 |
| Avoid inline conditionals. | 75 |
| '29' is a magic number. | 76 |
| '?' is not preceded with whitespace. | 76 |
| Avoid inline conditionals. | 76 |
| Line is longer than 80 characters (found 118). | 81 |
| Line is longer than 80 characters (found 85). | 90 |
| Method 'getCofactorValue' is not designed for extension - needs to be abstract, final or empty. | 92 |
| Missing a Javadoc comment. | 92 |
| Method 'setCofactorValue' is not designed for extension - needs to be abstract, final or empty. | 96 |
| Missing a Javadoc comment. | 96 |
| Parameter cofactorValue should be final. | 96 |
| 'cofactorValue' hides a field. | 96 |
| Method 'getXmlCofactorValue' is not designed for extension - needs to be abstract, final or empty. | 100 |
| Missing a Javadoc comment. | 100 |
| Method 'setXmlCofactorValue' is not designed for extension - needs to be abstract, final or empty. | 104 |
| Missing a Javadoc comment. | 104 |
| Parameter xmlCofactorValue should be final. | 104 |
| 'xmlCofactorValue' hides a field. | 104 |
| Method 'getOrderIn' is not designed for extension - needs to be abstract, final or empty. | 110 |
| Missing a Javadoc comment. | 110 |
| Method 'setOrderIn' is not designed for extension - needs to be abstract, final or empty. | 114 |
| Missing a Javadoc comment. | 114 |
| Parameter orderIn should be final. | 114 |
| 'orderIn' hides a field. | 114 |
| Method 'getSource' is not designed for extension - needs to be abstract, final or empty. | 118 |
| Missing a Javadoc comment. | 118 |
| Method 'setSource' is not designed for extension - needs to be abstract, final or empty. | 122 |
| Missing a Javadoc comment. | 122 |
| Parameter source should be final. | 122 |
| 'source' hides a field. | 122 |
| Method 'getView' is not designed for extension - needs to be abstract, final or empty. | 126 |
| Missing a Javadoc comment. | 126 |
| Method 'setView' is not designed for extension - needs to be abstract, final or empty. | 130 |
| Missing a Javadoc comment. | 130 |
| Parameter view should be final. | 130 |
| 'view' hides a field. | 130 |
| Method 'getSourceDisplay' is not designed for extension - needs to be abstract, final or empty. | 135 |
| Missing a Javadoc comment. | 135 |
| Method 'setSourceDisplay' is not designed for extension - needs to be abstract, final or empty. | 139 |
| Missing a Javadoc comment. | 139 |
| Parameter sourceDisplay should be final. | 139 |
| 'sourceDisplay' hides a field. | 139 |
| Method 'getViewDisplayString' is not designed for extension - needs to be abstract, final or empty. | 143 |
| Missing a Javadoc comment. | 143 |
| Method 'setViewDisplayString' is not designed for extension - needs to be abstract, final or empty. | 147 |
| Missing a Javadoc comment. | 147 |
| Parameter viewDisplayString should be final. | 147 |
| 'viewDisplayString' hides a field. | 147 |
| Method 'getViewDisplayImage' is not designed for extension - needs to be abstract, final or empty. | 151 |
| Missing a Javadoc comment. | 151 |
| Method 'setViewDisplayImage' is not designed for extension - needs to be abstract, final or empty. | 155 |
| Missing a Javadoc comment. | 155 |
| Parameter viewDisplayImage should be final. | 155 |
| 'viewDisplayImage' hides a field. | 155 |
| Method 'getAccession' is not designed for extension - needs to be abstract, final or empty. | 159 |
| Missing a Javadoc comment. | 159 |
| Line contains a tab character. | 160 |
| Method 'setAccession' is not designed for extension - needs to be abstract, final or empty. | 163 |
| Missing a Javadoc comment. | 163 |
| Parameter accession should be final. | 163 |
| 'accession' hides a field. | 163 |
| Line contains a tab character. | 164 |
| Method 'getCompoundId' is not designed for extension - needs to be abstract, final or empty. | 167 |
| Missing a Javadoc comment. | 167 |
| Line contains a tab character. | 168 |
| Method 'setCompoundId' is not designed for extension - needs to be abstract, final or empty. | 171 |
| Missing a Javadoc comment. | 171 |
| Parameter compoundId should be final. | 171 |
| 'compoundId' hides a field. | 171 |
| Line contains a tab character. | 172 |
| Method 'compareTo' is not designed for extension - needs to be abstract, final or empty. | 176 |
| Missing a Javadoc comment. | 176 |
| Parameter other should be final. | 176 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 25 |
| Missing a Javadoc comment. | 26 |
| Missing a Javadoc comment. | 27 |
| Missing a Javadoc comment. | 28 |
| Missing a Javadoc comment. | 29 |
| Missing a Javadoc comment. | 30 |
| Missing a Javadoc comment. | 31 |
| Missing a Javadoc comment. | 32 |
| Missing a Javadoc comment. | 36 |
| Line is longer than 80 characters (found 153). | 44 |
| Missing a Javadoc comment. | 47 |
| Parameter commentDTO should be final. | 47 |
| Method 'getComment' is not designed for extension - needs to be abstract, final or empty. | 60 |
| Missing a Javadoc comment. | 60 |
| Method 'setComment' is not designed for extension - needs to be abstract, final or empty. | 64 |
| Missing a Javadoc comment. | 64 |
| Parameter comment should be final. | 64 |
| 'comment' hides a field. | 64 |
| Method 'getOrderIn' is not designed for extension - needs to be abstract, final or empty. | 68 |
| Missing a Javadoc comment. | 68 |
| Method 'setOrderIn' is not designed for extension - needs to be abstract, final or empty. | 72 |
| Missing a Javadoc comment. | 72 |
| Parameter orderIn should be final. | 72 |
| 'orderIn' hides a field. | 72 |
| Method 'getSource' is not designed for extension - needs to be abstract, final or empty. | 76 |
| Missing a Javadoc comment. | 76 |
| Method 'setSource' is not designed for extension - needs to be abstract, final or empty. | 80 |
| Missing a Javadoc comment. | 80 |
| Parameter source should be final. | 80 |
| 'source' hides a field. | 80 |
| Method 'getSourceDisplay' is not designed for extension - needs to be abstract, final or empty. | 84 |
| Missing a Javadoc comment. | 84 |
| Method 'setSourceDisplay' is not designed for extension - needs to be abstract, final or empty. | 88 |
| Missing a Javadoc comment. | 88 |
| Parameter sourceDisplay should be final. | 88 |
| 'sourceDisplay' hides a field. | 88 |
| Method 'getView' is not designed for extension - needs to be abstract, final or empty. | 92 |
| Missing a Javadoc comment. | 92 |
| Method 'setView' is not designed for extension - needs to be abstract, final or empty. | 96 |
| Missing a Javadoc comment. | 96 |
| Parameter view should be final. | 96 |
| 'view' hides a field. | 96 |
| Method 'getViewDisplayImage' is not designed for extension - needs to be abstract, final or empty. | 100 |
| Missing a Javadoc comment. | 100 |
| Method 'setViewDisplayImage' is not designed for extension - needs to be abstract, final or empty. | 104 |
| Missing a Javadoc comment. | 104 |
| Parameter viewDisplayImage should be final. | 104 |
| 'viewDisplayImage' hides a field. | 104 |
| Method 'getViewDisplayString' is not designed for extension - needs to be abstract, final or empty. | 108 |
| Missing a Javadoc comment. | 108 |
| Method 'setViewDisplayString' is not designed for extension - needs to be abstract, final or empty. | 112 |
| Missing a Javadoc comment. | 112 |
| Parameter viewDisplayString should be final. | 112 |
| 'viewDisplayString' hides a field. | 112 |
| Method 'getXmlComment' is not designed for extension - needs to be abstract, final or empty. | 116 |
| Missing a Javadoc comment. | 116 |
| Method 'setXmlComment' is not designed for extension - needs to be abstract, final or empty. | 120 |
| Missing a Javadoc comment. | 120 |
| Parameter xmlComment should be final. | 120 |
| 'xmlComment' hides a field. | 120 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 127 |
| Missing a Javadoc comment. | 127 |
| Parameter o should be final. | 127 |
| 'if' construct must use '{}'s. | 128 |
| 'if' construct must use '{}'s. | 129 |
| 'if' construct must use '{}'s. | 132 |
| Line is longer than 80 characters (found 101). | 132 |
| Avoid inline conditionals. | 132 |
| 'if' construct must use '{}'s. | 133 |
| Line is longer than 80 characters (found 117). | 133 |
| Avoid inline conditionals. | 133 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 138 |
| Missing a Javadoc comment. | 138 |
| Avoid inline conditionals. | 140 |
| '29' is a magic number. | 141 |
| Avoid inline conditionals. | 141 |
| Line is longer than 80 characters (found 83). | 147 |
| Method 'validate' is not designed for extension - needs to be abstract, final or empty. | 147 |
| Missing a Javadoc comment. | 147 |
| Parameter mapping should be final. | 147 |
| Parameter request should be final. | 147 |
| 'if' construct must use '{}'s. | 152 |
| Line is longer than 80 characters (found 86). | 152 |
| Line is longer than 80 characters (found 97). | 153 |
| Line contains a tab character. | 153 |
| 'if' construct must use '{}'s. | 155 |
| Line is longer than 80 characters (found 124). | 156 |
| Line contains a tab character. | 156 |
| 'if' construct must use '{}'s. | 157 |
| Line is longer than 80 characters (found 96). | 158 |
| Line contains a tab character. | 158 |
| Avoid inline conditionals. | 159 |
| Line is longer than 80 characters (found 118). | 163 |
| Missing a Javadoc comment. | 172 |
| Parameter request should be final. | 172 |
| Line is longer than 80 characters (found 103). | 174 |
| Violation | Message | Line |
|---|---|---|
| Unused import - java.util.Map. | 7 |
| Unused import - java.util.HashMap. | 8 |
| Unused import - uk.ac.ebi.intenz.domain.enzyme.DataComment. | 10 |
| Missing a Javadoc comment. | 20 |
| Missing a Javadoc comment. | 21 |
| Missing a Javadoc comment. | 22 |
| Missing a Javadoc comment. | 24 |
| '{' is not preceded with whitespace. | 24 |
| Missing a Javadoc comment. | 30 |
| Parameter dataCommentDTO should be final. | 30 |
| '{' is not preceded with whitespace. | 30 |
| Line is longer than 80 characters (found 91). | 36 |
| Method 'validate' is not designed for extension - needs to be abstract, final or empty. | 36 |
| Missing a Javadoc comment. | 36 |
| Parameter actionMapping should be final. | 36 |
| Parameter request should be final. | 36 |
| Line is longer than 80 characters (found 105). | 38 |
| '{' is not preceded with whitespace. | 39 |
| Avoid inline conditionals. | 44 |
| Method 'getXmlComment' is not designed for extension - needs to be abstract, final or empty. | 47 |
| Missing a Javadoc comment. | 47 |
| Method 'setXmlComment' is not designed for extension - needs to be abstract, final or empty. | 51 |
| Missing a Javadoc comment. | 51 |
| Parameter xmlComment should be final. | 51 |
| 'xmlComment' hides a field. | 51 |
| Method 'getDisplayComment' is not designed for extension - needs to be abstract, final or empty. | 55 |
| Missing a Javadoc comment. | 55 |
| Method 'setDisplayComment' is not designed for extension - needs to be abstract, final or empty. | 59 |
| Missing a Javadoc comment. | 59 |
| Parameter displayComment should be final. | 59 |
| 'displayComment' hides a field. | 59 |
| Method 'getId' is not designed for extension - needs to be abstract, final or empty. | 63 |
| Missing a Javadoc comment. | 63 |
| Method 'setId' is not designed for extension - needs to be abstract, final or empty. | 67 |
| Missing a Javadoc comment. | 67 |
| Parameter id should be final. | 67 |
| 'id' hides a field. | 67 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 18 |
| Line is longer than 80 characters (found 83). | 20 |
| Method 'validate' is not designed for extension - needs to be abstract, final or empty. | 20 |
| Missing a Javadoc comment. | 20 |
| Parameter mapping should be final. | 20 |
| Parameter request should be final. | 20 |
| 'if' construct must use '{}'s. | 22 |
| 'if' construct must use '{}'s. | 23 |
| Method 'getEc' is not designed for extension - needs to be abstract, final or empty. | 27 |
| Missing a Javadoc comment. | 27 |
| Method 'setEc' is not designed for extension - needs to be abstract, final or empty. | 31 |
| Missing a Javadoc comment. | 31 |
| Parameter ec should be final. | 31 |
| 'ec' hides a field. | 31 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 11 |
| Missing a Javadoc comment. | 12 |
| Line is longer than 80 characters (found 85). | 15 |
| Method 'getDescription' is not designed for extension - needs to be abstract, final or empty. | 17 |
| Missing a Javadoc comment. | 17 |
| Method 'setDescription' is not designed for extension - needs to be abstract, final or empty. | 21 |
| Missing a Javadoc comment. | 21 |
| Parameter description should be final. | 21 |
| 'description' hides a field. | 21 |
| Method 'getSubclasses' is not designed for extension - needs to be abstract, final or empty. | 25 |
| Missing a Javadoc comment. | 25 |
| Method 'setSubclasses' is not designed for extension - needs to be abstract, final or empty. | 29 |
| Missing a Javadoc comment. | 29 |
| Parameter subclasses should be final. | 29 |
| 'subclasses' hides a field. | 29 |
| Method 'getRowAt' is not designed for extension - needs to be abstract, final or empty. | 33 |
| Missing a Javadoc comment. | 33 |
| Parameter index should be final. | 33 |
| Violation | Message | Line |
|---|---|---|
| Unused import - java.sql.SQLException. | 10 |
| Unused import - uk.ac.ebi.intenz.domain.exceptions.EcException. | 37 |
| Unused import - uk.ac.ebi.rhea.mapper.MapperException. | 40 |
| Line is longer than 80 characters (found 109). | 43 |
| Line is longer than 80 characters (found 83). | 51 |
| Line is longer than 80 characters (found 84). | 52 |
| Line is longer than 80 characters (found 95). | 62 |
| Extra HTML tag found: </code></td> | 63 |
| Line is longer than 80 characters (found 112). | 68 |
| Extra HTML tag found: </code></td> | 69 |
| Line is longer than 80 characters (found 115). | 79 |
| Extra HTML tag found: </code></td> | 80 |
| Line is longer than 80 characters (found 114). | 85 |
| Extra HTML tag found: </code></td> | 86 |
| Line is longer than 80 characters (found 119). | 91 |
| Extra HTML tag found: </code></td> | 92 |
| Line is longer than 80 characters (found 102). | 97 |
| Extra HTML tag found: </code></td> | 98 |
| Line is longer than 80 characters (found 104). | 103 |
| Line is longer than 80 characters (found 125). | 104 |
| Extra HTML tag found: </code></td> | 105 |
| Line is longer than 80 characters (found 99). | 110 |
| Missing a Javadoc comment. | 135 |
| Missing a Javadoc comment. | 137 |
| Missing a Javadoc comment. | 138 |
| Missing a Javadoc comment. | 139 |
| Missing a Javadoc comment. | 140 |
| Missing a Javadoc comment. | 141 |
| Missing a Javadoc comment. | 142 |
| Missing a Javadoc comment. | 143 |
| Missing a Javadoc comment. | 144 |
| Missing a Javadoc comment. | 145 |
| Missing a Javadoc comment. | 146 |
| Missing a Javadoc comment. | 147 |
| Missing a Javadoc comment. | 148 |
| Missing a Javadoc comment. | 149 |
| Missing a Javadoc comment. | 150 |
| Missing a Javadoc comment. | 151 |
| Missing a Javadoc comment. | 152 |
| Missing a Javadoc comment. | 153 |
| Missing a Javadoc comment. | 155 |
| Missing a Javadoc comment. | 156 |
| Missing a Javadoc comment. | 157 |
| Missing a Javadoc comment. | 158 |
| Missing a Javadoc comment. | 159 |
| Missing a Javadoc comment. | 160 |
| Missing a Javadoc comment. | 162 |
| Missing a Javadoc comment. | 163 |
| Missing a Javadoc comment. | 164 |
| Missing a Javadoc comment. | 165 |
| Missing a Javadoc comment. | 166 |
| Missing a Javadoc comment. | 167 |
| Missing a Javadoc comment. | 168 |
| Missing a Javadoc comment. | 169 |
| Missing a Javadoc comment. | 171 |
| Method 'getXcharsView' is not designed for extension - needs to be abstract, final or empty. | 175 |
| Missing a Javadoc comment. | 175 |
| '(' is preceded with whitespace. | 175 |
| Method 'setXcharsView' is not designed for extension - needs to be abstract, final or empty. | 179 |
| Missing a Javadoc comment. | 179 |
| '(' is preceded with whitespace. | 179 |
| Parameter xcharsView should be final. | 179 |
| 'xcharsView' hides a field. | 179 |
| Method 'isActive' is not designed for extension - needs to be abstract, final or empty. | 183 |
| Missing a Javadoc comment. | 183 |
| Method 'setActive' is not designed for extension - needs to be abstract, final or empty. | 187 |
| Missing a Javadoc comment. | 187 |
| Parameter active should be final. | 187 |
| Missing a Javadoc comment. | 191 |
| Line is longer than 80 characters (found 83). | 199 |
| Line is longer than 80 characters (found 89). | 201 |
| Line is longer than 80 characters (found 91). | 202 |
| Missing a Javadoc comment. | 234 |
| Parameter enzymeDTO should be final. | 234 |
| 'commonNames' hides a field. | 257 |
| 'synonyms' hides a field. | 273 |
| 'cofactors' hides a field. | 281 |
| 'links' hides a field. | 289 |
| 'uniProtLinks' hides a field. | 297 |
| 'comments' hides a field. | 305 |
| 'references' hides a field. | 313 |
| Method 'getAllLinks' is not designed for extension - needs to be abstract, final or empty. | 324 |
| Missing a Javadoc comment. | 324 |
| Method 'getClassEc' is not designed for extension - needs to be abstract, final or empty. | 331 |
| Missing a Javadoc comment. | 331 |
| Method 'setClassEc' is not designed for extension - needs to be abstract, final or empty. | 335 |
| Missing a Javadoc comment. | 335 |
| Parameter classEc should be final. | 335 |
| 'classEc' hides a field. | 335 |
| Method 'getClassName' is not designed for extension - needs to be abstract, final or empty. | 339 |
| Missing a Javadoc comment. | 339 |
| Method 'setClassName' is not designed for extension - needs to be abstract, final or empty. | 343 |
| Missing a Javadoc comment. | 343 |
| Parameter className should be final. | 343 |
| 'className' hides a field. | 343 |
| Method 'getCofactors' is not designed for extension - needs to be abstract, final or empty. | 347 |
| Missing a Javadoc comment. | 347 |
| Method 'setCofactors' is not designed for extension - needs to be abstract, final or empty. | 351 |
| Missing a Javadoc comment. | 351 |
| Parameter cofactors should be final. | 351 |
| 'cofactors' hides a field. | 351 |
| Method 'getComments' is not designed for extension - needs to be abstract, final or empty. | 355 |
| Missing a Javadoc comment. | 355 |
| Method 'setComments' is not designed for extension - needs to be abstract, final or empty. | 359 |
| Missing a Javadoc comment. | 359 |
| Parameter comments should be final. | 359 |
| 'comments' hides a field. | 359 |
| Method 'getCommonNames' is not designed for extension - needs to be abstract, final or empty. | 363 |
| Missing a Javadoc comment. | 363 |
| Method 'setCommonNames' is not designed for extension - needs to be abstract, final or empty. | 367 |
| Missing a Javadoc comment. | 367 |
| Parameter commonNames should be final. | 367 |
| 'commonNames' hides a field. | 367 |
| Method 'getEc' is not designed for extension - needs to be abstract, final or empty. | 371 |
| Missing a Javadoc comment. | 371 |
| Method 'setEc' is not designed for extension - needs to be abstract, final or empty. | 375 |
| Missing a Javadoc comment. | 375 |
| Parameter ec should be final. | 375 |
| 'ec' hides a field. | 375 |
| Method 'isPreliminaryEc' is not designed for extension - needs to be abstract, final or empty. | 379 |
| Missing a Javadoc comment. | 379 |
| '{' is not preceded with whitespace. | 379 |
| Method 'getHistoryLine' is not designed for extension - needs to be abstract, final or empty. | 383 |
| Missing a Javadoc comment. | 383 |
| Method 'setHistoryLine' is not designed for extension - needs to be abstract, final or empty. | 387 |
| Missing a Javadoc comment. | 387 |
| Parameter historyLine should be final. | 387 |
| 'historyLine' hides a field. | 387 |
| Method 'getId' is not designed for extension - needs to be abstract, final or empty. | 391 |
| Missing a Javadoc comment. | 391 |
| Method 'setId' is not designed for extension - needs to be abstract, final or empty. | 395 |
| Missing a Javadoc comment. | 395 |
| Parameter id should be final. | 395 |
| 'id' hides a field. | 395 |
| Method 'getLatestHistoryAfterId' is not designed for extension - needs to be abstract, final or empty. | 399 |
| Missing a Javadoc comment. | 399 |
| Method 'setLatestHistoryAfterId' is not designed for extension - needs to be abstract, final or empty. | 403 |
| Missing a Javadoc comment. | 403 |
| Parameter latestHistoryAfterId should be final. | 403 |
| 'latestHistoryAfterId' hides a field. | 403 |
| Method 'getLatestHistoryBeforeId' is not designed for extension - needs to be abstract, final or empty. | 407 |
| Missing a Javadoc comment. | 407 |
| Method 'setLatestHistoryBeforeId' is not designed for extension - needs to be abstract, final or empty. | 411 |
| Missing a Javadoc comment. | 411 |
| Parameter latestHistoryBeforeId should be final. | 411 |
| 'latestHistoryBeforeId' hides a field. | 411 |
| Method 'getLatestHistoryEventClass' is not designed for extension - needs to be abstract, final or empty. | 415 |
| Missing a Javadoc comment. | 415 |
| Method 'setLatestHistoryEventClass' is not designed for extension - needs to be abstract, final or empty. | 419 |
| Missing a Javadoc comment. | 419 |
| Parameter latestHistoryEventClass should be final. | 419 |
| 'latestHistoryEventClass' hides a field. | 419 |
| Method 'getLatestHistoryEventGroupId' is not designed for extension - needs to be abstract, final or empty. | 423 |
| Missing a Javadoc comment. | 423 |
| Method 'setLatestHistoryEventGroupId' is not designed for extension - needs to be abstract, final or empty. | 427 |
| Missing a Javadoc comment. | 427 |
| Parameter latestHistoryEventGroupId should be final. | 427 |
| 'latestHistoryEventGroupId' hides a field. | 427 |
| Method 'getLatestHistoryEventId' is not designed for extension - needs to be abstract, final or empty. | 431 |
| Missing a Javadoc comment. | 431 |
| Method 'setLatestHistoryEventId' is not designed for extension - needs to be abstract, final or empty. | 435 |
| Missing a Javadoc comment. | 435 |
| Parameter latestHistoryEventId should be final. | 435 |
| 'latestHistoryEventId' hides a field. | 435 |
| Method 'getLatestHistoryEventNote' is not designed for extension - needs to be abstract, final or empty. | 439 |
| Missing a Javadoc comment. | 439 |
| Method 'setLatestHistoryEventNote' is not designed for extension - needs to be abstract, final or empty. | 443 |
| Missing a Javadoc comment. | 443 |
| Parameter latestHistoryEventNote should be final. | 443 |
| 'latestHistoryEventNote' hides a field. | 443 |
| Method 'getLinks' is not designed for extension - needs to be abstract, final or empty. | 447 |
