Namespace: |
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Type: |
anonymous complexType |
Content: |
complex, 20 attributes, 4 elements |
Defined: |
globally in cmlreact.xsd; see XML source |
Includes: |
definitions of 4 elements |
Used: |
at 2 locations |
XML Representation Summary |
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</peak> |
<xsd:element id="el.peak" name="peak"> <xsd:annotation> <xsd:documentation> <h:div class="summary">A peak; annotated by human or machine.</h:div> <h:div class="description"> <h:p> A <h:tt>peak</h:tt> can describe: <h:ul> <h:li> A single point in a spectrum. Usually a maximum but could be a shoulder, inflexion or indeed any point of interest. </h:li> <h:li> A continuous range of values within a spectrum, defined by maximum and minimum values on either/both axes </h:li> </h:ul> </h:p> </h:div> <h:div class="description"> The units should always be given. (The raw spectral data may unfortunately use different units and no assumptions should be made). </h:div> <h:div class="example" href="peak1.xml"/> </xsd:documentation> </xsd:annotation> <xsd:complexType> <xsd:sequence> <xsd:annotation> <xsd:documentation> <h:div class="summary"> Allows <h:i>inter alia</h:i> the provenance of the peak assignment to be recorde. </h:div> </xsd:documentation> </xsd:annotation> </xsd:element> <xsd:choice maxOccurs="unbounded" minOccurs="0"> </xsd:choice> </xsd:sequence> </xsd:complexType> </xsd:element> |
Type: |
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Use: |
optional |
Defined: |
<xsd:attribute id="att.convention" name="convention" type="namespaceRefType"> <xsd:annotation> <xsd:documentation> <h:div class="summary">A reference to a convention.</h:div> <h:div class="description"> There is no controlled vocabulary for conventions, but the author must ensure that the semantics are openly available and that there are mechanisms for implementation. The convention is inherited by all the subelements, so that a convention for <h:tt>molecule</h:tt> would by default extend to its <h:tt>bond</h:tt> and <h:tt>atom</h:tt> children. This can be overwritten if necessary by an explicit <h:tt>convention</h:tt> . <h:p> It may be useful to create conventions with namespaces (e.g. <h:tt>iupac:name</h:tt> ). Use of <h:tt>convention</h:tt> will normally require non-STMML semantics, and should be used with caution. We would expect that conventions prefixed with "ISO" would be useful, such as ISO8601 for dateTimes. </h:p> <h:p> There is no default, but the conventions of STMML or the related language (e.g. CML) will be assumed. </h:p> </h:div> <h:div class="example" href="convGroup1.xml" id="ex"/> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
|
Use: |
optional |
Defined: |
<xsd:attribute id="att.dictRef" name="dictRef" type="namespaceRefType"> <xsd:annotation> <xsd:documentation> <h:div class="summary">A reference to a dictionary entry.</h:div> <h:div class="description"> Elements in data instances such as _scalar_ may have a <h:tt>dictRef</h:tt> attribute to point to an entry in a dictionary. To avoid excessive use of (mutable) filenames and URIs we recommend a namespace prefix, mapped to a namespace URI in the normal manner. In this case, of course, the namespace URI must point to a real XML document containing _entry_ elements and validated against STMML Schema. <h:p> Where there is concern about the dictionary becoming separated from the document the dictionary entries can be physically included as part of the data instance and the normal XPointer addressing mechanism can be used. </h:p> <h:p> This attribute can also be used on _dictionary_ elements to define the namespace prefix </h:p> </h:div> <h:div class="example" href="dictRefGroup1.xml"/> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
|
Use: |
optional |
Defined: |
Type: |
xsd:string, predefined |
Use: |
optional |
Defined: |
<xsd:attribute id="att.integral" name="integral" type="xsd:string"> <xsd:annotation> <xsd:documentation> <h:div class="summary">Area under a peak.</h:div> <h:div class="description"> Unfortunately units are usually arbitrary and not related to the x- and y- axis units, and in this case _peakUnits_ should be use. </h:div> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
xsd:float, predefined |
Use: |
optional |
Defined: |
<xsd:attribute id="att.peakHeight" name="peakHeight" type="xsd:float"> <xsd:annotation> <xsd:documentation> <h:div class="summary">Height of a peak.</h:div> <h:div class="description"> For 1-dimensional data (e.g. y vs x) hould use the same units as the appropriate axis (e.g. y). </h:div> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
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Use: |
optional |
Defined: |
Derivation: |
by union |
Derivation: |
restriction of xsd:string |
Derivation: |
restriction of namespaceRefType |
<xsd:attribute id="att.peakMultiplicity" name="peakMultiplicity"> <xsd:annotation> <xsd:documentation> <h:div class="summary">Multiplicity of a peak.</h:div> <h:div class="description">Uses a semi-controlled vocabulary.</h:div> </xsd:documentation> </xsd:annotation> <xsd:simpleType> <xsd:union> <xsd:simpleType> <xsd:restriction base="xsd:string"> <xsd:enumeration value="singlet"> <xsd:annotation> <xsd:documentation> <h:div class="summary">A single maximum within the peak rang.</h:div> </xsd:documentation> </xsd:annotation> </xsd:enumeration> <xsd:enumeration value="doublet"> <xsd:annotation> <xsd:documentation> <h:div class="summary"> Two maxima (not necessarily equal) within the peak rang. </h:div> </xsd:documentation> </xsd:annotation> </xsd:enumeration> <xsd:enumeration value="triplet"> <xsd:annotation> <xsd:documentation> <h:div class="summary"> Three maxima (not necessarily equal) within the peak rang. </h:div> </xsd:documentation> </xsd:annotation> </xsd:enumeration> <xsd:enumeration value="quartet"> <xsd:annotation> <xsd:documentation> <h:div class="summary"> Four maxima (not necessarily equal) within the peak rang. </h:div> </xsd:documentation> </xsd:annotation> </xsd:enumeration> <xsd:enumeration value="quintet"> <xsd:annotation> <xsd:documentation> <h:div class="summary"> Five maxima (not necessarily equal) within the peak rang. </h:div> </xsd:documentation> </xsd:annotation> </xsd:enumeration> <xsd:enumeration value="sextuplet"> <xsd:annotation> <xsd:documentation> <h:div class="summary"> Six maxima (not necessarily equal) within the peak rang. </h:div> </xsd:documentation> </xsd:annotation> </xsd:enumeration> <xsd:enumeration value="multiplet"> <xsd:annotation> <xsd:documentation> <h:div class="summary"> Several maxima (not necessarily equal) within the peak rang. </h:div> </xsd:documentation> </xsd:annotation> </xsd:enumeration> </xsd:restriction> </xsd:simpleType> <xsd:simpleType> <xsd:annotation> <xsd:documentation> <h:div>User contributed vocabulary of type foo:ba.</h:div> </xsd:documentation> </xsd:annotation> </xsd:restriction> </xsd:simpleType> </xsd:union> </xsd:simpleType> </xsd:attribute> |
Type: |
|
Use: |
optional |
Defined: |
Derivation: |
by union |