| Missing a Javadoc comment. | 447 |
| Method 'setLinks' is not designed for extension - needs to be abstract, final or empty. | 451 |
| Missing a Javadoc comment. | 451 |
| Parameter links should be final. | 451 |
| 'links' hides a field. | 451 |
| Method 'getNote' is not designed for extension - needs to be abstract, final or empty. | 455 |
| Missing a Javadoc comment. | 455 |
| Method 'setNote' is not designed for extension - needs to be abstract, final or empty. | 459 |
| Missing a Javadoc comment. | 459 |
| Parameter note should be final. | 459 |
| 'note' hides a field. | 459 |
| Method 'getReactionDtos' is not designed for extension - needs to be abstract, final or empty. | 463 |
| Missing a Javadoc comment. | 463 |
| Method 'setReactionDtos' is not designed for extension - needs to be abstract, final or empty. | 467 |
| Missing a Javadoc comment. | 467 |
| Parameter reactions should be final. | 467 |
| Method 'getReferences' is not designed for extension - needs to be abstract, final or empty. | 471 |
| Missing a Javadoc comment. | 471 |
| Method 'setReferences' is not designed for extension - needs to be abstract, final or empty. | 475 |
| Missing a Javadoc comment. | 475 |
| Parameter references should be final. | 475 |
| 'references' hides a field. | 475 |
| Method 'getSource' is not designed for extension - needs to be abstract, final or empty. | 479 |
| Missing a Javadoc comment. | 479 |
| Method 'setSource' is not designed for extension - needs to be abstract, final or empty. | 483 |
| Missing a Javadoc comment. | 483 |
| Parameter source should be final. | 483 |
| 'source' hides a field. | 483 |
| Method 'getStatusCode' is not designed for extension - needs to be abstract, final or empty. | 487 |
| Missing a Javadoc comment. | 487 |
| Method 'setStatusCode' is not designed for extension - needs to be abstract, final or empty. | 491 |
| Missing a Javadoc comment. | 491 |
| Parameter statusCode should be final. | 491 |
| 'statusCode' hides a field. | 491 |
| Method 'getStatusText' is not designed for extension - needs to be abstract, final or empty. | 495 |
| Missing a Javadoc comment. | 495 |
| Method 'setStatusText' is not designed for extension - needs to be abstract, final or empty. | 499 |
| Missing a Javadoc comment. | 499 |
| Parameter statusText should be final. | 499 |
| 'statusText' hides a field. | 499 |
| Method 'getSubSubclassEc' is not designed for extension - needs to be abstract, final or empty. | 503 |
| Missing a Javadoc comment. | 503 |
| Method 'setSubSubclassEc' is not designed for extension - needs to be abstract, final or empty. | 507 |
| Missing a Javadoc comment. | 507 |
| Parameter subSubclassEc should be final. | 507 |
| 'subSubclassEc' hides a field. | 507 |
| Method 'getSubSubclassName' is not designed for extension - needs to be abstract, final or empty. | 511 |
| Missing a Javadoc comment. | 511 |
| Method 'setSubSubclassName' is not designed for extension - needs to be abstract, final or empty. | 515 |
| Missing a Javadoc comment. | 515 |
| Parameter subSubclassName should be final. | 515 |
| 'subSubclassName' hides a field. | 515 |
| Method 'getSubclassEc' is not designed for extension - needs to be abstract, final or empty. | 519 |
| Missing a Javadoc comment. | 519 |
| Method 'setSubclassEc' is not designed for extension - needs to be abstract, final or empty. | 523 |
| Missing a Javadoc comment. | 523 |
| Parameter subclassEc should be final. | 523 |
| 'subclassEc' hides a field. | 523 |
| Method 'getSubclassName' is not designed for extension - needs to be abstract, final or empty. | 527 |
| Missing a Javadoc comment. | 527 |
| Method 'setSubclassName' is not designed for extension - needs to be abstract, final or empty. | 531 |
| Missing a Javadoc comment. | 531 |
| Parameter subclassName should be final. | 531 |
| 'subclassName' hides a field. | 531 |
| Method 'getSynonyms' is not designed for extension - needs to be abstract, final or empty. | 535 |
| Missing a Javadoc comment. | 535 |
| Method 'setSynonyms' is not designed for extension - needs to be abstract, final or empty. | 539 |
| Missing a Javadoc comment. | 539 |
| Parameter synonyms should be final. | 539 |
| 'synonyms' hides a field. | 539 |
| Method 'getSystematicName' is not designed for extension - needs to be abstract, final or empty. | 543 |
| Missing a Javadoc comment. | 543 |
| Method 'setSystematicName' is not designed for extension - needs to be abstract, final or empty. | 547 |
| Missing a Javadoc comment. | 547 |
| Parameter systematicName should be final. | 547 |
| 'systematicName' hides a field. | 547 |
| Method 'getTransferredEc' is not designed for extension - needs to be abstract, final or empty. | 551 |
| Missing a Javadoc comment. | 551 |
| Method 'setTransferredEc' is not designed for extension - needs to be abstract, final or empty. | 555 |
| Missing a Javadoc comment. | 555 |
| Parameter transferredEc should be final. | 555 |
| 'transferredEc' hides a field. | 555 |
| Method 'getTransferredToEc' is not designed for extension - needs to be abstract, final or empty. | 559 |
| Missing a Javadoc comment. | 559 |
| Method 'setTransferredToEc' is not designed for extension - needs to be abstract, final or empty. | 563 |
| Missing a Javadoc comment. | 563 |
| Parameter transferredToEc should be final. | 563 |
| 'transferredToEc' hides a field. | 563 |
| Method 'getUniProtLinks' is not designed for extension - needs to be abstract, final or empty. | 567 |
| Missing a Javadoc comment. | 567 |
| Method 'setUniProtLinks' is not designed for extension - needs to be abstract, final or empty. | 571 |
| Missing a Javadoc comment. | 571 |
| Parameter uniProtLinks should be final. | 571 |
| 'uniProtLinks' hides a field. | 571 |
| Line is longer than 80 characters (found 85). | 575 |
| Method 'getUowId' is not designed for extension - needs to be abstract, final or empty. | 577 |
| Missing a Javadoc comment. | 577 |
| Method 'setUowId' is not designed for extension - needs to be abstract, final or empty. | 581 |
| Missing a Javadoc comment. | 581 |
| Parameter uowId should be final. | 581 |
| 'uowId' hides a field. | 581 |
| Method 'getCofactor' is not designed for extension - needs to be abstract, final or empty. | 587 |
| Missing a Javadoc comment. | 587 |
| Parameter index should be final. | 587 |
| Method 'getComment' is not designed for extension - needs to be abstract, final or empty. | 591 |
| Missing a Javadoc comment. | 591 |
| Parameter index should be final. | 591 |
| Method 'getCommonName' is not designed for extension - needs to be abstract, final or empty. | 595 |
| Missing a Javadoc comment. | 595 |
| Parameter index should be final. | 595 |
| Method 'getLink' is not designed for extension - needs to be abstract, final or empty. | 599 |
| Missing a Javadoc comment. | 599 |
| Parameter index should be final. | 599 |
| Method 'getReactionDto' is not designed for extension - needs to be abstract, final or empty. | 603 |
| Missing a Javadoc comment. | 603 |
| Parameter index should be final. | 603 |
| Method 'getReference' is not designed for extension - needs to be abstract, final or empty. | 607 |
| Missing a Javadoc comment. | 607 |
| Parameter index should be final. | 607 |
| Method 'getSynonym' is not designed for extension - needs to be abstract, final or empty. | 611 |
| Missing a Javadoc comment. | 611 |
| Parameter index should be final. | 611 |
| Method 'getUniProtLink' is not designed for extension - needs to be abstract, final or empty. | 615 |
| Missing a Javadoc comment. | 615 |
| Parameter index should be final. | 615 |
| Method 'getLinks' is not designed for extension - needs to be abstract, final or empty. | 619 |
| Missing a Javadoc comment. | 619 |
| Parameter dbCode should be final. | 619 |
| '{' is not preceded with whitespace. | 619 |
| '{' is not preceded with whitespace. | 621 |
| 'if' construct must use '{}'s. | 623 |
| Method 'getGoLinks' is not designed for extension - needs to be abstract, final or empty. | 629 |
| Missing a Javadoc comment. | 629 |
| '{' is not preceded with whitespace. | 629 |
| Method 'getCasLinks' is not designed for extension - needs to be abstract, final or empty. | 633 |
| Missing a Javadoc comment. | 633 |
| '{' is not preceded with whitespace. | 633 |
| Parameter mapping should be final. | 638 |
| Parameter request should be final. | 638 |
| Line contains a tab character. | 642 |
| Method 'validate' is not designed for extension - needs to be abstract, final or empty. | 642 |
| Line contains a tab character. | 643 |
| Parameter mapping should be final. | 643 |
| Line contains a tab character. | 644 |
| Parameter request should be final. | 644 |
| Line contains a tab character. | 645 |
| Line contains a tab character. | 646 |
| Line contains a tab character. | 647 |
| Line contains a tab character. | 648 |
| Line contains a tab character. | 650 |
| Line contains a tab character. | 652 |
| Line contains a tab character. | 653 |
| Line contains a tab character. | 655 |
| Line contains a tab character. | 656 |
| Line contains a tab character. | 658 |
| Line contains a tab character. | 659 |
| Line contains a tab character. | 661 |
| Line contains a tab character. | 662 |
| Line contains a tab character. | 664 |
| Line contains a tab character. | 665 |
| Line contains a tab character. | 667 |
| Line contains a tab character. | 668 |
| Line contains a tab character. | 670 |
| Line contains a tab character. | 671 |
| Line contains a tab character. | 673 |
| Line contains a tab character. | 674 |
| Line contains a tab character. | 676 |
| Line contains a tab character. | 677 |
| Line contains a tab character. | 679 |
| Line contains a tab character. | 680 |
| Line contains a tab character. | 681 |
| Line contains a tab character. | 682 |
| Line contains a tab character. | 684 |
| Line contains a tab character. | 685 |
| Line contains a tab character. | 686 |
| Line is longer than 80 characters (found 83). | 687 |
| Line contains a tab character. | 687 |
| Line contains a tab character. | 688 |
| Line contains a tab character. | 690 |
| Avoid inline conditionals. | 690 |
| Line contains a tab character. | 691 |
| Line contains a tab character. | 693 |
| Line contains a tab character. | 694 |
| Line contains a tab character. | 695 |
| Line contains a tab character. | 696 |
| Line contains a tab character. | 697 |
| Line contains a tab character. | 698 |
| Expected an @return tag. | 699 |
| Line contains a tab character. | 699 |
| Parameter request should be final. | 699 |
| Expected @param tag for 'request'. | 699 |
| Line contains a tab character. | 700 |
| Parameter errors should be final. | 700 |
| Expected @param tag for 'errors'. | 700 |
| Line contains a tab character. | 701 |
| Line contains a tab character. | 702 |
| 'if' construct must use '{}'s. | 703 |
| Line contains a tab character. | 703 |
| Line contains a tab character. | 704 |
| Line is longer than 80 characters (found 88). | 705 |
| Line contains a tab character. | 705 |
| Line contains a tab character. | 706 |
| Line contains a tab character. | 707 |
| Line is longer than 80 characters (found 91). | 708 |
| Line contains a tab character. | 708 |
| Line contains a tab character. | 709 |
| Line contains a tab character. | 710 |
| Line is longer than 80 characters (found 87). | 711 |
| Line contains a tab character. | 711 |
| Line is longer than 80 characters (found 93). | 712 |
| Line contains a tab character. | 712 |
| Line is longer than 80 characters (found 110). | 713 |
| Line contains a tab character. | 713 |
| Line contains a tab character. | 714 |
| Line contains a tab character. | 715 |
| Line is longer than 80 characters (found 96). | 716 |
| Line contains a tab character. | 716 |
| Line is longer than 80 characters (found 112). | 717 |
| Line contains a tab character. | 717 |
| Line contains a tab character. | 718 |
| Line is longer than 80 characters (found 108). | 719 |
| Line contains a tab character. | 719 |
| Line is longer than 80 characters (found 109). | 720 |
| Line contains a tab character. | 720 |
| Line contains a tab character. | 721 |
| Line contains a tab character. | 722 |
| Line is longer than 80 characters (found 88). | 723 |
| Line contains a tab character. | 723 |
| Line is longer than 80 characters (found 105). | 724 |
| Line contains a tab character. | 724 |
| Line contains a tab character. | 725 |
| Line contains a tab character. | 726 |
| Line contains a tab character. | 727 |
| Line is longer than 80 characters (found 98). | 728 |
| Line contains a tab character. | 728 |
| Line contains a tab character. | 729 |
| Line contains a tab character. | 730 |
| Line contains a tab character. | 731 |
| Line contains a tab character. | 732 |
| Line is longer than 80 characters (found 109). | 740 |
| Line is longer than 80 characters (found 87). | 742 |
| Line is longer than 80 characters (found 108). | 749 |
| Parameter errors should be final. | 749 |
| Parameter mapping should be final. | 749 |
| Parameter request should be final. | 749 |
| '&&' should be on a new line. | 762 |
| Line is longer than 80 characters (found 86). | 763 |
| '||' should be on a new line. | 763 |
| Line is longer than 80 characters (found 93). | 764 |
| Line is longer than 80 characters (found 91). | 766 |
| 'else' construct must use '{}'s. | 768 |
| Line is longer than 80 characters (found 105). | 780 |
| Line is longer than 80 characters (found 105). | 787 |
| Parameter errors should be final. | 787 |
| Parameter mapping should be final. | 787 |
| Parameter request should be final. | 787 |
| Line is longer than 80 characters (found 82). | 806 |
| Parameter errors should be final. | 806 |
| Parameter request should be final. | 806 |
| Line is longer than 80 characters (found 120). | 813 |
| Line is longer than 80 characters (found 113). | 820 |
| Line is longer than 80 characters (found 119). | 825 |
| Line is longer than 80 characters (found 106). | 841 |
| Line is longer than 80 characters (found 106). | 848 |
| Parameter errors should be final. | 848 |
| Parameter mapping should be final. | 848 |
| Parameter request should be final. | 848 |
| Line is longer than 80 characters (found 84). | 856 |
| Line is longer than 80 characters (found 106). | 872 |
| Line is longer than 80 characters (found 108). | 879 |
| Line is longer than 80 characters (found 105). | 899 |
| Line is longer than 80 characters (found 105). | 906 |
| Parameter errors should be final. | 906 |
| Parameter mapping should be final. | 906 |
| Parameter request should be final. | 906 |
| Line is longer than 80 characters (found 102). | 927 |
| Line is longer than 80 characters (found 101). | 928 |
| Line is longer than 80 characters (found 85). | 930 |
| Line is longer than 80 characters (found 101). | 932 |
| Line is longer than 80 characters (found 102). | 939 |
| Parameter errors should be final. | 939 |
| Parameter mapping should be final. | 939 |
| Parameter request should be final. | 939 |
| Line is longer than 80 characters (found 84). | 949 |
| Line is longer than 80 characters (found 94). | 955 |
| Line is longer than 80 characters (found 94). | 956 |
| Line is longer than 80 characters (found 86). | 957 |
| Line is longer than 80 characters (found 82). | 960 |
| Line is longer than 80 characters (found 132). | 961 |
| '{' is not preceded with whitespace. | 961 |
| Line is longer than 80 characters (found 87). | 962 |
| Line is longer than 80 characters (found 97). | 966 |
| Line is longer than 80 characters (found 89). | 972 |
| Line is longer than 80 characters (found 94). | 976 |
| Line is longer than 80 characters (found 94). | 977 |
| '||' should be on a new line. | 977 |
| Line is longer than 80 characters (found 84). | 978 |
| Line is longer than 80 characters (found 86). | 979 |
| Line is longer than 80 characters (found 98). | 983 |
| Line is longer than 80 characters (found 94). | 984 |
| Line is longer than 80 characters (found 92). | 985 |
| Line is longer than 80 characters (found 107). | 988 |
| Line contains a tab character. | 988 |
| Line is longer than 80 characters (found 98). | 991 |
| Line is longer than 80 characters (found 84). | 992 |
| Line is longer than 80 characters (found 91). | 993 |
| Line is longer than 80 characters (found 103). | 998 |
| '8080' is a magic number. | 998 |
| Line is longer than 80 characters (found 87). | 999 |
| '{' is not preceded with whitespace. | 1000 |
| Line is longer than 80 characters (found 94). | 1001 |
| Line has trailing spaces. | 1002 |
| Line contains a tab character. | 1002 |
| Line is longer than 80 characters (found 90). | 1005 |
| Line is longer than 80 characters (found 101). | 1015 |
| Line is longer than 80 characters (found 102). | 1018 |
| Line is longer than 80 characters (found 109). | 1025 |
| Parameter errors should be final. | 1025 |
| Parameter mapping should be final. | 1025 |
| Parameter request should be final. | 1025 |
| Line is longer than 80 characters (found 107). | 1042 |
| Line is longer than 80 characters (found 107). | 1049 |
| Parameter errors should be final. | 1049 |
| Parameter mapping should be final. | 1049 |
| Parameter request should be final. | 1049 |
| Missing a Javadoc comment. | 1062 |
| Parameter names should be final. | 1062 |
| Line is longer than 80 characters (found 88). | 1066 |
| Missing a Javadoc comment. | 1073 |
| Line is longer than 80 characters (found 118). | 1076 |
| Line is longer than 80 characters (found 104). | 1086 |
| Line is longer than 80 characters (found 96). | 1102 |
| Missing a Javadoc comment. | 1109 |
| Line is longer than 80 characters (found 88). | 1112 |
| Missing a Javadoc comment. | 1119 |
| Missing a Javadoc comment. | 1130 |
| Parameter errors should be final. | 1130 |
| Line is longer than 80 characters (found 102). | 1134 |
| Line is longer than 80 characters (found 103). | 1151 |
| Line is longer than 80 characters (found 93). | 1152 |
| 'if' construct must use '{}'s. | 1157 |
| Missing a Javadoc comment. | 1167 |
| Parameter list should be final. | 1167 |
| Line is longer than 80 characters (found 87). | 1172 |
| Line is longer than 80 characters (found 118). | 1180 |
| Line is longer than 80 characters (found 93). | 1182 |
| Line contains a tab character. | 1185 |
| '?' is not preceded with whitespace. | 1185 |
| '?' should be on a new line. | 1185 |
| Avoid inline conditionals. | 1185 |
| Line contains a tab character. | 1186 |
| Missing a Javadoc comment. | 1191 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 19 |
| Missing a Javadoc comment. | 20 |
| Missing a Javadoc comment. | 21 |
| Missing a Javadoc comment. | 22 |
| Missing a Javadoc comment. | 23 |
| Missing a Javadoc comment. | 24 |
| Missing a Javadoc comment. | 25 |
| Missing a Javadoc comment. | 26 |
| Missing a Javadoc comment. | 27 |
| Missing a Javadoc comment. | 28 |
| Missing a Javadoc comment. | 29 |
| Missing a Javadoc comment. | 33 |
| Line is longer than 80 characters (found 137). | 43 |
| Missing a Javadoc comment. | 47 |
| Parameter enzymeLinkDTO should be final. | 47 |
| Method 'getAccession' is not designed for extension - needs to be abstract, final or empty. | 63 |
| Missing a Javadoc comment. | 63 |
| Method 'setAccession' is not designed for extension - needs to be abstract, final or empty. | 67 |
| Missing a Javadoc comment. | 67 |
| Parameter accession should be final. | 67 |
| 'accession' hides a field. | 67 |
| Method 'getDatabaseCode' is not designed for extension - needs to be abstract, final or empty. | 71 |
| Missing a Javadoc comment. | 71 |
| Method 'setDatabaseCode' is not designed for extension - needs to be abstract, final or empty. | 75 |
| Missing a Javadoc comment. | 75 |
| Parameter databaseCode should be final. | 75 |
| 'databaseCode' hides a field. | 75 |
| Method 'getDatabaseName' is not designed for extension - needs to be abstract, final or empty. | 79 |
| Missing a Javadoc comment. | 79 |
| Method 'setDatabaseName' is not designed for extension - needs to be abstract, final or empty. | 88 |
| Parameter databaseName should be final. | 88 |
| 'databaseName' hides a field. | 88 |
| Expected @param tag for 'databaseName'. | 88 |
| Method 'getName' is not designed for extension - needs to be abstract, final or empty. | 93 |
| Missing a Javadoc comment. | 93 |
| 'if' construct must use '{}'s. | 95 |
| Line is longer than 80 characters (found 81). | 95 |
| 'if' is not followed by whitespace. | 95 |
| '(' is followed by whitespace. | 95 |
| Method 'setName' is not designed for extension - needs to be abstract, final or empty. | 100 |
| Missing a Javadoc comment. | 100 |
| Parameter name should be final. | 100 |
| 'name' hides a field. | 100 |
| Method 'getSource' is not designed for extension - needs to be abstract, final or empty. | 104 |
| Missing a Javadoc comment. | 104 |
| Method 'setSource' is not designed for extension - needs to be abstract, final or empty. | 108 |
| Missing a Javadoc comment. | 108 |
| Parameter source should be final. | 108 |
| 'source' hides a field. | 108 |
| Method 'getSourceDisplay' is not designed for extension - needs to be abstract, final or empty. | 112 |
| Missing a Javadoc comment. | 112 |
| Method 'setSourceDisplay' is not designed for extension - needs to be abstract, final or empty. | 116 |
| Missing a Javadoc comment. | 116 |
| Parameter sourceDisplay should be final. | 116 |
| 'sourceDisplay' hides a field. | 116 |
| Method 'getUrl' is not designed for extension - needs to be abstract, final or empty. | 120 |
| Missing a Javadoc comment. | 120 |
| Method 'setUrl' is not designed for extension - needs to be abstract, final or empty. | 124 |
| Missing a Javadoc comment. | 124 |
| Parameter url should be final. | 124 |
| 'url' hides a field. | 124 |
| Method 'getView' is not designed for extension - needs to be abstract, final or empty. | 128 |
| Missing a Javadoc comment. | 128 |
| Method 'setView' is not designed for extension - needs to be abstract, final or empty. | 132 |
| Missing a Javadoc comment. | 132 |
| Parameter view should be final. | 132 |
| 'view' hides a field. | 132 |
| Method 'getViewDisplayImage' is not designed for extension - needs to be abstract, final or empty. | 136 |
| Missing a Javadoc comment. | 136 |
| Method 'setViewDisplayImage' is not designed for extension - needs to be abstract, final or empty. | 140 |
| Missing a Javadoc comment. | 140 |
| Parameter viewDisplayImage should be final. | 140 |
| 'viewDisplayImage' hides a field. | 140 |
| Method 'getViewDisplayString' is not designed for extension - needs to be abstract, final or empty. | 144 |
| Missing a Javadoc comment. | 144 |
| Method 'setViewDisplayString' is not designed for extension - needs to be abstract, final or empty. | 148 |
| Missing a Javadoc comment. | 148 |
| Parameter viewDisplayString should be final. | 148 |
| 'viewDisplayString' hides a field. | 148 |
| Method 'getDataComment' is not designed for extension - needs to be abstract, final or empty. | 152 |
| Missing a Javadoc comment. | 152 |
| Method 'setDataComment' is not designed for extension - needs to be abstract, final or empty. | 156 |
| Missing a Javadoc comment. | 156 |
| Parameter dataComment should be final. | 156 |
| 'dataComment' hides a field. | 156 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 163 |
| Missing a Javadoc comment. | 163 |
| Parameter o should be final. | 163 |
| 'if' construct must use '{}'s. | 164 |
| 'if' construct must use '{}'s. | 165 |
| 'if' construct must use '{}'s. | 169 |
| Line is longer than 80 characters (found 119). | 169 |
| Avoid inline conditionals. | 169 |
| 'if' construct must use '{}'s. | 170 |
| Line is longer than 80 characters (found 131). | 170 |
| Avoid inline conditionals. | 170 |
| 'if' construct must use '{}'s. | 171 |
| Line is longer than 80 characters (found 99). | 171 |
| Avoid inline conditionals. | 171 |
| 'if' construct must use '{}'s. | 172 |
| Line is longer than 80 characters (found 95). | 172 |
| Avoid inline conditionals. | 172 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 177 |
| Missing a Javadoc comment. | 177 |
| Avoid inline conditionals. | 179 |
| '29' is a magic number. | 180 |
| Avoid inline conditionals. | 180 |
| '29' is a magic number. | 181 |
| Avoid inline conditionals. | 181 |
| '29' is a magic number. | 182 |
| Avoid inline conditionals. | 182 |
| Method 'toString' is not designed for extension - needs to be abstract, final or empty. | 186 |
| Missing a Javadoc comment. | 186 |
| Line is longer than 80 characters (found 124). | 228 |
| Line is longer than 80 characters (found 134). | 229 |
| Unused @throws tag for 'NullPointerException'. | 233 |
| Method 'compareTo' is not designed for extension - needs to be abstract, final or empty. | 235 |
| Parameter o should be final. | 235 |
| 'if' construct must use '{}'s. | 236 |
| Line is longer than 80 characters (found 85). | 236 |
| Method 'reset' is not designed for extension - needs to be abstract, final or empty. | 254 |
| Missing a Javadoc comment. | 254 |
| Parameter mapping should be final. | 254 |
| Parameter request should be final. | 254 |
| Line is longer than 80 characters (found 83). | 267 |
| Method 'validate' is not designed for extension - needs to be abstract, final or empty. | 267 |
| Missing a Javadoc comment. | 267 |
| Parameter mapping should be final. | 267 |
| Parameter request should be final. | 267 |
| Line is longer than 80 characters (found 118). | 274 |
| Missing a Javadoc comment. | 283 |
| Line is longer than 80 characters (found 83). | 284 |
| 'if' is not followed by whitespace. | 284 |
| Must have at least one statement. | 284 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 20 |
| Line is longer than 80 characters (found 83). | 22 |
| Method 'validate' is not designed for extension - needs to be abstract, final or empty. | 22 |
| Missing a Javadoc comment. | 22 |
| Parameter mapping should be final. | 22 |
| Parameter request should be final. | 22 |
| Line has trailing spaces. | 29 |
| Line is longer than 80 characters (found 85). | 30 |
| Method 'getResult' is not designed for extension - needs to be abstract, final or empty. | 32 |
| Missing a Javadoc comment. | 32 |
| Method 'setResult' is not designed for extension - needs to be abstract, final or empty. | 36 |
| Missing a Javadoc comment. | 36 |
| Parameter result should be final. | 36 |
| 'result' hides a field. | 36 |
| Method 'getRowAt' is not designed for extension - needs to be abstract, final or empty. | 40 |
| Missing a Javadoc comment. | 40 |
| Parameter index should be final. | 40 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 25 |
| Missing a Javadoc comment. | 26 |
| Missing a Javadoc comment. | 27 |
| Missing a Javadoc comment. | 28 |
| Missing a Javadoc comment. | 29 |
| Missing a Javadoc comment. | 30 |
| Missing a Javadoc comment. | 31 |
| Missing a Javadoc comment. | 32 |
| Missing a Javadoc comment. | 33 |
| Missing a Javadoc comment. | 34 |
| Missing a Javadoc comment. | 35 |
| Missing a Javadoc comment. | 37 |
| Line is longer than 80 characters (found 153). | 48 |
| Missing a Javadoc comment. | 51 |
| Parameter enzymeNameDTO should be final. | 51 |
| Line is longer than 80 characters (found 83). | 73 |
| Method 'validate' is not designed for extension - needs to be abstract, final or empty. | 73 |
| Parameter mapping should be final. | 73 |
| Parameter request should be final. | 73 |
| Line is longer than 80 characters (found 103). | 78 |
| 'if' construct must use '{}'s. | 81 |
| Line is longer than 80 characters (found 83). | 81 |
| Line is longer than 80 characters (found 88). | 82 |
| Line contains a tab character. | 82 |
| 'if' construct must use '{}'s. | 84 |
| Line contains a tab character. | 85 |
| Line is longer than 80 characters (found 111). | 86 |
| Line contains a tab character. | 86 |
| 'if' construct must use '{}'s. | 87 |
| Line is longer than 80 characters (found 87). | 88 |
| Line contains a tab character. | 88 |
| Avoid inline conditionals. | 89 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 92 |
| Missing a Javadoc comment. | 92 |
| Parameter o should be final. | 92 |
| 'if' construct must use '{}'s. | 93 |
| 'if' construct must use '{}'s. | 94 |
| 'if' construct must use '{}'s. | 98 |
| Line is longer than 80 characters (found 107). | 98 |
| Avoid inline conditionals. | 98 |
| 'if' construct must use '{}'s. | 99 |
| Line is longer than 80 characters (found 99). | 99 |
| Avoid inline conditionals. | 99 |
| 'if' construct must use '{}'s. | 100 |
| Line is longer than 80 characters (found 111). | 100 |
| Avoid inline conditionals. | 100 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 105 |
| Missing a Javadoc comment. | 105 |
| Avoid inline conditionals. | 107 |
| '29' is a magic number. | 108 |
| Avoid inline conditionals. | 108 |
| '29' is a magic number. | 109 |
| Avoid inline conditionals. | 109 |
| Line is longer than 80 characters (found 85). | 114 |
| Method 'getName' is not designed for extension - needs to be abstract, final or empty. | 116 |
| Missing a Javadoc comment. | 116 |
| Method 'setName' is not designed for extension - needs to be abstract, final or empty. | 120 |
| Missing a Javadoc comment. | 120 |
| Parameter name should be final. | 120 |
| 'name' hides a field. | 120 |
| Method 'getXmlName' is not designed for extension - needs to be abstract, final or empty. | 124 |
| Missing a Javadoc comment. | 124 |
| Method 'setXmlName' is not designed for extension - needs to be abstract, final or empty. | 128 |
| Missing a Javadoc comment. | 128 |
| Parameter xmlName should be final. | 128 |
| 'xmlName' hides a field. | 128 |
| Method 'getType' is not designed for extension - needs to be abstract, final or empty. | 132 |
| Missing a Javadoc comment. | 132 |
| Method 'setType' is not designed for extension - needs to be abstract, final or empty. | 136 |
| Missing a Javadoc comment. | 136 |
| Parameter type should be final. | 136 |
| 'type' hides a field. | 136 |
| Method 'getQualifier' is not designed for extension - needs to be abstract, final or empty. | 140 |
| Missing a Javadoc comment. | 140 |
| Method 'setQualifier' is not designed for extension - needs to be abstract, final or empty. | 144 |
| Missing a Javadoc comment. | 144 |
| Parameter qualifier should be final. | 144 |
| 'qualifier' hides a field. | 144 |
| Line is longer than 80 characters (found 101). | 147 |
| 'if' construct must use '{}'s. | 148 |
| Line is longer than 80 characters (found 90). | 148 |
| Method 'getQualifierDisplay' is not designed for extension - needs to be abstract, final or empty. | 153 |
| Missing a Javadoc comment. | 153 |
| Method 'setQualifierDisplay' is not designed for extension - needs to be abstract, final or empty. | 157 |
| Missing a Javadoc comment. | 157 |
| Parameter qualifierDisplay should be final. | 157 |
| 'qualifierDisplay' hides a field. | 157 |
| Method 'getOrderIn' is not designed for extension - needs to be abstract, final or empty. | 161 |
| Missing a Javadoc comment. | 161 |
| Method 'setOrderIn' is not designed for extension - needs to be abstract, final or empty. | 165 |
| Missing a Javadoc comment. | 165 |
| Parameter orderIn should be final. | 165 |
| 'orderIn' hides a field. | 165 |
| Method 'getSource' is not designed for extension - needs to be abstract, final or empty. | 169 |
| Missing a Javadoc comment. | 169 |
| Method 'setSource' is not designed for extension - needs to be abstract, final or empty. | 173 |
| Missing a Javadoc comment. | 173 |
| Parameter source should be final. | 173 |
| 'source' hides a field. | 173 |
| Method 'getView' is not designed for extension - needs to be abstract, final or empty. | 180 |
| Missing a Javadoc comment. | 180 |
| Method 'setView' is not designed for extension - needs to be abstract, final or empty. | 184 |
| Missing a Javadoc comment. | 184 |
| Parameter view should be final. | 184 |
| 'view' hides a field. | 184 |
| 'if' construct must use '{}'s. | 186 |
| Method 'getSourceDisplay' is not designed for extension - needs to be abstract, final or empty. | 189 |
| Missing a Javadoc comment. | 189 |
| Method 'setSourceDisplay' is not designed for extension - needs to be abstract, final or empty. | 193 |
| Missing a Javadoc comment. | 193 |
| Parameter sourceDisplay should be final. | 193 |
| 'sourceDisplay' hides a field. | 193 |
| Method 'getViewDisplayString' is not designed for extension - needs to be abstract, final or empty. | 197 |
| Missing a Javadoc comment. | 197 |
| Method 'setViewDisplayString' is not designed for extension - needs to be abstract, final or empty. | 201 |
| Missing a Javadoc comment. | 201 |
| Parameter viewDisplayString should be final. | 201 |
| 'viewDisplayString' hides a field. | 201 |
| Method 'getViewDisplayImage' is not designed for extension - needs to be abstract, final or empty. | 205 |
| Missing a Javadoc comment. | 205 |
| Method 'setViewDisplayImage' is not designed for extension - needs to be abstract, final or empty. | 209 |
| Missing a Javadoc comment. | 209 |
| Parameter viewDisplayImage should be final. | 209 |
| 'viewDisplayImage' hides a field. | 209 |
| Line is longer than 80 characters (found 118). | 214 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 15 |
| Missing a Javadoc comment. | 16 |
| Missing a Javadoc comment. | 17 |
| Missing a Javadoc comment. | 18 |
| Missing a Javadoc comment. | 19 |
| Missing a Javadoc comment. | 20 |
| Expected an @return tag. | 29 |
| Method 'validate' is not designed for extension - needs to be abstract, final or empty. | 29 |
| Parameter mapping should be final. | 29 |
| Parameter request should be final. | 29 |
| Expected @param tag for 'request'. | 29 |
| Line is longer than 80 characters (found 86). | 30 |
| 'if' construct must use '{}'s. | 31 |
| 'if' construct must use '{}'s. | 32 |
| Line is longer than 80 characters (found 85). | 37 |
| Method 'getDescription' is not designed for extension - needs to be abstract, final or empty. | 39 |
| Missing a Javadoc comment. | 39 |
| Method 'setDescription' is not designed for extension - needs to be abstract, final or empty. | 43 |
| Missing a Javadoc comment. | 43 |
| Parameter description should be final. | 43 |
| 'description' hides a field. | 43 |
| Method 'getEntries' is not designed for extension - needs to be abstract, final or empty. | 47 |
| Missing a Javadoc comment. | 47 |
| Method 'setEntries' is not designed for extension - needs to be abstract, final or empty. | 51 |
| Missing a Javadoc comment. | 51 |
| Parameter entries should be final. | 51 |
| 'entries' hides a field. | 51 |
| Method 'getRowAt' is not designed for extension - needs to be abstract, final or empty. | 55 |
| Missing a Javadoc comment. | 55 |
| Parameter index should be final. | 55 |
| Method 'getClassName' is not designed for extension - needs to be abstract, final or empty. | 59 |
| Missing a Javadoc comment. | 59 |
| Method 'setClassName' is not designed for extension - needs to be abstract, final or empty. | 63 |
| Missing a Javadoc comment. | 63 |
| Parameter className should be final. | 63 |
| 'className' hides a field. | 63 |
| Method 'getSubclassName' is not designed for extension - needs to be abstract, final or empty. | 67 |
| Missing a Javadoc comment. | 67 |
| Method 'setSubclassName' is not designed for extension - needs to be abstract, final or empty. | 71 |
| Missing a Javadoc comment. | 71 |
| Parameter subclassName should be final. | 71 |
| 'subclassName' hides a field. | 71 |
| Method 'getClassEc' is not designed for extension - needs to be abstract, final or empty. | 75 |
| Missing a Javadoc comment. | 75 |
| Method 'setClassEc' is not designed for extension - needs to be abstract, final or empty. | 79 |
| Missing a Javadoc comment. | 79 |
| Parameter classEc should be final. | 79 |
| 'classEc' hides a field. | 79 |
| Method 'getSubclassEc' is not designed for extension - needs to be abstract, final or empty. | 83 |
| Missing a Javadoc comment. | 83 |
| Method 'setSubclassEc' is not designed for extension - needs to be abstract, final or empty. | 87 |
| Missing a Javadoc comment. | 87 |
| Parameter subclassEc should be final. | 87 |
| 'subclassEc' hides a field. | 87 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 11 |
| Missing a Javadoc comment. | 12 |
| Missing a Javadoc comment. | 13 |
| Missing a Javadoc comment. | 14 |
| Line is longer than 80 characters (found 85). | 17 |
| Method 'getDescription' is not designed for extension - needs to be abstract, final or empty. | 19 |
| Missing a Javadoc comment. | 19 |
| Method 'setDescription' is not designed for extension - needs to be abstract, final or empty. | 23 |
| Missing a Javadoc comment. | 23 |
| Parameter description should be final. | 23 |
| 'description' hides a field. | 23 |
| Method 'getSubSubclasses' is not designed for extension - needs to be abstract, final or empty. | 27 |
| Missing a Javadoc comment. | 27 |
| Method 'setSubSubclasses' is not designed for extension - needs to be abstract, final or empty. | 31 |
| Missing a Javadoc comment. | 31 |
| Parameter subSubclasses should be final. | 31 |
| 'subSubclasses' hides a field. | 31 |
| Method 'getRowAt' is not designed for extension - needs to be abstract, final or empty. | 35 |
| Missing a Javadoc comment. | 35 |
| Parameter index should be final. | 35 |
| Method 'getClassEc' is not designed for extension - needs to be abstract, final or empty. | 39 |
| Missing a Javadoc comment. | 39 |
| Method 'setClassEc' is not designed for extension - needs to be abstract, final or empty. | 43 |
| Missing a Javadoc comment. | 43 |
| Parameter classEc should be final. | 43 |
| 'classEc' hides a field. | 43 |
| Method 'getClassName' is not designed for extension - needs to be abstract, final or empty. | 47 |
| Missing a Javadoc comment. | 47 |
| Method 'setClassName' is not designed for extension - needs to be abstract, final or empty. | 51 |
| Missing a Javadoc comment. | 51 |
| Parameter className should be final. | 51 |
| 'className' hides a field. | 51 |
| Violation | Message | Line |
|---|---|---|
| Unused import - org.apache.struts.action.ActionErrors. | 3 |
| Unused import - org.apache.struts.action.ActionMapping. | 4 |
| Unused import - javax.servlet.http.HttpServletRequest. | 7 |
| Missing a Javadoc comment. | 17 |
| Method 'getVersionNumber' is not designed for extension - needs to be abstract, final or empty. | 19 |
| Missing a Javadoc comment. | 19 |
| Method 'setVersionNumber' is not designed for extension - needs to be abstract, final or empty. | 23 |
| Missing a Javadoc comment. | 23 |
| Parameter versionNumber should be final. | 23 |
| 'versionNumber' hides a field. | 23 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 17 |
| Variable 'ec' must be private and have accessor methods. | 17 |
| Missing a Javadoc comment. | 18 |
| Variable 'name' must be private and have accessor methods. | 18 |
| Line has trailing spaces. | 19 |
| Line is longer than 80 characters (found 83). | 20 |
| Method 'validate' is not designed for extension - needs to be abstract, final or empty. | 20 |
| Missing a Javadoc comment. | 20 |
| Parameter mapping should be final. | 20 |
| Parameter request should be final. | 20 |
| Line is longer than 80 characters (found 86). | 21 |
| 'if' construct must use '{}'s. | 22 |
| 'if' construct must use '{}'s. | 23 |
| Line has trailing spaces. | 27 |
| Line is longer than 80 characters (found 85). | 28 |
| Method 'getEc' is not designed for extension - needs to be abstract, final or empty. | 30 |
| Missing a Javadoc comment. | 30 |
| Method 'setEc' is not designed for extension - needs to be abstract, final or empty. | 34 |
| Missing a Javadoc comment. | 34 |
| Parameter ec should be final. | 34 |
| 'ec' hides a field. | 34 |
| Method 'getName' is not designed for extension - needs to be abstract, final or empty. | 38 |
| Missing a Javadoc comment. | 38 |
| Method 'setName' is not designed for extension - needs to be abstract, final or empty. | 42 |
| Missing a Javadoc comment. | 42 |
| Parameter name should be final. | 42 |
| 'name' hides a field. | 42 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 13 |
| Variable 'enzymeId' must be private and have accessor methods. | 13 |
| Missing a Javadoc comment. | 15 |
| Variable 'source' must be private and have accessor methods. | 15 |
| Missing a Javadoc comment. | 17 |
| Variable 'status' must be private and have accessor methods. | 17 |
| Missing a Javadoc comment. | 19 |
| Variable 'eventClass' must be private and have accessor methods. | 19 |
| Missing a Javadoc comment. | 21 |
| Variable 'eventNote' must be private and have accessor methods. | 21 |
| Missing a Javadoc comment. | 23 |
| Variable 'active' must be private and have accessor methods. | 23 |
| Missing a Javadoc comment. | 25 |
| Line is longer than 80 characters (found 85). | 29 |
| Method 'getEnzymeId' is not designed for extension - needs to be abstract, final or empty. | 31 |
| Missing a Javadoc comment. | 31 |
| Method 'setEnzymeId' is not designed for extension - needs to be abstract, final or empty. | 35 |
| Missing a Javadoc comment. | 35 |
| Parameter enzymeId should be final. | 35 |
| 'enzymeId' hides a field. | 35 |
| Method 'getSource' is not designed for extension - needs to be abstract, final or empty. | 39 |
| Missing a Javadoc comment. | 39 |
| Method 'setSource' is not designed for extension - needs to be abstract, final or empty. | 43 |
| Missing a Javadoc comment. | 43 |
| Parameter source should be final. | 43 |
| 'source' hides a field. | 43 |
| Method 'getStatus' is not designed for extension - needs to be abstract, final or empty. | 47 |
| Missing a Javadoc comment. | 47 |
| Method 'setStatus' is not designed for extension - needs to be abstract, final or empty. | 51 |
| Missing a Javadoc comment. | 51 |
| Parameter status should be final. | 51 |
| 'status' hides a field. | 51 |
| Method 'getEventClass' is not designed for extension - needs to be abstract, final or empty. | 55 |
| Missing a Javadoc comment. | 55 |
| Method 'setEventClass' is not designed for extension - needs to be abstract, final or empty. | 59 |
| Missing a Javadoc comment. | 59 |
| Parameter eventClass should be final. | 59 |
| 'eventClass' hides a field. | 59 |
| Method 'getEventNote' is not designed for extension - needs to be abstract, final or empty. | 63 |
| Missing a Javadoc comment. | 63 |
| Method 'setEventNote' is not designed for extension - needs to be abstract, final or empty. | 67 |
| Missing a Javadoc comment. | 67 |
| Parameter eventNote should be final. | 67 |
| 'eventNote' hides a field. | 67 |
| Method 'getActive' is not designed for extension - needs to be abstract, final or empty. | 71 |
| Missing a Javadoc comment. | 71 |
| Method 'setActive' is not designed for extension - needs to be abstract, final or empty. | 75 |
| Missing a Javadoc comment. | 75 |
| Parameter active should be final. | 75 |
| 'active' hides a field. | 75 |
| Violation | Message | Line |
|---|---|---|
| Unused import - org.apache.struts.action.ActionErrors. | 3 |
| Unused import - org.apache.struts.action.ActionMapping. | 4 |
| Unused import - javax.servlet.http.HttpServletRequest. | 7 |
| Line is longer than 80 characters (found 93). | 11 |
| Missing a Javadoc comment. | 18 |
| Method 'getGhostEnzymeList' is not designed for extension - needs to be abstract, final or empty. | 20 |
| Missing a Javadoc comment. | 20 |
| Method 'setGhostEnzymeList' is not designed for extension - needs to be abstract, final or empty. | 24 |
| Missing a Javadoc comment. | 24 |
| Parameter ghostEnzymeList should be final. | 24 |
| 'ghostEnzymeList' hides a field. | 24 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 109). | 11 |
| Line is longer than 80 characters (found 83). | 19 |
| Line is longer than 80 characters (found 84). | 20 |
| Line is longer than 80 characters (found 95). | 30 |
| Extra HTML tag found: </code></td> | 31 |
| Line is longer than 80 characters (found 112). | 36 |
| Extra HTML tag found: </code></td> | 37 |
| Line is longer than 80 characters (found 115). | 47 |
| Extra HTML tag found: </code></td> | 48 |
| Line is longer than 80 characters (found 114). | 53 |
| Extra HTML tag found: </code></td> | 54 |
| Line is longer than 80 characters (found 119). | 59 |
| Extra HTML tag found: </code></td> | 60 |
| Line is longer than 80 characters (found 102). | 65 |
| Extra HTML tag found: </code></td> | 66 |
| Line is longer than 80 characters (found 104). | 71 |
| Line is longer than 80 characters (found 125). | 72 |
| Extra HTML tag found: </code></td> | 73 |
| Line is longer than 80 characters (found 99). | 78 |
| Missing a Javadoc comment. | 102 |
| Missing a Javadoc comment. | 103 |
| Missing a Javadoc comment. | 105 |
| Missing a Javadoc comment. | 106 |
| Missing a Javadoc comment. | 108 |
| Missing a Javadoc comment. | 109 |
| Missing a Javadoc comment. | 110 |
| Missing a Javadoc comment. | 111 |
| Missing a Javadoc comment. | 112 |
| Missing a Javadoc comment. | 113 |
| Missing a Javadoc comment. | 114 |
| Missing a Javadoc comment. | 115 |
| Missing a Javadoc comment. | 116 |
| Line is longer than 80 characters (found 83). | 118 |
| Method 'validate' is not designed for extension - needs to be abstract, final or empty. | 118 |
| Missing a Javadoc comment. | 118 |
| Parameter mapping should be final. | 118 |
| Parameter request should be final. | 118 |
| Line is longer than 80 characters (found 85). | 126 |
| Method 'getId' is not designed for extension - needs to be abstract, final or empty. | 128 |
| Missing a Javadoc comment. | 128 |
| Method 'setId' is not designed for extension - needs to be abstract, final or empty. | 132 |
| Missing a Javadoc comment. | 132 |
| Parameter id should be final. | 132 |
| 'id' hides a field. | 132 |
| Method 'getEc' is not designed for extension - needs to be abstract, final or empty. | 136 |
| Missing a Javadoc comment. | 136 |
| Method 'setEc' is not designed for extension - needs to be abstract, final or empty. | 140 |
| Missing a Javadoc comment. | 140 |
| Parameter ec should be final. | 140 |
| 'ec' hides a field. | 140 |
| Method 'getLatestHistoryEventClass' is not designed for extension - needs to be abstract, final or empty. | 144 |
| Missing a Javadoc comment. | 144 |
| Method 'setLatestHistoryEventClass' is not designed for extension - needs to be abstract, final or empty. | 148 |
| Missing a Javadoc comment. | 148 |
| Parameter latestHistoryEventClass should be final. | 148 |
| 'latestHistoryEventClass' hides a field. | 148 |
| Method 'getLatestHistoryEventNote' is not designed for extension - needs to be abstract, final or empty. | 152 |
| Missing a Javadoc comment. | 152 |
| Method 'setLatestHistoryEventNote' is not designed for extension - needs to be abstract, final or empty. | 156 |
| Missing a Javadoc comment. | 156 |
| Parameter latestHistoryEventNote should be final. | 156 |
| 'latestHistoryEventNote' hides a field. | 156 |
| Method 'getSystematicName' is not designed for extension - needs to be abstract, final or empty. | 160 |
| Missing a Javadoc comment. | 160 |
| Method 'setSystematicName' is not designed for extension - needs to be abstract, final or empty. | 164 |
| Missing a Javadoc comment. | 164 |
| Parameter systematicName should be final. | 164 |
| 'systematicName' hides a field. | 164 |
| Method 'getHistoryLine' is not designed for extension - needs to be abstract, final or empty. | 168 |
| Missing a Javadoc comment. | 168 |
| Method 'setHistoryLine' is not designed for extension - needs to be abstract, final or empty. | 172 |
| Missing a Javadoc comment. | 172 |
| Parameter historyLine should be final. | 172 |
| 'historyLine' hides a field. | 172 |
| Method 'getCommonNames' is not designed for extension - needs to be abstract, final or empty. | 176 |
| Missing a Javadoc comment. | 176 |
| Method 'setCommonNames' is not designed for extension - needs to be abstract, final or empty. | 180 |
| Missing a Javadoc comment. | 180 |
| Parameter commonNames should be final. | 180 |
| 'commonNames' hides a field. | 180 |
| Method 'getReactions' is not designed for extension - needs to be abstract, final or empty. | 184 |
| Missing a Javadoc comment. | 184 |
| Method 'setReactions' is not designed for extension - needs to be abstract, final or empty. | 188 |
| Missing a Javadoc comment. | 188 |
| Parameter reactions should be final. | 188 |
| 'reactions' hides a field. | 188 |
| Method 'getSynonyms' is not designed for extension - needs to be abstract, final or empty. | 192 |
| Missing a Javadoc comment. | 192 |
| Method 'setSynonyms' is not designed for extension - needs to be abstract, final or empty. | 196 |
| Missing a Javadoc comment. | 196 |
| Parameter synonyms should be final. | 196 |
| 'synonyms' hides a field. | 196 |
| Method 'getLinks' is not designed for extension - needs to be abstract, final or empty. | 200 |
| Missing a Javadoc comment. | 200 |
| Method 'setLinks' is not designed for extension - needs to be abstract, final or empty. | 204 |
| Missing a Javadoc comment. | 204 |
| Parameter links should be final. | 204 |
| 'links' hides a field. | 204 |
| Method 'getComments' is not designed for extension - needs to be abstract, final or empty. | 208 |
| Missing a Javadoc comment. | 208 |
| Method 'setComments' is not designed for extension - needs to be abstract, final or empty. | 212 |
| Missing a Javadoc comment. | 212 |
| Parameter comments should be final. | 212 |
| 'comments' hides a field. | 212 |
| Method 'getReferences' is not designed for extension - needs to be abstract, final or empty. | 216 |
| Missing a Javadoc comment. | 216 |
| Method 'setReferences' is not designed for extension - needs to be abstract, final or empty. | 220 |
| Missing a Javadoc comment. | 220 |
| Parameter references should be final. | 220 |
| 'references' hides a field. | 220 |
| Method 'getStatusCode' is not designed for extension - needs to be abstract, final or empty. | 224 |
| Missing a Javadoc comment. | 224 |
| Method 'setStatusCode' is not designed for extension - needs to be abstract, final or empty. | 228 |
| Missing a Javadoc comment. | 228 |
| Parameter statusCode should be final. | 228 |
| 'statusCode' hides a field. | 228 |
| Violation | Message | Line |
|---|---|---|
| Line contains a tab character. | 24 |
| Missing a Javadoc comment. | 24 |
| Missing a Javadoc comment. | 25 |
| Missing a Javadoc comment. | 26 |
| Missing a Javadoc comment. | 27 |
| Missing a Javadoc comment. | 28 |
| Missing a Javadoc comment. | 29 |
| Missing a Javadoc comment. | 30 |
| Missing a Javadoc comment. | 31 |
| Missing a Javadoc comment. | 32 |
| Missing a Javadoc comment. | 33 |
| Missing a Javadoc comment. | 34 |
| Missing a Javadoc comment. | 36 |
| Line is longer than 80 characters (found 153). | 45 |
| Missing a Javadoc comment. | 49 |
| Parameter reactionDTO should be final. | 49 |
| Method 'validate' is not designed for extension - needs to be abstract, final or empty. | 60 |
| Line is longer than 80 characters (found 83). | 61 |
| Parameter mapping should be final. | 61 |
| Parameter request should be final. | 61 |
| Line is longer than 80 characters (found 101). | 63 |
| 'if' construct must use '{}'s. | 67 |
| Line is longer than 80 characters (found 100). | 67 |
| Line is longer than 80 characters (found 112). | 68 |
| Line contains a tab character. | 68 |
| Line is longer than 80 characters (found 84). | 70 |
| Line is longer than 80 characters (found 139). | 72 |
| Line contains a tab character. | 72 |
| 'if' construct must use '{}'s. | 73 |
| Line is longer than 80 characters (found 111). | 74 |
| Line contains a tab character. | 74 |
| Avoid inline conditionals. | 75 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 78 |
| Parameter o should be final. | 79 |
| 'if' construct must use '{}'s. | 80 |
| 'if' construct must use '{}'s. | 81 |
| Line is longer than 80 characters (found 105). | 85 |
| 'if' construct must use '{}'s. | 86 |
| '?' should be on a new line. | 86 |
| Avoid inline conditionals. | 86 |
| Line is longer than 80 characters (found 88). | 87 |
| Line contains a tab character. | 87 |
| ':' should be on a new line. | 87 |
| Line contains a tab character. | 88 |
| Line contains a tab character. | 89 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 94 |
| Line is longer than 80 characters (found 90). | 97 |
| Avoid inline conditionals. | 97 |
| Line is longer than 80 characters (found 116). | 105 |
| Parameter encoding should be final. | 108 |
| Expected @param tag for 'encoding'. | 108 |
| Line is longer than 80 characters (found 83). | 109 |
| Line is longer than 80 characters (found 84). | 110 |
| Line is longer than 80 characters (found 82). | 115 |
| Line is longer than 80 characters (found 118). | 124 |
| 'if' is not followed by whitespace. | 127 |
| Line is longer than 80 characters (found 85). | 133 |
| Method 'getId' is not designed for extension - needs to be abstract, final or empty. | 135 |
| Missing a Javadoc comment. | 135 |
| Line contains a tab character. | 136 |
| Method 'setId' is not designed for extension - needs to be abstract, final or empty. | 139 |
| Missing a Javadoc comment. | 139 |
| Parameter id should be final. | 139 |
| 'id' hides a field. | 139 |
| Line contains a tab character. | 140 |
| Method 'getTextualRepresentation' is not designed for extension - needs to be abstract, final or empty. | 143 |
| Missing a Javadoc comment. | 143 |
| Method 'setTextualRepresentation' is not designed for extension - needs to be abstract, final or empty. | 147 |
| Missing a Javadoc comment. | 147 |
| Parameter textualRepresentation should be final. | 147 |
| 'textualRepresentation' hides a field. | 147 |
| Line contains a tab character. | 149 |
| Line contains a tab character. | 150 |
| Method 'getXmlTextualRepresentation' is not designed for extension - needs to be abstract, final or empty. | 153 |
| Missing a Javadoc comment. | 153 |
| Method 'setXmlTextualRepresentation' is not designed for extension - needs to be abstract, final or empty. | 157 |
| Missing a Javadoc comment. | 157 |
| Parameter xmlTextualRepresentation should be final. | 157 |
| 'xmlTextualRepresentation' hides a field. | 157 |
| Line contains a tab character. | 159 |
| Line contains a tab character. | 160 |
| Method 'getOrderIn' is not designed for extension - needs to be abstract, final or empty. | 163 |
| Missing a Javadoc comment. | 163 |
| Method 'setOrderIn' is not designed for extension - needs to be abstract, final or empty. | 167 |
| Missing a Javadoc comment. | 167 |
| Parameter orderIn should be final. | 167 |
| 'orderIn' hides a field. | 167 |
| Method 'getSource' is not designed for extension - needs to be abstract, final or empty. | 171 |
| Missing a Javadoc comment. | 171 |
| Method 'setSource' is not designed for extension - needs to be abstract, final or empty. | 175 |
| Missing a Javadoc comment. | 175 |
| Parameter source should be final. | 175 |
| 'source' hides a field. | 175 |
| Method 'getView' is not designed for extension - needs to be abstract, final or empty. | 179 |
| Missing a Javadoc comment. | 179 |
| Method 'setView' is not designed for extension - needs to be abstract, final or empty. | 183 |
| Missing a Javadoc comment. | 183 |
| Parameter view should be final. | 183 |
| 'view' hides a field. | 183 |
| Method 'getIubmb' is not designed for extension - needs to be abstract, final or empty. | 187 |
| Missing a Javadoc comment. | 187 |
| Line contains a tab character. | 188 |
| Line contains a tab character. | 191 |
| Method 'setIubmb' is not designed for extension - needs to be abstract, final or empty. | 191 |
| Missing a Javadoc comment. | 191 |
| Parameter iubmb should be final. | 191 |
| 'iubmb' hides a field. | 191 |
| Line contains a tab character. | 192 |
| Line contains a tab character. | 193 |
| Method 'getSourceDisplay' is not designed for extension - needs to be abstract, final or empty. | 195 |
| Missing a Javadoc comment. | 195 |
| Method 'setSourceDisplay' is not designed for extension - needs to be abstract, final or empty. | 199 |
| Missing a Javadoc comment. | 199 |
| Parameter sourceDisplay should be final. | 199 |
| 'sourceDisplay' hides a field. | 199 |
| Method 'getViewDisplayString' is not designed for extension - needs to be abstract, final or empty. | 203 |
| Missing a Javadoc comment. | 203 |
| Method 'setViewDisplayString' is not designed for extension - needs to be abstract, final or empty. | 207 |
| Missing a Javadoc comment. | 207 |
| Parameter viewDisplayString should be final. | 207 |
| 'viewDisplayString' hides a field. | 207 |
| Method 'getViewDisplayImage' is not designed for extension - needs to be abstract, final or empty. | 211 |
| Missing a Javadoc comment. | 211 |
| Method 'setViewDisplayImage' is not designed for extension - needs to be abstract, final or empty. | 215 |
| Missing a Javadoc comment. | 215 |
| Parameter viewDisplayImage should be final. | 215 |
| 'viewDisplayImage' hides a field. | 215 |
| Method 'getStatus' is not designed for extension - needs to be abstract, final or empty. | 219 |
| Missing a Javadoc comment. | 219 |
| Line contains a tab character. | 220 |
| Method 'setStatus' is not designed for extension - needs to be abstract, final or empty. | 223 |
| Missing a Javadoc comment. | 223 |
| Parameter status should be final. | 223 |
| 'status' hides a field. | 223 |
| Line contains a tab character. | 224 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 23 |
| Missing a Javadoc comment. | 24 |
| Missing a Javadoc comment. | 25 |
| Missing a Javadoc comment. | 26 |
| Missing a Javadoc comment. | 27 |
| Missing a Javadoc comment. | 28 |
| Missing a Javadoc comment. | 29 |
| Missing a Javadoc comment. | 30 |
| Missing a Javadoc comment. | 31 |
| Missing a Javadoc comment. | 32 |
| Missing a Javadoc comment. | 33 |
| Missing a Javadoc comment. | 34 |
| Missing a Javadoc comment. | 35 |
| Missing a Javadoc comment. | 36 |
| Missing a Javadoc comment. | 37 |
| Missing a Javadoc comment. | 38 |
| Missing a Javadoc comment. | 39 |
| Missing a Javadoc comment. | 40 |
| Missing a Javadoc comment. | 41 |
| Missing a Javadoc comment. | 42 |
| Missing a Javadoc comment. | 44 |
| Missing a Javadoc comment. | 45 |
| Missing a Javadoc comment. | 46 |
| Missing a Javadoc comment. | 47 |
| Missing a Javadoc comment. | 48 |
| Missing a Javadoc comment. | 50 |
| Line is longer than 80 characters (found 153). | 70 |
| Missing a Javadoc comment. | 78 |
| Parameter referenceDTO should be final. | 78 |
| Method 'validate' is not designed for extension - needs to be abstract, final or empty. | 106 |
| Line is longer than 80 characters (found 83). | 107 |
| Parameter mapping should be final. | 107 |
| Parameter request should be final. | 107 |
| Line is longer than 80 characters (found 101). | 110 |
| '{' is not preceded with whitespace. | 119 |
| Line is longer than 80 characters (found 88). | 120 |
| Line contains a tab character. | 120 |
| 'if' construct must use '{}'s. | 125 |
| Line contains a tab character. | 126 |
| Line is longer than 80 characters (found 117). | 127 |
| Line contains a tab character. | 127 |
| 'if' construct must use '{}'s. | 128 |
| Line is longer than 80 characters (found 97). | 129 |
| Line contains a tab character. | 129 |
| 'if' construct must use '{}'s. | 133 |
| Line contains a tab character. | 134 |
| Line is longer than 80 characters (found 115). | 135 |
| Line contains a tab character. | 135 |
| 'if' construct must use '{}'s. | 136 |
| Line is longer than 80 characters (found 95). | 137 |
| Line contains a tab character. | 137 |
| '{' is not preceded with whitespace. | 140 |
| 'if' construct must use '{}'s. | 142 |
| Line contains a tab character. | 143 |
| Line is longer than 80 characters (found 121). | 144 |
| Line contains a tab character. | 144 |
| 'if' construct must use '{}'s. | 145 |
| Line is longer than 80 characters (found 101). | 146 |
| Line contains a tab character. | 146 |
| Line is longer than 80 characters (found 82). | 149 |
| Line contains a tab character. | 149 |
| Line is longer than 80 characters (found 83). | 150 |
| Line contains a tab character. | 152 |
| Line has trailing spaces. | 153 |
| '{' is not preceded with whitespace. | 154 |
| Line is longer than 80 characters (found 86). | 155 |
| Method 'reset' is not designed for extension - needs to be abstract, final or empty. | 161 |
| Parameter mapping should be final. | 162 |
| Parameter request should be final. | 162 |
| Line is longer than 80 characters (found 94). | 191 |
| Line is longer than 80 characters (found 90). | 193 |
| Method 'isEmpty' is not designed for extension - needs to be abstract, final or empty. | 195 |
| Line is longer than 80 characters (found 104). | 196 |
| '&&' should be on a new line. | 196 |
| Line is longer than 80 characters (found 96). | 197 |
| '&&' should be on a new line. | 197 |
| Line is longer than 80 characters (found 102). | 198 |
| '&&' should be on a new line. | 198 |
| Line is longer than 80 characters (found 100). | 199 |
| '&&' should be on a new line. | 199 |
| Line is longer than 80 characters (found 104). | 200 |
| '&&' should be on a new line. | 200 |
| Line is longer than 80 characters (found 110). | 201 |
| Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 204 |
| Parameter o should be final. | 205 |
| 'if' construct must use '{}'s. | 206 |
| 'if' construct must use '{}'s. | 207 |
| 'if' construct must use '{}'s. | 211 |
| Line is longer than 80 characters (found 109). | 211 |
| Avoid inline conditionals. | 211 |
| 'if' construct must use '{}'s. | 212 |
| Line is longer than 80 characters (found 117). | 212 |
| Avoid inline conditionals. | 212 |
| 'if' construct must use '{}'s. | 213 |
| Line is longer than 80 characters (found 113). | 213 |
| Avoid inline conditionals. | 213 |
| 'if' construct must use '{}'s. | 214 |
| Line is longer than 80 characters (found 113). | 214 |
| Avoid inline conditionals. | 214 |
| 'if' construct must use '{}'s. | 215 |
| Line is longer than 80 characters (found 117). | 215 |
| Avoid inline conditionals. | 215 |
| '!=' should be on a new line. | 215 |
| Line is longer than 80 characters (found 92). | 216 |
| 'if' construct must use '{}'s. | 218 |
| Line is longer than 80 characters (found 97). | 218 |
| Avoid inline conditionals. | 218 |
| 'if' construct must use '{}'s. | 219 |
| Line is longer than 80 characters (found 105). | 219 |
| Avoid inline conditionals. | 219 |
| 'if' construct must use '{}'s. | 220 |
| Line is longer than 80 characters (found 121). | 220 |
| Avoid inline conditionals. | 220 |
| 'if' construct must use '{}'s. | 221 |
| Line is longer than 80 characters (found 117). | 221 |
| Avoid inline conditionals. | 221 |
| 'if' construct must use '{}'s. | 222 |
| Line is longer than 80 characters (found 121). | 222 |
| Avoid inline conditionals. | 222 |
| 'if' construct must use '{}'s. | 223 |
| Line is longer than 80 characters (found 129). | 223 |
| Avoid inline conditionals. | 223 |
| 'if' construct must use '{}'s. | 224 |
| Line is longer than 80 characters (found 113). | 224 |
| Avoid inline conditionals. | 224 |
| 'if' construct must use '{}'s. | 225 |
| Line is longer than 80 characters (found 97). | 225 |
| Avoid inline conditionals. | 225 |
| Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 230 |
| Avoid inline conditionals. | 233 |
| '29' is a magic number. | 234 |
| Avoid inline conditionals. | 234 |
| '29' is a magic number. | 235 |
| Avoid inline conditionals. | 235 |
| '29' is a magic number. | 236 |
| Avoid inline conditionals. | 236 |
| '29' is a magic number. | 237 |
| Avoid inline conditionals. | 237 |
| '29' is a magic number. | 238 |
| Avoid inline conditionals. | 238 |
| Line is longer than 80 characters (found 84). | 239 |
| '29' is a magic number. | 239 |
| Avoid inline conditionals. | 239 |
| '29' is a magic number. | 240 |
| Avoid inline conditionals. | 240 |
| '29' is a magic number. | 241 |
| Avoid inline conditionals. | 241 |
| '29' is a magic number. | 242 |
| Avoid inline conditionals. | 242 |
| '29' is a magic number. | 243 |
| Avoid inline conditionals. | 243 |
| '29' is a magic number. | 244 |
| Avoid inline conditionals. | 244 |
| '29' is a magic number. | 245 |
| Avoid inline conditionals. | 245 |
| Missing a Javadoc comment. | 249 |
| Parameter encoding should be final. | 249 |
| Inner assignments should be avoided. | 251 |
| Missing a Javadoc comment. | 255 |
| Parameter encoding should be final. | 255 |
| Inner assignments should be avoided. | 257 |
| Missing a Javadoc comment. | 261 |
| Parameter encoding should be final. | 261 |
| Inner assignments should be avoided. | 263 |
| Missing a Javadoc comment. | 267 |
| Parameter encoding should be final. | 267 |
| Inner assignments should be avoided. | 269 |
| Missing a Javadoc comment. | 273 |
| Parameter encoding should be final. | 273 |
| Inner assignments should be avoided. | 275 |
| Line is longer than 80 characters (found 118). | 280 |
| Line is longer than 80 characters (found 85). | 290 |
| Method 'getPubId' is not designed for extension - needs to be abstract, final or empty. | 292 |
| Missing a Javadoc comment. | 292 |
| Method 'setPubId' is not designed for extension - needs to be abstract, final or empty. | 296 |
| Missing a Javadoc comment. | 296 |
| Parameter pubId should be final. | 296 |
| 'pubId' hides a field. | 296 |
| Method 'getType' is not designed for extension - needs to be abstract, final or empty. | 300 |
| Missing a Javadoc comment. | 300 |
| Method 'setType' is not designed for extension - needs to be abstract, final or empty. | 304 |
| Missing a Javadoc comment. | 304 |
| Parameter type should be final. | 304 |
| 'type' hides a field. | 304 |
| Method 'getAuthors' is not designed for extension - needs to be abstract, final or empty. | 308 |
| Missing a Javadoc comment. | 308 |
| Method 'setAuthors' is not designed for extension - needs to be abstract, final or empty. | 312 |
| Missing a Javadoc comment. | 312 |
| Parameter authors should be final. | 312 |
| 'authors' hides a field. | 312 |
| Method 'getTitle' is not designed for extension - needs to be abstract, final or empty. | 316 |
| Missing a Javadoc comment. | 316 |
| Method 'setTitle' is not designed for extension - needs to be abstract, final or empty. | 320 |
| Missing a Javadoc comment. | 320 |
| Parameter title should be final. | 320 |
| 'title' hides a field. | 320 |
| Method 'getYear' is not designed for extension - needs to be abstract, final or empty. | 324 |
| Missing a Javadoc comment. | 324 |
| Method 'setYear' is not designed for extension - needs to be abstract, final or empty. | 328 |
| Missing a Javadoc comment. | 328 |
| Parameter year should be final. | 328 |
| 'year' hides a field. | 328 |
| Method 'getPubName' is not designed for extension - needs to be abstract, final or empty. | 332 |
| Missing a Javadoc comment. | 332 |
| Method 'setPubName' is not designed for extension - needs to be abstract, final or empty. | 336 |
| Missing a Javadoc comment. | 336 |
| Parameter pubName should be final. | 336 |
| 'pubName' hides a field. | 336 |
| Method 'getFirstPage' is not designed for extension - needs to be abstract, final or empty. | 340 |
| Missing a Javadoc comment. | 340 |
| Method 'setFirstPage' is not designed for extension - needs to be abstract, final or empty. | 344 |
| Missing a Javadoc comment. | 344 |
| Parameter firstPage should be final. | 344 |
| 'firstPage' hides a field. | 344 |
| Method 'getLastPage' is not designed for extension - needs to be abstract, final or empty. | 348 |
| Missing a Javadoc comment. | 348 |
| Method 'setLastPage' is not designed for extension - needs to be abstract, final or empty. | 352 |
| Missing a Javadoc comment. | 352 |
| Parameter lastPage should be final. | 352 |
| 'lastPage' hides a field. | 352 |
| Method 'getEdition' is not designed for extension - needs to be abstract, final or empty. | 356 |
| Missing a Javadoc comment. | 356 |
| Method 'setEdition' is not designed for extension - needs to be abstract, final or empty. | 360 |
| Missing a Javadoc comment. | 360 |
| Parameter edition should be final. | 360 |
| 'edition' hides a field. | 360 |
| Method 'getEditor' is not designed for extension - needs to be abstract, final or empty. | 364 |
| Missing a Javadoc comment. | 364 |
| Method 'setEditor' is not designed for extension - needs to be abstract, final or empty. | 368 |
| Missing a Javadoc comment. | 368 |
| Parameter editor should be final. | 368 |
| 'editor' hides a field. | 368 |
| Method 'getVolume' is not designed for extension - needs to be abstract, final or empty. | 372 |
| Missing a Javadoc comment. | 372 |
| Method 'setVolume' is not designed for extension - needs to be abstract, final or empty. | 376 |
| Missing a Javadoc comment. | 376 |
| Parameter volume should be final. | 376 |
| 'volume' hides a field. | 376 |
| Method 'getPublisher' is not designed for extension - needs to be abstract, final or empty. | 380 |
| Missing a Javadoc comment. | 380 |
| Method 'setPublisher' is not designed for extension - needs to be abstract, final or empty. | 384 |
| Missing a Javadoc comment. | 384 |
| Parameter publisher should be final. | 384 |
| 'publisher' hides a field. | 384 |
| Method 'getPublisherPlace' is not designed for extension - needs to be abstract, final or empty. | 388 |
| Missing a Javadoc comment. | 388 |
| Method 'setPublisherPlace' is not designed for extension - needs to be abstract, final or empty. | 392 |
| Missing a Javadoc comment. | 392 |
| Parameter publisherPlace should be final. | 392 |
| 'publisherPlace' hides a field. | 392 |
| Method 'getPubMedId' is not designed for extension - needs to be abstract, final or empty. | 396 |
| Missing a Javadoc comment. | 396 |
| Method 'setPubMedId' is not designed for extension - needs to be abstract, final or empty. | 400 |
| Missing a Javadoc comment. | 400 |
| Parameter pubMedId should be final. | 400 |
| 'pubMedId' hides a field. | 400 |
| Method 'getMedlineId' is not designed for extension - needs to be abstract, final or empty. | 404 |
| Missing a Javadoc comment. | 404 |
| Method 'setMedlineId' is not designed for extension - needs to be abstract, final or empty. | 408 |
| Missing a Javadoc comment. | 408 |
| Parameter medlineId should be final. | 408 |
| 'medlineId' hides a field. | 408 |
| Method 'getView' is not designed for extension - needs to be abstract, final or empty. | 412 |
| Missing a Javadoc comment. | 412 |
| Method 'setView' is not designed for extension - needs to be abstract, final or empty. | 416 |
| Missing a Javadoc comment. | 416 |
| Parameter view should be final. | 416 |
| 'view' hides a field. | 416 |
| Method 'getSource' is not designed for extension - needs to be abstract, final or empty. | 420 |
| Missing a Javadoc comment. | 420 |
| Method 'setSource' is not designed for extension - needs to be abstract, final or empty. | 424 |
| Missing a Javadoc comment. | 424 |
| Parameter source should be final. | 424 |
| 'source' hides a field. | 424 |
| Method 'getSourceDisplay' is not designed for extension - needs to be abstract, final or empty. | 428 |
| Missing a Javadoc comment. | 428 |
| Method 'setSourceDisplay' is not designed for extension - needs to be abstract, final or empty. | 432 |
| Missing a Javadoc comment. | 432 |
| Parameter sourceDisplay should be final. | 432 |
| 'sourceDisplay' hides a field. | 432 |
| Method 'getViewDisplayString' is not designed for extension - needs to be abstract, final or empty. | 436 |
| Missing a Javadoc comment. | 436 |
| Method 'setViewDisplayString' is not designed for extension - needs to be abstract, final or empty. | 440 |
| Missing a Javadoc comment. | 440 |
| Parameter viewDisplayString should be final. | 440 |
| 'viewDisplayString' hides a field. | 440 |
| Method 'getViewDisplayImage' is not designed for extension - needs to be abstract, final or empty. | 444 |
| Missing a Javadoc comment. | 444 |
| Method 'setViewDisplayImage' is not designed for extension - needs to be abstract, final or empty. | 448 |
| Missing a Javadoc comment. | 448 |
| Parameter viewDisplayImage should be final. | 448 |
| 'viewDisplayImage' hides a field. | 448 |
| Method 'getXmlAuthors' is not designed for extension - needs to be abstract, final or empty. | 452 |
| Missing a Javadoc comment. | 452 |
| Method 'setXmlAuthors' is not designed for extension - needs to be abstract, final or empty. | 456 |
| Missing a Javadoc comment. | 456 |
| Parameter xmlAuthors should be final. | 456 |
| 'xmlAuthors' hides a field. | 456 |
| Method 'getXmlTitle' is not designed for extension - needs to be abstract, final or empty. | 460 |
| Missing a Javadoc comment. | 460 |
| Method 'setXmlTitle' is not designed for extension - needs to be abstract, final or empty. | 464 |
| Missing a Javadoc comment. | 464 |
| Parameter xmlTitle should be final. | 464 |
| 'xmlTitle' hides a field. | 464 |
| Method 'getXmlPubName' is not designed for extension - needs to be abstract, final or empty. | 468 |
| Missing a Javadoc comment. | 468 |
| Method 'setXmlPubName' is not designed for extension - needs to be abstract, final or empty. | 472 |
| Missing a Javadoc comment. | 472 |
| Parameter xmlPubName should be final. | 472 |
| 'xmlPubName' hides a field. | 472 |
| Method 'getXmlEditor' is not designed for extension - needs to be abstract, final or empty. | 476 |
| Missing a Javadoc comment. | 476 |
| Method 'setXmlEditor' is not designed for extension - needs to be abstract, final or empty. | 480 |
| Missing a Javadoc comment. | 480 |
| Parameter xmlEditor should be final. | 480 |
| 'xmlEditor' hides a field. | 480 |
| Method 'getXmlPublisher' is not designed for extension - needs to be abstract, final or empty. | 484 |
| Missing a Javadoc comment. | 484 |
| Method 'setXmlPublisher' is not designed for extension - needs to be abstract, final or empty. | 488 |
| Missing a Javadoc comment. | 488 |
| Parameter xmlPublisher should be final. | 488 |
| 'xmlPublisher' hides a field. | 488 |
| Violation | Message | Line |
|---|---|---|
| Unused import - org.apache.struts.action.ActionErrors. | 3 |
| Unused import - org.apache.struts.action.ActionMapping. | 4 |
| Unused import - javax.servlet.http.HttpServletRequest. | 7 |
| Missing a Javadoc comment. | 17 |
| Method 'getQ' is not designed for extension - needs to be abstract, final or empty. | 19 |
| Missing a Javadoc comment. | 19 |
| Method 'setQ' is not designed for extension - needs to be abstract, final or empty. | 23 |
| Missing a Javadoc comment. | 23 |
| Parameter q should be final. | 23 |
| 'q' hides a field. | 23 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 109). | 6 |
| Line is longer than 80 characters (found 83). | 14 |
| Line is longer than 80 characters (found 84). | 15 |
| Line is longer than 80 characters (found 95). | 25 |
| Extra HTML tag found: </code></td> | 26 |
| Line is longer than 80 characters (found 112). | 31 |
| Extra HTML tag found: </code></td> | 32 |
| Line is longer than 80 characters (found 115). | 42 |
| Extra HTML tag found: </code></td> | 43 |
| Line is longer than 80 characters (found 108). | 48 |
| Extra HTML tag found: </code></td> | 49 |
| Line is longer than 80 characters (found 119). | 54 |
| Extra HTML tag found: </code></td> | 55 |
| Line is longer than 80 characters (found 102). | 60 |
| Extra HTML tag found: </code></td> | 61 |
| Line is longer than 80 characters (found 104). | 66 |
| Line is longer than 80 characters (found 125). | 67 |
| Extra HTML tag found: </code></td> | 68 |
| Line is longer than 80 characters (found 99). | 73 |
| Missing a Javadoc comment. | 97 |
| Missing a Javadoc comment. | 98 |
| Missing a Javadoc comment. | 99 |
| Missing a Javadoc comment. | 100 |
| Line has trailing spaces. | 102 |
| Line is longer than 80 characters (found 85). | 103 |
| Method 'getId' is not designed for extension - needs to be abstract, final or empty. | 105 |
| Missing a Javadoc comment. | 105 |
| Method 'setId' is not designed for extension - needs to be abstract, final or empty. | 109 |
| Missing a Javadoc comment. | 109 |
| Parameter id should be final. | 109 |
| 'id' hides a field. | 109 |
| Method 'getEc' is not designed for extension - needs to be abstract, final or empty. | 113 |
| Missing a Javadoc comment. | 113 |
| Method 'setEc' is not designed for extension - needs to be abstract, final or empty. | 117 |
| Missing a Javadoc comment. | 117 |
| Parameter ec should be final. | 117 |
| 'ec' hides a field. | 117 |
| Method 'getEntry' is not designed for extension - needs to be abstract, final or empty. | 121 |
| Missing a Javadoc comment. | 121 |
| Method 'setEntry' is not designed for extension - needs to be abstract, final or empty. | 125 |
| Missing a Javadoc comment. | 125 |
| Parameter entry should be final. | 125 |
| 'entry' hides a field. | 125 |
| Method 'getStatusCode' is not designed for extension - needs to be abstract, final or empty. | 129 |
| Missing a Javadoc comment. | 129 |
| Method 'setStatusCode' is not designed for extension - needs to be abstract, final or empty. | 133 |
| Missing a Javadoc comment. | 133 |
| Parameter statusCode should be final. | 133 |
| 'statusCode' hides a field. | 133 |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| Missing a Javadoc comment. | 3 |
| Line contains a tab character. | 5 |
| Missing a Javadoc comment. | 5 |
| Parameter message should be final. | 5 |
| Line contains a tab character. | 6 |
| Line contains a tab character. | 7 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 92). | 6 |
| Missing a Javadoc comment. | 13 |
| Line contains a tab character. | 14 |
| Missing a Javadoc comment. | 17 |
| Parameter message should be final. | 17 |
| Missing a Javadoc comment. | 21 |
| Parameter property should be final. | 21 |
| Parameter messageKey should be final. | 21 |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| Line contains a tab character. | 21 |
| Utility classes should not have a public or default constructor. | 23 |
| Line is longer than 80 characters (found 83). | 25 |
| Line has trailing spaces. | 26 |
| Line contains a tab character. | 26 |
| Missing a Javadoc comment. | 27 |
| Parameter links should be final. | 27 |
| Expected an @return tag. | 37 |
| Parameter links should be final. | 37 |
| Expected @param tag for 'links'. | 37 |
| Parameter ec should be final. | 37 |
| Expected @param tag for 'ec'. | 37 |
| '{' is not preceded with whitespace. | 37 |
| Line contains a tab character. | 38 |
| 'if' construct must use '{}'s. | 39 |
| Line contains a tab character. | 39 |
| Line contains a tab character. | 40 |
| 'else' construct must use '{}'s. | 41 |
| Line contains a tab character. | 41 |
| Line contains a tab character. | 42 |
| Line contains a tab character. | 43 |
| Missing a Javadoc comment. | 46 |
| Parameter links should be final. | 46 |
| Parameter displayViewImgs should be final. | 46 |
| '{' is not preceded with whitespace. | 46 |
| 'if' construct must use '{}'s. | 52 |
| Line is longer than 80 characters (found 91). | 52 |
| Line contains a tab character. | 53 |
| Line is longer than 80 characters (found 112). | 54 |
| Missing a Javadoc comment. | 63 |
| Parameter link should be final. | 63 |
| Parameter ec should be final. | 63 |
| Line contains a tab character. | 64 |
| Line contains a tab character. | 65 |
| Line contains a tab character. | 66 |
| Line contains a tab character. | 67 |
| '?' is not preceded with whitespace. | 67 |
| Avoid inline conditionals. | 67 |
| Line contains a tab character. | 68 |
| '?' is not preceded with whitespace. | 68 |
| Avoid inline conditionals. | 68 |
| Line contains a tab character. | 69 |
| Line contains a tab character. | 70 |
| Line contains a tab character. | 71 |
| Line contains a tab character. | 72 |
| Parameter links should be final. | 80 |
| Expected @param tag for 'links'. | 80 |
| Parameter ec should be final. | 80 |
| Expected @param tag for 'ec'. | 80 |
| '{' is not preceded with whitespace. | 80 |
| Line contains a tab character. | 81 |
| Line contains a tab character. | 82 |
| Line contains a tab character. | 83 |
| Line contains a tab character. | 84 |
| First sentence should end with a period. | 87 |
| Parameter links should be final. | 92 |
| Expected @param tag for 'links'. | 92 |
| Parameter ec should be final. | 92 |
| Expected @param tag for 'ec'. | 92 |
| '{' is not preceded with whitespace. | 92 |
| Line contains a tab character. | 93 |
| Line contains a tab character. | 94 |
| Line contains a tab character. | 95 |
| Missing a Javadoc comment. | 98 |
| Parameter links should be final. | 98 |
| Parameter ec should be final. | 98 |
| '{' is not preceded with whitespace. | 98 |
| Line contains a tab character. | 99 |
| Line contains a tab character. | 100 |
| Line contains a tab character. | 101 |
| Missing a Javadoc comment. | 104 |
| Parameter links should be final. | 104 |
| Line is longer than 80 characters (found 86). | 111 |
| 'if' construct must use '{}'s. | 112 |
| 'if' construct must use '{}'s. | 115 |
| Line is longer than 80 characters (found 87). | 120 |
| Line is longer than 80 characters (found 96). | 121 |
| Line contains a tab character. | 121 |
| '{' is not preceded with whitespace. | 121 |
| Line contains a tab character. | 122 |
| Line is longer than 80 characters (found 96). | 123 |
| '{' is not preceded with whitespace. | 123 |
| Line is longer than 80 characters (found 97). | 124 |
| Line contains a tab character. | 124 |
| Line is longer than 80 characters (found 84). | 128 |
| '{' is not preceded with whitespace. | 128 |
| Line contains a tab character. | 129 |
| Line is longer than 80 characters (found 96). | 130 |
| '{' is not preceded with whitespace. | 130 |
| Line contains a tab character. | 131 |
| Line contains a tab character. | 133 |
| '{' is not preceded with whitespace. | 137 |
| 'if' construct must use '{}'s. | 139 |
| '{' is not preceded with whitespace. | 141 |
| 'if' construct must use '{}'s. | 143 |
| '{' is not preceded with whitespace. | 146 |
| Line is longer than 80 characters (found 82). | 154 |
| Missing a Javadoc comment. | 154 |
| Parameter links should be final. | 154 |
| Parameter displayViewImages should be final. | 154 |
| 'if' construct must use '{}'s. | 156 |
| Line is longer than 80 characters (found 107). | 156 |
| Line is longer than 80 characters (found 97). | 162 |
| '9' is a magic number. | 163 |
| Line is longer than 80 characters (found 99). | 164 |
| Line is longer than 80 characters (found 161). | 165 |
| Line is longer than 80 characters (found 91). | 170 |
| '9' is a magic number. | 171 |
| 'if' construct must use '{}'s. | 180 |
| 'if' construct must use '{}'s. | 205 |
| '9' is a magic number. | 205 |
| Line is longer than 80 characters (found 84). | 210 |
| 'if' construct must use '{}'s. | 211 |
| Line is longer than 80 characters (found 156). | 212 |
| 'else' construct must use '{}'s. | 213 |
| Line is longer than 80 characters (found 98). | 214 |
| Missing a Javadoc comment. | 221 |
| Parameter link should be final. | 221 |
| Parameter index should be final. | 221 |
| Line is longer than 80 characters (found 84). | 226 |
| '||' should be on a new line. | 226 |
| Line is longer than 80 characters (found 84). | 227 |
| Line is longer than 80 characters (found 84). | 228 |
| '||' should be on a new line. | 228 |
| Line is longer than 80 characters (found 86). | 229 |
| '||' should be on a new line. | 229 |
| Line is longer than 80 characters (found 85). | 230 |
| '||' should be on a new line. | 230 |
| Line is longer than 80 characters (found 83). | 231 |
| Line is longer than 80 characters (found 83). | 233 |
| Line is longer than 80 characters (found 88). | 239 |
| '||' should be on a new line. | 239 |
| Line is longer than 80 characters (found 87). | 240 |
| '||' should be on a new line. | 240 |
| Line is longer than 80 characters (found 83). | 241 |
| Line is longer than 80 characters (found 85). | 242 |
| Line is longer than 80 characters (found 91). | 246 |
| Line contains a tab character. | 246 |
| Line is longer than 80 characters (found 88). | 249 |
| Line is longer than 80 characters (found 85). | 250 |
| Line is longer than 80 characters (found 89). | 256 |
| Line is longer than 80 characters (found 85). | 257 |
| Line is longer than 80 characters (found 85). | 263 |
| Line is longer than 80 characters (found 85). | 264 |
| Line is longer than 80 characters (found 81). | 267 |
| Line is longer than 80 characters (found 89). | 270 |
| Line is longer than 80 characters (found 85). | 271 |
| Line is longer than 80 characters (found 81). | 274 |
| Line is longer than 80 characters (found 87). | 277 |
| Line is longer than 80 characters (found 86). | 278 |
| Line is longer than 80 characters (found 100). | 290 |
| Method length is 178 lines (max allowed is 150). | 290 |
| Missing a Javadoc comment. | 290 |
| Parameter iii should be final. | 290 |
| Parameter databaseName should be final. | 290 |
| Parameter disabled should be final. | 290 |
| 'if' construct must use '{}'s. | 292 |
| Line is longer than 80 characters (found 123). | 293 |
| 'else' construct must use '{}'s. | 294 |
| Line is longer than 80 characters (found 101). | 295 |
| Line is longer than 80 characters (found 81). | 302 |
| 'if' construct must use '{}'s. | 319 |
| 'else' construct must use '{}'s. | 321 |
| Line has trailing spaces. | 338 |
| Line is longer than 80 characters (found 83). | 340 |
| Line contains a tab character. | 340 |
| Line contains a tab character. | 341 |
| Line contains a tab character. | 342 |
| Line contains a tab character. | 343 |
| Line contains a tab character. | 344 |
| Line contains a tab character. | 345 |
| Line contains a tab character. | 346 |
| 'if' construct must use '{}'s. | 359 |
| 'else' construct must use '{}'s. | 361 |
| 'if' construct must use '{}'s. | 393 |
| 'else' construct must use '{}'s. | 395 |
| 'if' construct must use '{}'s. | 403 |
| 'else' construct must use '{}'s. | 405 |
| 'if' construct must use '{}'s. | 413 |
| 'else' construct must use '{}'s. | 415 |
| 'if' construct must use '{}'s. | 423 |
| 'else' construct must use '{}'s. | 425 |
| 'if' construct must use '{}'s. | 433 |
| 'else' construct must use '{}'s. | 435 |
| 'if' construct must use '{}'s. | 443 |
| 'else' construct must use '{}'s. | 445 |
| Line is longer than 80 characters (found 83). | 469 |
| Missing a Javadoc comment. | 469 |
| Parameter iii should be final. | 469 |
| Parameter url should be final. | 469 |
| Parameter disabled should be final. | 469 |
| 'if' construct must use '{}'s. | 472 |
| Line is longer than 80 characters (found 124). | 473 |
| 'else' construct must use '{}'s. | 474 |
| Line is longer than 80 characters (found 102). | 475 |
| Line is longer than 80 characters (found 95). | 484 |
| Missing a Javadoc comment. | 484 |
| Parameter iii should be final. | 484 |
| Parameter accession should be final. | 484 |
| Parameter disabled should be final. | 484 |
| 'if' construct must use '{}'s. | 487 |
| Line is longer than 80 characters (found 130). | 488 |
| 'else' construct must use '{}'s. | 489 |
| Line is longer than 80 characters (found 108). | 490 |
| Line is longer than 80 characters (found 85). | 499 |
| Missing a Javadoc comment. | 499 |
| Parameter iii should be final. | 499 |
| Parameter name should be final. | 499 |
| Parameter disabled should be final. | 499 |
| 'if' construct must use '{}'s. | 502 |
| Line is longer than 80 characters (found 125). | 503 |
| 'else' construct must use '{}'s. | 504 |
| Line is longer than 80 characters (found 103). | 505 |
| Line is longer than 80 characters (found 88). | 514 |
| Missing a Javadoc comment. | 514 |
| Parameter link should be final. | 514 |
| Parameter isNotFirstLink should be final. | 514 |
| '{' is not preceded with whitespace. | 514 |
| Line contains a tab character. | 516 |
| Line contains a tab character. | 517 |
| Line contains a tab character. | 518 |
| Line contains a tab character. | 519 |
| Line is longer than 80 characters (found 111). | 522 |
| Missing a Javadoc comment. | 522 |
| Parameter link should be final. | 522 |
| Parameter isNotFirstLink should be final. | 522 |
| Parameter showViewImgs should be final. | 522 |
| Line is longer than 80 characters (found 81). | 527 |
| Line is longer than 80 characters (found 91). | 538 |
| '||' should be on a new line. | 538 |
| Line is longer than 80 characters (found 89). | 539 |
| '||' should be on a new line. | 539 |
| Line is longer than 80 characters (found 92). | 540 |
| '||' should be on a new line. | 540 |
| Line is longer than 80 characters (found 90). | 541 |
| '||' should be on a new line. | 541 |
| Line is longer than 80 characters (found 91). | 542 |
| '||' should be on a new line. | 542 |
| Line is longer than 80 characters (found 92). | 543 |
| Line is longer than 80 characters (found 86). | 544 |
| Line is longer than 80 characters (found 83). | 549 |
| '{' is not preceded with whitespace. | 549 |
| Line is longer than 80 characters (found 86). | 560 |
| Line is longer than 80 characters (found 86). | 566 |
| '{' is not preceded with whitespace. | 571 |
| '{' is not preceded with whitespace. | 582 |
| Missing a Javadoc comment. | 593 |
| Parameter links should be final. | 593 |
| 'if' construct must use '{}'s. | 597 |
| Line is longer than 80 characters (found 99). | 597 |
| Violation | Message | Line |
|---|---|---|
| Utility classes should not have a public or default constructor. | 19 |
| Missing a Javadoc comment. | 21 |
| Line contains a tab character. | 22 |
| Missing a Javadoc comment. | 23 |
| Name 'ENZYME_NAME_CASING_COMPARATOR' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 23 |
| Missing a Javadoc comment. | 26 |
| Name 'STRING_REVERSE_CASING_COMPARATOR' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 26 |
| Missing a Javadoc comment. | 29 |
| '(' is preceded with whitespace. | 29 |
| Parameter commonNames should be final. | 29 |
| '(' is followed by whitespace. | 30 |
| ')' is preceded with whitespace. | 30 |
| 'if' construct must use '{}'s. | 32 |
| Line is longer than 80 characters (found 100). | 32 |
| '(' is followed by whitespace. | 32 |
| ')' is preceded with whitespace. | 32 |
| Line has trailing spaces. | 36 |
| Missing a Javadoc comment. | 37 |
| '{' is not preceded with whitespace. | 37 |
| Missing a Javadoc comment. | 41 |
| '{' is not preceded with whitespace. | 41 |
| Line has trailing spaces. | 51 |
| Line has trailing spaces. | 66 |
| Line is longer than 80 characters (found 83). | 66 |
| Line is longer than 80 characters (found 82). | 67 |
| '(' is preceded with whitespace. | 70 |
| Parameter o should be final. | 70 |
| Expected @param tag for 'o'. | 70 |
| Parameter o1 should be final. | 70 |
| Expected @param tag for 'o1'. | 70 |
| Line is longer than 80 characters (found 103). | 74 |
| Violation | Message | Line |
|---|---|---|
| Class EnzymeReactionHelper should be declared as final. | 14 |
| Line is longer than 80 characters (found 83). | 16 |
| Missing a Javadoc comment. | 18 |
| '{' is not followed by whitespace. | 18 |
| '}' is not preceded with whitespace. | 18 |
| Expected an @return tag. | 27 |
| Line is longer than 80 characters (found 126). | 27 |
| Parameter reaction should be final. | 27 |
| Expected @param tag for 'reaction'. | 27 |
| Parameter encoding should be final. | 27 |
| Expected @param tag for 'encoding'. | 27 |
| Parameter encodingType should be final. | 27 |
| Expected @param tag for 'encodingType'. | 27 |
| Line is longer than 80 characters (found 120). | 28 |
| Violation | Message | Line |
|---|---|---|
| Missing a Javadoc comment. | 3 |
| Utility classes should not have a public or default constructor. | 3 |
| Line contains a tab character. | 5 |
| Missing a Javadoc comment. | 5 |
| Parameter s should be final. | 5 |
| '{' is not preceded with whitespace. | 5 |
| Line contains a tab character. | 6 |
| Line is longer than 80 characters (found 92). | 7 |
| Line contains a tab character. | 7 |
| Line contains a tab character. | 8 |
| Violation | Message | Line |
|---|---|---|
| Unused import - org.apache.log4j.Logger. | 3 |
| Unused import - uk.ac.ebi.intenz.domain.reference.Book. | 5 |
| Unused import - uk.ac.ebi.intenz.domain.reference.Journal. | 6 |
| Unused import - uk.ac.ebi.intenz.domain.reference.Patent. | 7 |
| Unused import - uk.ac.ebi.intenz.domain.reference.Reference. | 8 |
| Utility classes should not have a public or default constructor. | 19 |
| Line is longer than 80 characters (found 81). | 21 |
| Missing a Javadoc comment. | 23 |
| Parameter references should be final. | 23 |
| 'if' construct must use '{}'s. | 28 |
| Line is longer than 80 characters (found 97). | 28 |
| '+' is not preceded with whitespace. | 28 |
| '+' is not followed by whitespace. | 28 |
| 'if' construct must use '{}'s. | 29 |
| Line is longer than 80 characters (found 94). | 29 |
| '+' is not preceded with whitespace. | 29 |
| '+' is not followed by whitespace. | 29 |
| 'if' construct must use '{}'s. | 30 |
| Line is longer than 80 characters (found 96). | 30 |
| '+' is not preceded with whitespace. | 30 |
| '+' is not followed by whitespace. | 30 |
| Line is longer than 80 characters (found 83). | 36 |
| Missing a Javadoc comment. | 36 |
| Parameter journal should be final. | 36 |
| Parameter orderIn should be final. | 36 |
| Line is longer than 80 characters (found 135). | 71 |
| Missing a Javadoc comment. | 82 |
| Parameter book should be final. | 82 |
| Parameter orderIn should be final. | 82 |
| 'if' construct must use '{}'s. | 120 |
| Line is longer than 80 characters (found 81). | 145 |
| Missing a Javadoc comment. | 145 |
| Parameter patent should be final. | 145 |
| Parameter orderIn should be final. | 145 |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| First sentence should end with a period. | 7 |
| Missing a Javadoc comment. | 15 |
| Missing a Javadoc comment. | 16 |
| Variable 'logger' must be private and have accessor methods. | 16 |
| Missing a Javadoc comment. | 18 |
| Parameter clazz should be final. | 18 |
| 'clazz' hides a field. | 18 |
| Method 'get' is not designed for extension - needs to be abstract, final or empty. | 23 |
| Missing a Javadoc comment. | 23 |
| Parameter index should be final. | 23 |
| 'if' construct must use '{}'s. | 25 |
| Line is longer than 80 characters (found 82). | 43 |
| Line is longer than 80 characters (found 86). | 45 |
| Method 'set' is not designed for extension - needs to be abstract, final or empty. | 55 |
| Missing a Javadoc comment. | 55 |
| Parameter index should be final. | 55 |
| Parameter obj should be final. | 55 |
| 'if' construct must use '{}'s. | 56 |
| Line is longer than 80 characters (found 84). | 67 |
| Violation | Message | Line |
|---|---|---|
| Line is longer than 80 characters (found 113). | 14 |
| Line is longer than 80 characters (found 116). | 17 |
| Line is longer than 80 characters (found 111). | 18 |
| Line is longer than 80 characters (found 118). | 19 |
| Line is longer than 80 characters (found 117). | 20 |
| Utility classes should not have a public or default constructor. | 26 |
| Missing a Javadoc comment. | 28 |
| Line contains a tab character. | 29 |
| Line is longer than 80 characters (found 81). | 34 |
| Parameter req should be final. | 38 |
| Parameter enzymeId should be final. | 38 |
| Expected @param tag for 'enzymeId'. | 38 |
| Line is longer than 80 characters (found 82). | 66 |
| Parameter req should be final. | 71 |
| 'if' construct must use '{}'s. | 77 |
| 'else' construct must use '{}'s. | 79 |
| Expected an @return tag. | 86 |
| Parameter digest should be final. | 86 |
| Expected @param tag for 'digest'. | 86 |
| '0x00ff' is a magic number. | 89 |
| Violation | Message | Line |
|---|---|---|
| File does not end with a newline. | 0 |
| Line is longer than 80 characters (found 100). | 7 |
| Line is longer than 80 characters (found 108). | 10 |
| Missing a Javadoc comment. | 17 |
| Missing a Javadoc comment. | 18 |
| Parameter els should be final. | 25 |
| 'els' hides a field. | 25 |
| Method 'valueBound' is not designed for extension - needs to be abstract, final or empty. | 35 |
| Parameter event should be final. | 35 |
| Method 'valueUnbound' is not designed for extension - needs to be abstract, final or empty. | 44 |
| Parameter event should be final. | 44 |
| Violation | Message | Line |
|---|---|---|
| File does not end with a newline. | 0 |
| Line is longer than 80 characters (found 94). | 11 |
| Line is longer than 80 characters (found 94). | 13 |
| Missing a Javadoc comment. | 21 |
| Name 'LOGGER' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 21 |
| Line is longer than 80 characters (found 92). | 24 |
| Name 'instance' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'. | 26 |
| Missing a Javadoc comment. | 28 |
| Line is longer than 80 characters (found 84). | 31 |
| Line is longer than 80 characters (found 105). | 49 |
| Method 'setLock' is not designed for extension - needs to be abstract, final or empty. | 56 |
| Parameter enzymeId should be final. | 56 |
| Parameter user should be final. | 56 |
| Conditional logic can be removed. | 58 |
| 'else' construct must use '{}'s. | 63 |
| Line is longer than 80 characters (found 86). | 66 |
| Method 'releaseLock' is not designed for extension - needs to be abstract, final or empty. | 75 |
| Parameter enzymeId should be final. | 75 |
| Line is longer than 80 characters (found 98). | 83 |
| Method 'invalidateLocks' is not designed for extension - needs to be abstract, final or empty. | 88 |
| Parameter user should be final. | 88 |
| Violation | Message | Line |
|---|---|---|
| Using the '.*' form of import should be avoided - org.apache.struts.action.*. | 4 |
| Missing a Javadoc comment. | 26 |
| Line contains a tab character. | 27 |
| Line is longer than 80 characters (found 112). | 29 |
| Method 'execute' is not designed for extension - needs to be abstract, final or empty. | 29 |
| Missing a Javadoc comment. | 29 |
| Parameter ex should be final. | 29 |
| Parameter ae should be final. | 29 |
| Parameter mapping should be final. | 29 |
| Parameter formInstance should be final. | 29 |
| Line is longer than 80 characters (found 114). | 30 |
| Parameter request should be final. | 30 |
| Parameter response should be final. | 30 |
| 'if' construct must use '{}'s. | 33 |
| 'if' construct must use '{}'s. | 34 |
| 'if' construct must use '{}'s. | 35 |
| Line is longer than 80 characters (found 84). | 35 |
| 'if' construct must use '{}'s. | 36 |
| Line is longer than 80 characters (found 82). | 36 |
| 'if' construct must use '{}'s. | 37 |
| 'if' construct must use '{}'s. | 38 |
| '+' is not preceded with whitespace. | 41 |
| '+' is not followed by whitespace. | 41 |
| 'if' is not followed by whitespace. | 69 |
| Violation | Message | Line |
|---|---|---|
| Utility classes should not have a public or default constructor. | 12 |
| Line is longer than 80 characters (found 92). | 15 |
| Unused @throws tag for 'NullPointerException'. | 19 |
| Parameter text should be final. | 21 |
| 'if' construct must use '{}'s. | 22 |
| Line is longer than 80 characters (found 91). | 22 |
| 'if' construct must use '{}'s. | 23 |
| Line has trailing spaces. | 23 |
| Line is longer than 80 characters (found 121). | 24 |
| Line is longer than 80 characters (found 120). | 33 |
| Line is longer than 80 characters (found 114). | 36 |
| Line is longer than 80 characters (found 127). | 37 |
| Line is longer than 80 characters (found 83). | 44 |
| Parameter string2Check should be final. | 44 |
| Parameter linkUnmarkedECs should be final. | 44 |
| Expected @param tag for 'linkUnmarkedECs'. | 44 |
| 'if' construct must use '{}'s. | 45 |
| Line is longer than 80 characters (found 108). | 45 |
| 'if' is not followed by whitespace. | 45 |
| '(' is followed by whitespace. | 45 |
| Line is longer than 80 characters (found 121). | 47 |
| 'if' construct must use '{}'s. | 52 |
| Line is longer than 80 characters (found 87). | 52 |
| 'if' construct must use '{}'s. | 53 |
| 'else' construct must use '{}'s. | 55 |
| Line is longer than 80 characters (found 151). | 56 |
| '+' is not preceded with whitespace. | 56 |
| '+' is not followed by whitespace. | 56 |
| '7' is a magic number. | 56 |
| '+' is not preceded with whitespace. | 56 |
| '+' is not followed by whitespace. | 56 |
| '10' is a magic number. | 56 |
| '10' is a magic number. | 56 |
| 'if' construct must use '{}'s. | 60 |
| 'if' is not followed by whitespace. | 60 |
| Parameter text should be final. | 71 |
| Violation | Message | Line |
|---|---|---|
| Utility classes should not have a public or default constructor. | 44 |
| Line contains a tab character. | 48 |
| Missing a Javadoc comment. | 48 |
| Parameter bean should be final. | 48 |
| Parameter field should be final. | 48 |
| Line contains a tab character. | 49 |
| Line contains a tab character. | 50 |
| Line contains a tab character. | 51 |
| Line contains a tab character. | 52 |
| Line is longer than 80 characters (found 91). | 53 |
| Line contains a tab character. | 53 |
| Line contains a tab character. | 54 |
| Line contains a tab character. | 55 |
| Line contains a tab character. | 56 |
| First sentence should end with a period. | 58 |
| Expected an @return tag. | 61 |
| Parameter bean should be final. | 61 |
| Expected @param tag for 'bean'. | 61 |
| Parameter validatorAction should be final. | 62 |
| Expected @param tag for 'validatorAction'. | 62 |
| Parameter field should be final. | 63 |
| Expected @param tag for 'field'. | 63 |
| Parameter actionMessages should be final. | 64 |
| Expected @param tag for 'actionMessages'. | 64 |
| Parameter httpServletRequest should be final. | 65 |
| Expected @param tag for 'httpServletRequest'. | 65 |
| Line is longer than 80 characters (found 92). | 68 |
| Missing a Javadoc comment. | 76 |
| Parameter bean should be final. | 76 |
| Parameter validatorAction should be final. | 77 |
| Parameter field should be final. | 78 |
| Parameter actionMessages should be final. | 79 |
| Parameter httpServletRequest should be final. | 80 |
| '{' is not preceded with whitespace. | 80 |
| Line contains a tab character. | 81 |
| Line is longer than 80 characters (found 89). | 82 |
| Line contains a tab character. | 82 |
| First sentence should end with a period. | 85 |
| Expected an @return tag. | 88 |
| Parameter CASLink should be final. | 88 |
| Expected @param tag for 'CASLink'. | 88 |
| Name 'CASLink' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 88 |
| 'if' construct must use '{}'s. | 89 |
| Line is longer than 80 characters (found 97). | 89 |
| Missing a Javadoc comment. | 94 |
| Parameter bean should be final. | 94 |
| Parameter validatorAction should be final. | 95 |
| Parameter field should be final. | 96 |
| Parameter actionMessages should be final. | 97 |
| Parameter httpServletRequest should be final. | 98 |
| '{' is not preceded with whitespace. | 100 |
| '{' is not preceded with whitespace. | 105 |
| 'if' construct must use '{}'s. | 107 |
| Line is longer than 80 characters (found 81). | 118 |
| Line is longer than 80 characters (found 119). | 132 |
| Line is longer than 80 characters (found 89). | 137 |
| Parameter enzymeDTO should be final. | 137 |
| Parameter errors should be final. | 137 |
| 'if' construct must use '{}'s. | 138 |
| Line is longer than 80 characters (found 101). | 138 |
| 'if' construct must use '{}'s. | 139 |
| Line is longer than 80 characters (found 95). | 139 |
| Missing a Javadoc comment. | 149 |
| Parameter o should be final. | 149 |
| Avoid inline conditionals. | 150 |
| Line is longer than 80 characters (found 84). | 153 |
| Line is longer than 80 characters (found 84). | 163 |
| Parameter commonNames should be final. | 163 |
| Parameter errors should be final. | 163 |
| '&&' should be on a new line. | 172 |
| Line is longer than 80 characters (found 86). | 173 |
| '||' should be on a new line. | 173 |
| Line is longer than 80 characters (found 93). | 174 |
| Line is longer than 80 characters (found 91). | 176 |
| 'else' construct must use '{}'s. | 178 |
| Missing a Javadoc comment. | 184 |
| Parameter names should be final. | 184 |
| Line is longer than 80 characters (found 88). | 188 |
| Missing a Javadoc comment. | 195 |
| Parameter list should be final. | 195 |
| Line is longer than 80 characters (found 97). | 200 |
| Parameter synonyms should be final. | 205 |
| Parameter errors should be final. | 205 |
| Line is longer than 80 characters (found 102). | 215 |
| Parameter reactions should be final. | 220 |
| Parameter errors should be final. | 220 |
| Line is longer than 80 characters (found 84). | 226 |
| Missing a Javadoc comment. | 231 |
| Parameter reactions should be final. | 231 |
| Line is longer than 80 characters (found 118). | 234 |
| Line is longer than 80 characters (found 98). | 242 |
| Parameter cofactors should be final. | 248 |
| Parameter errors should be final. | 248 |
| Missing a Javadoc comment. | 255 |
| Parameter cofactors should be final. | 255 |
| Line is longer than 80 characters (found 102). | 258 |
| Line is longer than 80 characters (found 97). | 266 |
| Parameter comments should be final. | 271 |
| Parameter errors should be final. | 271 |
| Missing a Javadoc comment. | 279 |
| Parameter comments should be final. | 279 |
| Line is longer than 80 characters (found 88). | 282 |
| Missing a Javadoc comment. | 289 |
| Parameter list should be final. | 289 |
| Parameter errors should be final. | 289 |
| Line is longer than 80 characters (found 102). | 293 |
| Line is longer than 80 characters (found 83). | 315 |
| Parameter links should be final. | 315 |
| Parameter ec should be final. | 315 |
| Expected @param tag for 'ec'. | 315 |
| Parameter errors should be final. | 315 |
| Line is longer than 80 characters (found 84). | 324 |
| Line is longer than 80 characters (found 94). | 329 |
| Line is longer than 80 characters (found 91). | 330 |
| Line is longer than 80 characters (found 88). | 332 |
| Line is longer than 80 characters (found 97). | 336 |
| Line is longer than 80 characters (found 89). | 342 |
| Line is longer than 80 characters (found 94). | 346 |
| Line is longer than 80 characters (found 94). | 347 |
| '||' should be on a new line. | 347 |
| Line is longer than 80 characters (found 84). | 348 |
| Line is longer than 80 characters (found 86). | 349 |
| Line is longer than 80 characters (found 98). | 353 |
| Line is longer than 80 characters (found 94). | 354 |
| Line is longer than 80 characters (found 92). | 355 |
| Line is longer than 80 characters (found 98). | 359 |
| Line is longer than 80 characters (found 84). | 360 |
| Line is longer than 80 characters (found 91). | 361 |
| Comment matches to-do format 'TODO:'. | 366 |
| Line is longer than 80 characters (found 103). | 367 |
| '8080' is a magic number. | 367 |
| Line is longer than 80 characters (found 87). | 368 |
| '{' is not preceded with whitespace. | 369 |
| Line is longer than 80 characters (found 94). | 370 |
| Line has trailing spaces. | 371 |
| Line contains a tab character. | 371 |
| Line is longer than 80 characters (found 90). | 374 |
| Parameter links should be final. | 388 |
| Line is longer than 80 characters (found 96). | 392 |
| Parameter links should be final. | 404 |
| Line is longer than 80 characters (found 103). | 411 |
| Line is longer than 80 characters (found 93). | 412 |
| 'if' construct must use '{}'s. | 417 |
| Line is longer than 80 characters (found 87). | 427 |
| Missing a Javadoc comment. | 427 |
| Parameter links should be final. | 427 |
| Parameter ec should be final. | 427 |
| Line is longer than 80 characters (found 118). | 431 |
| Line is longer than 80 characters (found 93). | 433 |
| Missing a Javadoc comment. | 440 |
| Parameter obj should be final. | 440 |
| Parameter validatorAction should be final. | 441 |
| Parameter field should be final. | 442 |
| Parameter actionMessages should be final. | 443 |
| Parameter httpServletRequest should be final. | 444 |
| 'if' construct must use '{}'s. | 450 |
| Missing a Javadoc comment. | 455 |
| Parameter references should be final. | 455 |
| Missing a Javadoc comment. | 466 |
| Parameter s should be final. | 466 |
| '{' is not preceded with whitespace. | 466 |
| Line contains a tab character. | 467 |
| Line contains a tab character. | 468 |
| 'if' construct must use '{}'s. | 469 |
| Line contains a tab character. | 469 |
| '127' is a magic number. | 469 |
| Line contains a tab character. | 470 |
| Line contains a tab character. | 471 |
| Violation | Message | Line |
|---|---|---|
| Unused import - uk.ac.ebi.cdb.webservice.AuthorsList. | 9 |
| Unused import - uk.ac.ebi.intenz.domain.reference.Journal. | 15 |
| Utility classes should not have a public or default constructor. | 24 |
| Line is longer than 80 characters (found 88). | 27 |
| Line is longer than 80 characters (found 102). | 29 |
| Line contains a tab character. | 33 |
| Parameter references should be final. | 33 |
| Expected @param tag for 'references'. | 33 |
| Parameter index should be final. | 33 |
| Expected @param tag for 'index'. | 33 |
| Expected @throws tag for 'DomainException'. | 34 |
| Line is longer than 80 characters (found 102). | 40 |
| 'if' construct must use '{}'s. | 42 |
| 'if' construct must use '{}'s. | 57 |
| '{' is not preceded with whitespace. | 61 |
| 'if' construct must use '{}'s. | 66 |
| '-' is not preceded with whitespace. | 66 |
| '-' is not followed by whitespace. | 66 |
| 'if' construct must use '{}'s. | 74 |
| Line is longer than 80 characters (found 89). | 74 |
| Line contains a tab character. | 93 |
| '{' is not preceded with whitespace. | 94 |
| Line contains a tab character. | 95 |
| Line contains a tab character. | 96 |
| Line contains a tab character. | 97 |
| Line is longer than 80 characters (found 83). | 109 |
| Line is longer than 80 characters (found 85). | 110 |
| Line is longer than 80 characters (found 83). | 112 |
| Missing a Javadoc comment. | 118 |
| Parameter unformattedInitials should be final. | 118 |
| Line is longer than 80 characters (found 90). | 130 |
| Missing a Javadoc comment. | 130 |
| Parameter firstPageString should be final. | 130 |
| Parameter lastPageString should be final. | 130 |
| Line is longer than 80 characters (found 88). | 133 |
| Violation | Message | Line |
|---|---|---|
| Line contains a tab character. | 15 |
| Method 'compare' is not designed for extension - needs to be abstract, final or empty. | 15 |
| Missing a Javadoc comment. | 15 |
| Parameter o1 should be final. | 15 |
| Parameter o2 should be final. | 15 |
| Line contains a tab character. | 16 |
| Line contains a tab character. | 17 |
| 'if' construct must use '{}'s. | 18 |
| Line contains a tab character. | 18 |
| Line contains a tab character. | 19 |
| Line contains a tab character. | 20 |
| Line contains a tab character. | 21 |
| '{' is not preceded with whitespace. | 21 |
| Line contains a tab character. | 22 |
| Line contains a tab character. | 23 |
| '{' is not preceded with whitespace. | 23 |
| Line contains a tab character. | 24 |
| Line contains a tab character. | 25 |
| Line contains a tab character. | 26 |
| '{' is not preceded with whitespace. | 26 |
| Line contains a tab character. | 27 |
| Line contains a tab character. | 28 |
| '{' is not preceded with whitespace. | 28 |
| Line contains a tab character. | 29 |
| Line contains a tab character. | 30 |
| Line contains a tab character. | 31 |
| Line contains a tab character. | 32 |
| Violation | Message | Line |
|---|---|---|
| Unused import - uk.ac.ebi.rhea.webapp.SessionManager. | 58 |
| Line is longer than 80 characters (found 94). | 63 |
| Line is longer than 80 characters (found 87). | 64 |
| Line is longer than 80 characters (found 90). | 65 |
| Line is longer than 80 characters (found 116). | 66 |
| Line is longer than 80 characters (found 127). | 70 |
| Line is longer than 80 characters (found 117). | 71 |
| Line is longer than 80 characters (found 118). | 73 |
| Line contains a tab character. | 82 |
| Line is longer than 80 characters (found 89). | 83 |
| Line contains a tab character. | 83 |
| Line is longer than 80 characters (found 117). | 84 |
| Line contains a tab character. | 84 |
| Line is longer than 80 characters (found 104). | 85 |
| Line contains a tab character. | 85 |
| Line contains a tab character. | 86 |
| Line contains a tab character. | 87 |
| Name 'UOW_ID' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 87 |
| Variable 'UOW_ID' must be private and have accessor methods. | 87 |
| Line contains a tab character. | 89 |
| Line is longer than 80 characters (found 92). | 90 |
| Line contains a tab character. | 90 |
| Line is longer than 80 characters (found 82). | 91 |
| Line contains a tab character. | 91 |
| Line is longer than 80 characters (found 105). | 92 |
| Line contains a tab character. | 92 |
| Line contains a tab character. | 93 |
| Line is longer than 80 characters (found 90). | 94 |
| Line contains a tab character. | 94 |
| Line contains a tab character. | 96 |
| Line contains a tab character. | 97 |
| Line contains a tab character. | 98 |
| Line contains a tab character. | 99 |
| Line has trailing spaces. | 100 |
| Line contains a tab character. | 100 |
| Line contains a tab character. | 101 |
| Missing a Javadoc comment. | 101 |
| Variable 'enzymeReactionMapper' must be private and have accessor methods. | 101 |
| Line contains a tab character. | 103 |
| Missing a Javadoc comment. | 103 |
| Variable 'enzymeEntryMapper' must be private and have accessor methods. | 103 |
| Line contains a tab character. | 105 |
| Line contains a tab character. | 106 |
| Line contains a tab character. | 107 |
| Line contains a tab character. | 108 |
| Line contains a tab character. | 109 |
| Line contains a tab character. | 110 |
| Line has trailing spaces. | 111 |
| Line contains a tab character. | 111 |
| Line contains a tab character. | 112 |
| Missing a Javadoc comment. | 112 |
| Parameter enzymeReactionMapper should be final. | 112 |
| 'enzymeReactionMapper' hides a field. | 112 |
| '{' is not preceded with whitespace. | 112 |
| Line is longer than 80 characters (found 88). | 113 |
| Line contains a tab character. | 113 |
| Line contains a tab character. | 114 |
| Line has trailing spaces. | 115 |
| Line contains a tab character. | 115 |
| Line contains a tab character. | 116 |
| Missing a Javadoc comment. | 116 |
| Parameter enzymeReactionMapper should be final. | 116 |
| 'enzymeReactionMapper' hides a field. | 116 |
| Line contains a tab character. | 117 |
| Parameter enzymeEntryMapper should be final. | 117 |
| 'enzymeEntryMapper' hides a field. | 117 |
| '{' is not preceded with whitespace. | 117 |
| Line contains a tab character. | 118 |
| Line contains a tab character. | 119 |
| Line contains a tab character. | 120 |
| Line contains a tab character. | 121 |
| Line has trailing spaces. | 122 |
| Line contains a tab character. | 122 |
| Line contains a tab character. | 123 |
| Method 'finalize' is not designed for extension - needs to be abstract, final or empty. | 123 |
| Line contains a tab character. | 124 |
| Line contains a tab character. | 125 |
| Line contains a tab character. | 126 |
| Line contains a tab character. | 127 |
| Line contains a tab character. | 129 |
| Line is longer than 80 characters (found 106). | 130 |
| Line contains a tab character. | 130 |
| Line contains a tab character. | 131 |
| Line contains a tab character. | 132 |
| Line contains a tab character. | 133 |
| Line contains a tab character. | 134 |
| Method 'register' is not designed for extension - needs to be abstract, final or empty. | 134 |
| Parameter enzymeUnderDevelopment should be final. | 134 |
| 'if' construct must use '{}'s. | 135 |
| Line is longer than 80 characters (found 139). | 135 |
| Line contains a tab character. | 135 |
| Line contains a tab character. | 136 |
| Line is longer than 80 characters (found 83). | 137 |
| Line contains a tab character. | 137 |
| Line contains a tab character. | 138 |
| Line contains a tab character. | 139 |
| Line contains a tab character. | 140 |
| Line is longer than 80 characters (found 105). | 141 |
| Line contains a tab character. | 141 |
| Line contains a tab character. | 142 |
| Line contains a tab character. | 144 |
| Line is longer than 80 characters (found 123). | 145 |
| Line contains a tab character. | 145 |
| Line contains a tab character. | 146 |
| Line contains a tab character. | 147 |
| Line contains a tab character. | 148 |
| Line contains a tab character. | 149 |
| Line contains a tab character. | 150 |
| Line is longer than 80 characters (found 98). | 151 |
| Line contains a tab character. | 151 |
| Line contains a tab character. | 152 |
| Line contains a tab character. | 153 |
| Line is longer than 80 characters (found 107). | 154 |
| Line contains a tab character. | 154 |
| Line contains a tab character. | 155 |
| Line contains a tab character. | 156 |
| Line contains a tab character. | 157 |
| Line contains a tab character. | 158 |
| Line has trailing spaces. | 159 |
| Line contains a tab character. | 159 |
| Line is longer than 80 characters (found 112). | 160 |
| Line contains a tab character. | 160 |
| Unused @throws tag for 'DeregisterException'. | 160 |
| Line contains a tab character. | 161 |
| Line contains a tab character. | 162 |
| Line contains a tab character. | 163 |
| Method 'commit' is not designed for extension - needs to be abstract, final or empty. | 163 |
| Parameter enzymeUnderDevelopment should be final. | 163 |
| Parameter con should be final. | 163 |
| Line is longer than 80 characters (found 99). | 164 |
| Line contains a tab character. | 164 |
| Redundant throws: 'EcException' is subclass of 'DomainException'. | 164 |
| Redundant throws: 'NumberFormatException' is unchecked exception. | 164 |
| 'if' construct must use '{}'s. | 165 |
| Line is longer than 80 characters (found 139). | 165 |
| Line contains a tab character. | 165 |
| 'if' construct must use '{}'s. | 166 |
| Line is longer than 80 characters (found 101). | 166 |
| Line contains a tab character. | 166 |
| Line is longer than 80 characters (found 96). | 168 |
| Line contains a tab character. | 168 |
| Line contains a tab character. | 170 |
| Line is longer than 80 characters (found 106). | 171 |
| Line contains a tab character. | 171 |
| Line contains a tab character. | 172 |
| Line contains a tab character. | 173 |
| Line contains a tab character. | 174 |
| Line contains a tab character. | 175 |
| Line is longer than 80 characters (found 171). | 177 |
| Line contains a tab character. | 177 |
| 'if' construct must use '{}'s. | 178 |
| Line is longer than 80 characters (found 132). | 178 |
| Line contains a tab character. | 178 |
| Line contains a tab character. | 180 |
| Line contains a tab character. | 181 |
| Line contains a tab character. | 182 |
| Line is longer than 80 characters (found 88). | 183 |
| Line contains a tab character. | 183 |
| Line contains a tab character. | 184 |
| Line contains a tab character. | 185 |
| '{' is not preceded with whitespace. | 185 |
| Line is longer than 80 characters (found 81). | 186 |
| Line contains a tab character. | 186 |
| Line is longer than 80 characters (found 81). | 187 |
| Line contains a tab character. | 187 |
| Line is longer than 80 characters (found 102). | 188 |
| Line contains a tab character. | 188 |
| Line is longer than 80 characters (found 81). | 189 |
| Line contains a tab character. | 189 |
| Line contains a tab character. | 190 |
| Line is longer than 80 characters (found 81). | 191 |
| Line contains a tab character. | 191 |
| Line is longer than 80 characters (found 96). | 192 |
| Line contains a tab character. | 192 |
| Line contains a tab character. | 193 |
| Line contains a tab character. | 194 |
| Line is longer than 80 characters (found 81). | 195 |
| Line contains a tab character. | 195 |
| Line is longer than 80 characters (found 102). | 196 |
| Line contains a tab character. | 196 |
| Line contains a tab character. | 197 |
| Line contains a tab character. | 198 |
| Line is longer than 80 characters (found 81). | 199 |
| Line contains a tab character. | 199 |
| Line is longer than 80 characters (found 102). | 200 |
| Line contains a tab character. | 200 |
| Line contains a tab character. | 201 |
| Line is longer than 80 characters (found 81). | 202 |
| Line contains a tab character. | 202 |
| Line is longer than 80 characters (found 96). | 203 |
| Line contains a tab character. | 203 |
| Line is longer than 80 characters (found 111). | 204 |
| Line contains a tab character. | 204 |
| Line contains a tab character. | 205 |
| Line contains a tab character. | 206 |
| Line contains a tab character. | 207 |
| Line contains a tab character. | 209 |
| Line is longer than 80 characters (found 123). | 210 |
| Line contains a tab character. | 210 |
| Line contains a tab character. | 211 |
| Line contains a tab character. | 212 |
| Line contains a tab character. | 213 |
| Line contains a tab character. | 214 |
| Line contains a tab character. | 215 |
| Line contains a tab character. | 216 |
| Line contains a tab character. | 217 |
| Line contains a tab character. | 218 |
| Line contains a tab character. | 219 |
| Line contains a tab character. | 220 |
| Line contains a tab character. | 221 |
| Line contains a tab character. | 222 |
| Line is longer than 80 characters (found 119). | 223 |
| Line contains a tab character. | 223 |
| Line is longer than 80 characters (found 107). | 224 |
| Line contains a tab character. | 224 |
| Line contains a tab character. | 225 |
| Line contains a tab character. | 226 |
| Line contains a tab character. | 227 |
| Line is longer than 80 characters (found 102). | 228 |
| Line contains a tab character. | 228 |
| Parameter enzymeUnderDevelopment should be final. | 228 |
| Parameter copy should be final. | 228 |
| Parameter con should be final. | 228 |
| Line contains a tab character. | 229 |
| Line is longer than 80 characters (found 111). | 230 |
| Line contains a tab character. | 230 |
| Line contains a tab character. | 231 |
| Line contains a tab character. | 232 |
| Line contains a tab character. | 233 |
| 'if' construct must use '{}'s. | 235 |
| Line is longer than 80 characters (found 88). | 235 |
| Line contains a tab character. | 235 |
| 'if' construct must use '{}'s. | 236 |
| Line is longer than 80 characters (found 115). | 236 |
| Line contains a tab character. | 236 |
| 'if' construct must use '{}'s. | 237 |
| Line is longer than 80 characters (found 107). | 237 |
| Line contains a tab character. | 237 |
| 'if' construct must use '{}'s. | 238 |
| Line is longer than 80 characters (found 103). | 238 |
| Line contains a tab character. | 238 |
| 'if' construct must use '{}'s. | 239 |
| Line is longer than 80 characters (found 117). | 239 |
| Line contains a tab character. | 239 |
| Line contains a tab character. | 241 |
| Line contains a tab character. | 242 |
| Line is longer than 80 characters (found 90). | 243 |
| Line contains a tab character. | 243 |
| Line is longer than 80 characters (found 103). | 244 |
| Line contains a tab character. | 244 |
| Line is longer than 80 characters (found 96). | 245 |
| Line contains a tab character. | 245 |
| Line is longer than 80 characters (found 105). | 246 |
| Line contains a tab character. | 246 |
| Line contains a tab character. | 247 |
| Line contains a tab character. | 248 |
| Line contains a tab character. | 249 |
| Line contains a tab character. | 250 |
| Line contains a tab character. | 251 |
| Line contains a tab character. | 252 |
| Line is longer than 80 characters (found 111). | 254 |
| Line contains a tab character. | 254 |
| Missing a Javadoc comment. | 254 |
| Parameter reactions should be final. | 254 |
| Parameter enzymeId should be final. | 254 |
| Parameter status should be final. | 254 |
| Parameter con should be final. | 254 |
| Line contains a tab character. | 255 |
| Line is longer than 80 characters (found 85). | 256 |
| Line contains a tab character. | 256 |
| Line is longer than 80 characters (found 83). | 257 |
| Line contains a tab character. | 257 |
| Line contains a tab character. | 258 |
| Line contains a tab character. | 259 |
| Line contains a tab character. | 260 |
| Line contains a tab character. | 261 |
| Line is longer than 80 characters (found 85). | 262 |
| Line contains a tab character. | 262 |
| Line is longer than 80 characters (found 86). | 263 |
| Line contains a tab character. | 263 |
| Line contains a tab character. | 264 |
| Line contains a tab character. | 265 |
| Line contains a tab character. | 266 |
| Line is longer than 80 characters (found 106). | 268 |
| Line contains a tab character. | 268 |
| Missing a Javadoc comment. | 268 |
| Parameter names should be final. | 268 |
| Parameter enzymeId should be final. | 268 |
| Parameter status should be final. | 268 |
| Parameter type should be final. | 268 |
| Line contains a tab character. | 269 |
| Parameter con should be final. | 269 |
| Line contains a tab character. | 270 |
| Line is longer than 80 characters (found 83). | 271 |
| Line contains a tab character. | 271 |
| Line contains a tab character. | 272 |
| Line contains a tab character. | 273 |
| Line contains a tab character. | 274 |
| Line contains a tab character. | 275 |
| Line contains a tab character. | 276 |
| Line is longer than 80 characters (found 93). | 277 |
| Line contains a tab character. | 277 |
| Line contains a tab character. | 278 |
| Line contains a tab character. | 279 |
| Line contains a tab character. | 280 |
| Line is longer than 80 characters (found 82). | 281 |
| Line contains a tab character. | 281 |
| Line contains a tab character. | 282 |
| Line contains a tab character. | 283 |
| Line contains a tab character. | 285 |
| Line is longer than 80 characters (found 122). | 286 |
| Line contains a tab character. | 286 |
| Line contains a tab character. | 287 |
| Line contains a tab character. | 288 |
| Line is longer than 80 characters (found 119). | 289 |
| Line contains a tab character. | 289 |
| Line is longer than 80 characters (found 107). | 290 |
| Line contains a tab character. | 290 |
| Line contains a tab character. | 291 |
| Line contains a tab character. | 292 |
| Line is longer than 80 characters (found 130). | 293 |
| Line contains a tab character. | 293 |
| Parameter enzymeUnderDevelopment should be final. | 293 |
| Parameter copy should be final. | 293 |
| Parameter con should be final. | 293 |
| Line is longer than 80 characters (found 111). | 294 |
| Line contains a tab character. | 294 |
| Line contains a tab character. | 295 |
| Line contains a tab character. | 296 |
| Line is longer than 80 characters (found 125). | 297 |
| Line contains a tab character. | 297 |
| '||' should be on a new line. | 297 |
| Line is longer than 80 characters (found 131). | 298 |
| Line contains a tab character. | 298 |
| '||' should be on a new line. | 298 |
| Line is longer than 80 characters (found 103). | 299 |
| Line contains a tab character. | 299 |
| Line is longer than 80 characters (found 83). | 300 |
| Line contains a tab character. | 300 |
| Line is longer than 80 characters (found 141). | 301 |
| Line contains a tab character. | 301 |
| Line is longer than 80 characters (found 105). | 302 |
| Line contains a tab character. | 302 |
| Line is longer than 80 characters (found 122). | 303 |
| Line contains a tab character. | 303 |
| Line contains a tab character. | 304 |
| '{' is not preceded with whitespace. | 304 |
| Line contains a tab character. | 305 |
| Line is longer than 80 characters (found 109). | 306 |
| Line contains a tab character. | 306 |
| Line is longer than 80 characters (found 113). | 307 |
| Line contains a tab character. | 307 |
| Line contains a tab character. | 308 |
| Line is longer than 80 characters (found 109). | 309 |
| Line contains a tab character. | 309 |
| Line is longer than 80 characters (found 113). | 310 |
| Line contains a tab character. | 310 |
| Line contains a tab character. | 311 |
| Line contains a tab character. | 312 |
| Line contains a tab character. | 313 |
| Line is longer than 80 characters (found 111). | 315 |
| Line contains a tab character. | 315 |
| Missing a Javadoc comment. | 315 |
| Parameter cofactors should be final. | 315 |
| Parameter enzymeId should be final. | 315 |
| Parameter status should be final. | 315 |
| Parameter con should be final. | 315 |
| Line contains a tab character. | 316 |
| Line is longer than 80 characters (found 81). | 317 |
| Line contains a tab character. | 317 |
| Line is longer than 80 characters (found 83). | 318 |
| Line contains a tab character. | 318 |
| Line contains a tab character. | 319 |
| Line contains a tab character. | 320 |
| Line contains a tab character. | 321 |
| Line contains a tab character. | 322 |
| Line is longer than 80 characters (found 88). | 323 |
| Line contains a tab character. | 323 |
| Line contains a tab character. | 324 |
| Line contains a tab character. | 325 |
| '{' is not preceded with whitespace. | 325 |
| Line contains a tab character. | 326 |
| Line contains a tab character. | 327 |
| Line is longer than 80 characters (found 84). | 328 |
| Line contains a tab character. | 328 |
| Line contains a tab character. | 329 |
| Line is longer than 80 characters (found 87). | 330 |
| Line contains a tab character. | 330 |
| Line is longer than 80 characters (found 84). | 331 |
| Line contains a tab character. | 331 |
| Line contains a tab character. | 333 |
| Line contains a tab character. | 335 |
| Line is longer than 80 characters (found 98). | 336 |
| Line contains a tab character. | 336 |
| Line contains a tab character. | 337 |
| Line is longer than 80 characters (found 85). | 338 |
| Line contains a tab character. | 338 |
| Line is longer than 80 characters (found 107). | 339 |
| Line contains a tab character. | 339 |
| Line contains a tab character. | 340 |
| Line contains a tab character. | 341 |
| Line is longer than 80 characters (found 121). | 342 |
| Line contains a tab character. | 342 |
| Parameter enzymeUnderDevelopment should be final. | 342 |
| Parameter con should be final. | 342 |
| Expected @throws tag for 'DomainException'. | 342 |
| Line is longer than 80 characters (found 111). | 343 |
| Line contains a tab character. | 343 |
| Line contains a tab character. | 344 |
| Line is longer than 80 characters (found 139). | 345 |
| Line contains a tab character. | 345 |
| Line contains a tab character. | 346 |
| Line is longer than 80 characters (found 93). | 347 |
| Line contains a tab character. | 347 |
| Line is longer than 80 characters (found 94). | 348 |
| Line contains a tab character. | 348 |
| Line contains a tab character. | 349 |
| Line is longer than 80 characters (found 99). | 351 |
| Line contains a tab character. | 351 |
| Missing a Javadoc comment. | 351 |
| Parameter comments should be final. | 351 |
| Parameter enzymeId should be final. | 351 |
| Parameter status should be final. | 351 |
| Parameter con should be final. | 351 |
| Line contains a tab character. | 352 |
| Line contains a tab character. | 353 |
| Line is longer than 80 characters (found 83). | 354 |
| Line contains a tab character. | 354 |
| Line contains a tab character. | 355 |
| Line contains a tab character. | 356 |
| Line is longer than 80 characters (found 84). | 357 |
| Line contains a tab character. | 357 |
| Line contains a tab character. | 358 |
| Line is longer than 80 characters (found 99). | 359 |
| Line contains a tab character. | 359 |
| Line contains a tab character. | 360 |
| Line is longer than 80 characters (found 84). | 362 |
| Line contains a tab character. | 362 |
| Line is longer than 80 characters (found 82). | 363 |
| Line contains a tab character. | 363 |
| Line contains a tab character. | 365 |
| Line is longer than 80 characters (found 87). | 367 |
| Line contains a tab character. | 367 |
| Missing a Javadoc comment. | 367 |
| Parameter references should be final. | 367 |
| Parameter enzymeId should be final. | 367 |
| Parameter status should be final. | 367 |
| Line is longer than 80 characters (found 90). | 368 |
| Line contains a tab character. | 368 |
| Parameter source should be final. | 368 |
| Parameter con should be final. | 368 |
| Line is longer than 80 characters (found 82). | 369 |
| Line contains a tab character. | 369 |
| Line is longer than 80 characters (found 83). | 370 |
| Line contains a tab character. | 370 |
| Line contains a tab character. | 371 |
| Line contains a tab character. | 372 |
| Line contains a tab character. | 373 |
| Line contains a tab character. | 374 |
| Line is longer than 80 characters (found 101). | 375 |
| Line contains a tab character. | 375 |
| Line contains a tab character. | 376 |
| Line contains a tab character. | 378 |
| Line is longer than 80 characters (found 90). | 379 |
| Line contains a tab character. | 379 |
| Line is longer than 80 characters (found 86). | 380 |
| Line contains a tab character. | 380 |
| Line contains a tab character. | 381 |
| Line contains a tab character. | 382 |
| Line contains a tab character. | 385 |
| Line contains a tab character. | 387 |
| Line contains a tab character. | 388 |
| Line contains a tab character. | 389 |
| Line is longer than 80 characters (found 93). | 390 |
| Line contains a tab character. | 390 |
| Line is longer than 80 characters (found 107). | 391 |
| Line contains a tab character. | 391 |
| Line contains a tab character. | 392 |
| Line is longer than 80 characters (found 88). | 393 |
| Line contains a tab character. | 393 |
| Parameter enzymeUnderDevelopment should be final. | 393 |
| Parameter con should be final. | 393 |
| Line contains a tab character. | 394 |
| Expected @throws tag for 'SQLException'. | 394 |
| Expected @throws tag for 'EcException'. | 394 |
| Redundant throws: 'EcException' is subclass of 'DomainException'. | 394 |
| Expected @throws tag for 'DomainException'. | 394 |
| Line is longer than 80 characters (found 111). | 395 |
| Line contains a tab character. | 395 |
| Line contains a tab character. | 396 |
| Line contains a tab character. | 397 |
| Line contains a tab character. | 398 |
| Line contains a tab character. | 399 |
| '{' is not preceded with whitespace. | 399 |
| Line contains a tab character. | 400 |
| Line contains a tab character. | 401 |
| Line contains a tab character. | 402 |
| Line contains a tab character. | 403 |
| Line contains a tab character. | 404 |
| Line contains a tab character. | 405 |
| Line contains a tab character. | 406 |
| Line contains a tab character. | 408 |
| Line is longer than 80 characters (found 121). | 409 |
| Line contains a tab character. | 409 |
| Line contains a tab character. | 410 |
| Line contains a tab character. | 411 |
| Line is longer than 80 characters (found 107). | 412 |
| Line contains a tab character. | 412 |
| Line contains a tab character. | 413 |
| Line contains a tab character. | 414 |
| Line contains a tab character. | 415 |
| Line is longer than 80 characters (found 85). | 416 |
| Line contains a tab character. | 416 |
| Parameter enzymeUnderDevelopment should be final. | 416 |
| Parameter con should be final. | 416 |
| Line contains a tab character. | 417 |
| Line is longer than 80 characters (found 111). | 418 |
| Line contains a tab character. | 418 |
| Line contains a tab character. | 419 |
| Line contains a tab character. | 420 |
| Line contains a tab character. | 421 |
| Line is longer than 80 characters (found 117). | 422 |
| Line contains a tab character. | 422 |
| Line is longer than 80 characters (found 88). | 423 |
| Line contains a tab character. | 423 |
| Line is longer than 80 characters (found 97). | 424 |
| Line contains a tab character. | 424 |
| Line contains a tab character. | 425 |
| Line contains a tab character. | 426 |
| Line contains a tab character. | 427 |
| Line contains a tab character. | 428 |
| Line contains a tab character. | 430 |
| Line is longer than 80 characters (found 86). | 431 |
| Line contains a tab character. | 431 |
| Line contains a tab character. | 432 |
| Line contains a tab character. | 433 |
| Line is longer than 80 characters (found 107). | 434 |
| Line contains a tab character. | 434 |
| Line contains a tab character. | 435 |
| Line is longer than 80 characters (found 104). | 436 |
| Line contains a tab character. | 436 |
| Parameter enzymeUnderDevelopment should be final. | 436 |
| Parameter con should be final. | 436 |
| Expected @throws tag for 'SQLException'. | 436 |
| Line is longer than 80 characters (found 111). | 437 |
| Line contains a tab character. | 437 |
| Line contains a tab character. | 438 |
| Line contains a tab character. | 439 |
| Line contains a tab character. | 440 |
| Line contains a tab character. | 441 |
| Line contains a tab character. | 442 |
| Line is longer than 80 characters (found 99). | 443 |
| Line contains a tab character. | 443 |
| Line contains a tab character. | 444 |
| Line contains a tab character. | 445 |
| Line contains a tab character. | 446 |
| Line is longer than 80 characters (found 96). | 447 |
| Line contains a tab character. | 447 |
| Line contains a tab character. | 448 |
| 'if' construct must use '{}'s. | 449 |
| Line contains a tab character. | 449 |
| 'if' is not followed by whitespace. | 449 |
| '&&' should be on a new line. | 449 |
| Line is longer than 80 characters (found 100). | 450 |
| Line contains a tab character. | 450 |
| Line is longer than 80 characters (found 105). | 451 |
| Line contains a tab character. | 451 |
| Line is longer than 80 characters (found 99). | 452 |
| Line contains a tab character. | 452 |
| Line is longer than 80 characters (found 94). | 453 |
| Line contains a tab character. | 453 |
| Line contains a tab character. | 455 |
| Line contains a tab character. | 457 |
| Line contains a tab character. | 458 |
| Line contains a tab character. | 459 |
| Line contains a tab character. | 460 |
| Line is longer than 80 characters (found 107). | 461 |
| Line contains a tab character. | 461 |
| Line contains a tab character. | 462 |
| Line is longer than 80 characters (found 108). | 463 |
| Line contains a tab character. | 463 |
| Parameter enzymeUnderDevelopment should be final. | 463 |
| Parameter con should be final. | 463 |
| Expected @throws tag for 'SQLException'. | 463 |
| Line is longer than 80 characters (found 111). | 464 |
| Line contains a tab character. | 464 |
| Line contains a tab character. | 465 |
| Line contains a tab character. | 466 |
| Line is longer than 80 characters (found 90). | 467 |
| Line contains a tab character. | 467 |
| Line is longer than 80 characters (found 85). | 468 |
| Line contains a tab character. | 468 |
| Line is longer than 80 characters (found 86). | 469 |
| Line contains a tab character. | 469 |
| Line contains a tab character. | 470 |
| Line contains a tab character. | 472 |
| Line is longer than 80 characters (found 103). | 473 |
| Line contains a tab character. | 473 |
| Line contains a tab character. | 474 |
| Line contains a tab character. | 475 |
| Line contains a tab character. | 477 |
| Line contains a tab character. | 478 |
| Line contains a tab character. | 479 |
| Line contains a tab character. | 480 |
| Line is longer than 80 characters (found 107). | 481 |
| Line contains a tab character. | 481 |
| Line contains a tab character. | 482 |
| Line is longer than 80 characters (found 108). | 483 |
| Line contains a tab character. | 483 |
| Parameter enzymeUnderDevelopment should be final. | 483 |
| Parameter con should be final. | 483 |
| Expected @throws tag for 'SQLException'. | 483 |
| Line is longer than 80 characters (found 111). | 484 |
| Line contains a tab character. | 484 |
| Line contains a tab character. | 485 |
| Line contains a tab character. | 486 |
| Line is longer than 80 characters (found 84). | 487 |
| Line contains a tab character. | 487 |
| Line contains a tab character. | 488 |
| Line is longer than 80 characters (found 88). | 489 |
| Line contains a tab character. | 489 |
| Line contains a tab character. | 490 |
| Line contains a tab character. | 492 |
| Line is longer than 80 characters (found 95). | 493 |
| Line contains a tab character. | 493 |
| Line is longer than 80 characters (found 110). | 494 |
| Line contains a tab character. | 494 |
| Line is longer than 80 characters (found 102). | 495 |
| Line contains a tab character. | 495 |
| Line contains a tab character. | 496 |
| Line contains a tab character. | 497 |
| Line contains a tab character. | 499 |
| Line contains a tab character. | 500 |
| Line contains a tab character. | 501 |
| Line contains a tab character. | 502 |
| Line is longer than 80 characters (found 107). | 503 |
| Line contains a tab character. | 503 |
| Line contains a tab character. | 504 |
| Line is longer than 80 characters (found 121). | 505 |
| Line contains a tab character. | 505 |
| Parameter enzymeUnderDevelopment should be final. | 505 |
| Parameter con should be final. | 505 |
| Expected @throws tag for 'SQLException'. | 505 |
| Expected @throws tag for 'DomainException'. | 505 |
| Line is longer than 80 characters (found 111). | 506 |
| Line contains a tab character. | 506 |
| Line contains a tab character. | 507 |
| Line is longer than 80 characters (found 145). | 508 |
| Line contains a tab character. | 508 |
| Line contains a tab character. | 509 |
| Line is longer than 80 characters (found 83). | 510 |
| Line contains a tab character. | 510 |
| Line is longer than 80 characters (found 102). | 511 |
| Line contains a tab character. | 511 |
| Line is longer than 80 characters (found 102). | 512 |
| Line contains a tab character. | 512 |
| Line contains a tab character. | 513 |
| Line contains a tab character. | 514 |
| Line contains a tab character. | 516 |
| Line contains a tab character. | 517 |
| Line contains a tab character. | 518 |
| Line contains a tab character. | 519 |
| Line is longer than 80 characters (found 107). | 520 |
| Line contains a tab character. | 520 |
| Line contains a tab character. | 521 |
| Line is longer than 80 characters (found 107). | 522 |
| Line contains a tab character. | 522 |
| Parameter enzymeUnderDevelopment should be final. | 522 |
| Parameter con should be final. | 522 |
| Expected @throws tag for 'SQLException'. | 522 |
| Line is longer than 80 characters (found 111). | 523 |
| Line contains a tab character. | 523 |
| Line contains a tab character. | 524 |
| Line is longer than 80 characters (found 84). | 525 |
| Line contains a tab character. | 525 |
| Line contains a tab character. | 526 |
| Line contains a tab character. | 527 |
| Line is longer than 80 characters (found 99). | 528 |
| Line contains a tab character. | 528 |
| Line contains a tab character. | 529 |
| Line contains a tab character. | 531 |
| Line is longer than 80 characters (found 92). | 532 |
| Line contains a tab character. | 532 |
| Line is longer than 80 characters (found 108). | 533 |
| Line contains a tab character. | 533 |
| Line is longer than 80 characters (found 102). | 534 |
| Line contains a tab character. | 534 |
| Line contains a tab character. | 535 |
| Line contains a tab character. | 536 |
| Line contains a tab character. | 538 |
| Line contains a tab character. | 539 |
| Line contains a tab character. | 540 |
| Line contains a tab character. | 541 |
| Line is longer than 80 characters (found 107). | 542 |
| Line contains a tab character. | 542 |
| Line contains a tab character. | 543 |
| Line is longer than 80 characters (found 109). | 544 |
| Line contains a tab character. | 544 |
| Parameter enzymeUnderDevelopment should be final. | 544 |
| Parameter con should be final. | 544 |
| Expected @throws tag for 'SQLException'. | 544 |
| Line is longer than 80 characters (found 111). | 545 |
| Line contains a tab character. | 545 |
| Line contains a tab character. | 546 |
| Line contains a tab character. | 547 |
| Line contains a tab character. | 548 |
| Line contains a tab character. | 549 |
| Line is longer than 80 characters (found 101). | 550 |
| Line contains a tab character. | 550 |
| Line contains a tab character. | 551 |
| Line contains a tab character. | 553 |
| Line is longer than 80 characters (found 98). | 554 |
| Line contains a tab character. | 554 |
| Line is longer than 80 characters (found 112). | 555 |
| Line contains a tab character. | 555 |
| Line is longer than 80 characters (found 102). | 556 |
| Line contains a tab character. | 556 |
| Line contains a tab character. | 557 |
| Line contains a tab character. | 558 |
| Line is longer than 80 characters (found 85). | 560 |
| Line contains a tab character. | 560 |
| Line contains a tab character. | 562 |
| Line is longer than 80 characters (found 85). | 563 |
| Line contains a tab character. | 563 |
| Line is longer than 80 characters (found 94). | 564 |
| Line contains a tab character. | 564 |
| Line contains a tab character. | 565 |
| Line is longer than 80 characters (found 103). | 566 |
| Line contains a tab character. | 566 |
| Line is longer than 80 characters (found 89). | 567 |
| Line contains a tab character. | 567 |
| Line is longer than 80 characters (found 84). | 568 |
| Line contains a tab character. | 568 |
| Line contains a tab character. | 569 |
| Line contains a tab character. | 570 |
| Method 'getEnzymeNameObject' is not designed for extension - needs to be abstract, final or empty. | 570 |
| Parameter enzymeNameDTO should be final. | 570 |
| Line is longer than 80 characters (found 93). | 571 |
| Line contains a tab character. | 571 |
| 'if' construct must use '{}'s. | 572 |
| Line is longer than 80 characters (found 98). | 572 |
| Line contains a tab character. | 572 |
| Line is longer than 80 characters (found 91). | 573 |
| Line contains a tab character. | 573 |
| Line is longer than 80 characters (found 96). | 574 |
| Line contains a tab character. | 574 |
| Line is longer than 80 characters (found 93). | 575 |
| Line contains a tab character. | 575 |
| 'if' construct must use '{}'s. | 576 |
| Line is longer than 80 characters (found 102). | 576 |
| Line contains a tab character. | 576 |
| Line is longer than 80 characters (found 95). | 577 |
| Line contains a tab character. | 577 |
| Line is longer than 80 characters (found 96). | 578 |
| Line contains a tab character. | 578 |
| Line is longer than 80 characters (found 93). | 579 |
| Line contains a tab character. | 579 |
| Line is longer than 80 characters (found 147). | 580 |
| Line contains a tab character. | 580 |
| Line is longer than 80 characters (found 88). | 581 |
| Line contains a tab character. | 581 |
| Line is longer than 80 characters (found 85). | 582 |
| Line contains a tab character. | 582 |
| Line contains a tab character. | 583 |
| Line contains a tab character. | 585 |
| Line contains a tab character. | 586 |
| Line is longer than 80 characters (found 92). | 587 |
| Line contains a tab character. | 587 |
| Line contains a tab character. | 588 |
| Line is longer than 80 characters (found 99). | 589 |
| Line contains a tab character. | 589 |
| Line is longer than 80 characters (found 85). | 590 |
| Line contains a tab character. | 590 |
| Line is longer than 80 characters (found 82). | 591 |
| Line contains a tab character. | 591 |
| Line contains a tab character. | 592 |
| Line contains a tab character. | 593 |
| Parameter reactionDTO should be final. | 593 |
| Line is longer than 80 characters (found 89). | 594 |
| Line contains a tab character. | 594 |
| Line is longer than 80 characters (found 112). | 595 |
| Line contains a tab character. | 595 |
| Line contains a tab character. | 596 |
| Line is longer than 80 characters (found 98). | 597 |
| Line contains a tab character. | 597 |
| Line contains a tab character. | 598 |
| Line contains a tab character. | 599 |
| Line contains a tab character. | 601 |
| Line is longer than 80 characters (found 83). | 602 |
| Line contains a tab character. | 602 |
| Line is longer than 80 characters (found 92). | 603 |
| Line contains a tab character. | 603 |
| Line contains a tab character. | 604 |
| Line is longer than 80 characters (found 99). | 605 |
| Line contains a tab character. | 605 |
| Line is longer than 80 characters (found 85). | 606 |
| Line contains a tab character. | 606 |
| Line is longer than 80 characters (found 82). | 607 |
| Line contains a tab character. | 607 |
| Line contains a tab character. | 608 |
| Line is longer than 80 characters (found 95). | 609 |
| Line contains a tab character. | 609 |
| Expected @param tag for 'con'. | 609 |
| Line is longer than 80 characters (found 89). | 610 |
| Line contains a tab character. | 610 |
| Line contains a tab character. | 611 |
| Line contains a tab character. | 612 |
| '{' is not preceded with whitespace. | 612 |
| Line contains a tab character. | 613 |
| '{' is not preceded with whitespace. | 616 |
| '{' is not preceded with whitespace. | 625 |
| Line is longer than 80 characters (found 93). | 626 |
| Line contains a tab character. | 626 |
| Variable 'cofactorMapper' must be private and have accessor methods. | 626 |
| Line contains a tab character. | 627 |
| Parameter s should be final. | 627 |
| Line is longer than 80 characters (found 97). | 628 |
| Line contains a tab character. | 628 |
| Line is longer than 80 characters (found 90). | 629 |
| Line contains a tab character. | 629 |
| '{' is not preceded with whitespace. | 629 |
| Line is longer than 80 characters (found 95). | 630 |
| Line contains a tab character. | 630 |
| Line is longer than 80 characters (found 99). | 631 |
| Line contains a tab character. | 631 |
| Line is longer than 80 characters (found 96). | 632 |
| Line contains a tab character. | 632 |
| Line is longer than 80 characters (found 85). | 633 |
| Line contains a tab character. | 633 |
| Line contains a tab character. | 634 |
| Line contains a tab character. | 635 |
| Line is longer than 80 characters (found 102). | 636 |
| Line contains a tab character. | 636 |
| Line is longer than 80 characters (found 107). | 637 |
| Line contains a tab character. | 637 |
| Line contains a tab character. | 638 |
| Line contains a tab character. | 639 |
| Line contains a tab character. | 640 |
| Line is longer than 80 characters (found 86). | 641 |
| Line contains a tab character. | 642 |
| Line contains a tab character. | 643 |
| Line contains a tab character. | 644 |
| Line contains a tab character. | 645 |
| Line contains a tab character. | 646 |
| Line contains a tab character. | 647 |
| Line is longer than 80 characters (found 95). | 648 |
| Line contains a tab character. | 648 |
| Line is longer than 80 characters (found 86). | 649 |
| Line contains a tab character. | 649 |
| Line is longer than 80 characters (found 84). | 650 |
| Line contains a tab character. | 650 |
| Line is longer than 80 characters (found 109). | 651 |
| Line contains a tab character. | 651 |
| Line is longer than 80 characters (found 91). | 652 |
| Line contains a tab character. | 652 |
| Line contains a tab character. | 653 |
| Line contains a tab character. | 654 |
| Line contains a tab character. | 655 |
| Line contains a tab character. | 657 |
| Line is longer than 80 characters (found 82). | 658 |
| Line contains a tab character. | 658 |
| Line is longer than 80 characters (found 95). | 659 |
| Line contains a tab character. | 659 |
| Line contains a tab character. | 660 |
| Line is longer than 80 characters (found 108). | 661 |
| Line contains a tab character. | 661 |
| Line is longer than 80 characters (found 115). | 662 |
| Line contains a tab character. | 662 |
| Line contains a tab character. | 663 |
| Line is longer than 80 characters (found 117). | 664 |
| Line contains a tab character. | 664 |
| Line is longer than 80 characters (found 89). | 665 |
| Line contains a tab character. | 665 |
| Line is longer than 80 characters (found 82). | 666 |
| Line contains a tab character. | 666 |
| Line contains a tab character. | 667 |
| Line is longer than 80 characters (found 115). | 668 |
| Line contains a tab character. | 668 |
| Parameter links should be final. | 668 |
| Parameter uniprotLinks should be final. | 668 |
| Expected @throws tag for 'DomainException'. | 668 |
| Line contains a tab character. | 669 |
| Line is longer than 80 characters (found 91). | 670 |
| Line contains a tab character. | 670 |
| Line contains a tab character. | 671 |
| Line contains a tab character. | 672 |
| Line is longer than 80 characters (found 85). | 673 |
| Line contains a tab character. | 673 |
| Line is longer than 80 characters (found 129). | 674 |
| Line contains a tab character. | 674 |
| Line is longer than 80 characters (found 93). | 675 |
| Line contains a tab character. | 675 |
| Line contains a tab character. | 676 |
| Line is longer than 80 characters (found 96). | 677 |
| Line contains a tab character. | 677 |
| Line is longer than 80 characters (found 92). | 678 |
| Line contains a tab character. | 678 |
| Line contains a tab character. | 679 |
| Line contains a tab character. | 680 |
| Line contains a tab character. | 681 |
| Line contains a tab character. | 682 |
| Line is longer than 80 characters (found 92). | 683 |
| Line contains a tab character. | 683 |
| Line is longer than 80 characters (found 129). | 684 |
| Line contains a tab character. | 684 |
| Line is longer than 80 characters (found 93). | 685 |
| Line contains a tab character. | 685 |
| Line contains a tab character. | 686 |
| Line is longer than 80 characters (found 96). | 687 |
| Line contains a tab character. | 687 |
| Line is longer than 80 characters (found 92). | 688 |
| Line contains a tab character. | 688 |
| Line contains a tab character. | 689 |
| Line contains a tab character. | 690 |
| Line contains a tab character. | 691 |
| Line contains a tab character. | 692 |
| Line contains a tab character. | 693 |
| Line contains a tab character. | 695 |
| Line is longer than 80 characters (found 88). | 696 |
| Line contains a tab character. | 696 |
| Line is longer than 80 characters (found 91). | 697 |
| Line contains a tab character. | 697 |
| Line contains a tab character. | 698 |
| Line is longer than 80 characters (found 104). | 699 |
| Line contains a tab character. | 699 |
| Line is longer than 80 characters (found 89). | 700 |
| Line contains a tab character. | 700 |
| Line is longer than 80 characters (found 87). | 701 |
| Line contains a tab character. | 701 |
| Line contains a tab character. | 702 |
| Line contains a tab character. | 703 |
| Parameter commentDTO should be final. | 703 |
| Line is longer than 80 characters (found 87). | 704 |
| Line contains a tab character. | 704 |
| Line is longer than 80 characters (found 122). | 705 |
| Line contains a tab character. | 705 |
| Line is longer than 80 characters (found 82). | 706 |
| Line contains a tab character. | 706 |
| Line contains a tab character. | 707 |
| Line contains a tab character. | 709 |
| Line contains a tab character. | 710 |
| Line contains a tab character. | 711 |
| Line contains a tab character. | 712 |
| Line is longer than 80 characters (found 93). | 713 |
| Line contains a tab character. | 713 |
| Line contains a tab character. | 714 |
| Line is longer than 80 characters (found 108). | 715 |
| Line contains a tab character. | 715 |
| Line is longer than 80 characters (found 90). | 716 |
| Line contains a tab character. | 716 |
| Line is longer than 80 characters (found 84). | 717 |
| Line contains a tab character. | 717 |
| Line contains a tab character. | 718 |
| Line contains a tab character. | 719 |
| Line contains a tab character. | 720 |
| Line contains a tab character. | 721 |
| Parameter referenceDTO should be final. | 721 |
| Line is longer than 80 characters (found 91). | 722 |
| Line contains a tab character. | 722 |
| Line contains a tab character. | 723 |
| Line contains a tab character. | 724 |
| 'if' is not followed by whitespace. | 724 |
| Line contains a tab character. | 725 |
| Line contains a tab character. | 726 |
| Line contains a tab character. | 727 |
| Line is longer than 80 characters (found 107). | 728 |
| Line contains a tab character. | 728 |
| Line is longer than 80 characters (found 122). | 729 |
| Line contains a tab character. | 729 |
| Line is longer than 80 characters (found 121). | 730 |
| Line contains a tab character. | 730 |
| Line is longer than 80 characters (found 120). | 731 |
| Line contains a tab character. | 731 |
| Line is longer than 80 characters (found 96). | 732 |
| Line contains a tab character. | 732 |
| Line contains a tab character. | 733 |
| Line contains a tab character. | 734 |
| Line is longer than 80 characters (found 104). | 735 |
| Line contains a tab character. | 735 |
| Line is longer than 80 characters (found 120). | 736 |
| Line contains a tab character. | 736 |
| Line is longer than 80 characters (found 125). | 737 |
| Line contains a tab character. | 737 |
| Line is longer than 80 characters (found 131). | 738 |
| Line contains a tab character. | 738 |
| Line is longer than 80 characters (found 91). | 739 |
| Line contains a tab character. | 739 |
| Line is longer than 80 characters (found 96). | 740 |
| Line contains a tab character. | 740 |
| Line contains a tab character. | 741 |
| Comment matches to-do format 'TODO:'. | 742 |
| Line is longer than 80 characters (found 101). | 742 |
| Line contains a tab character. | 742 |
| Line is longer than 80 characters (found 98). | 743 |
| Line contains a tab character. | 743 |
| Line is longer than 80 characters (found 83). | 744 |
| Line contains a tab character. | 744 |
| Line is longer than 80 characters (found 83). | 745 |
| Line contains a tab character. | 745 |
| Line is longer than 80 characters (found 88). | 746 |
| Line contains a tab character. | 746 |
| Line contains a tab character. | 747 |
| Line contains a tab character. | 749 |
| Missing a Javadoc comment. | 749 |
| Parameter arg0 should be final. | 749 |
| Line contains a tab character. | 750 |
| Line contains a tab character. | 751 |
| Line contains a tab character. | 753 |
| Method 'valueUnbound' is not designed for extension - needs to be abstract, final or empty. | 753 |
| Missing a Javadoc comment. | 753 |
| Parameter arg0 should be final. | 753 |
| Line contains a tab character. | 754 |
| Line contains a tab character. | 755 |
| Line contains a tab character. | 756 |
| Line contains a tab character. | 757 |
| Line contains a tab character. | 758 |
| Line contains a tab character. | 759 |
| Line contains a tab character. | 760 |
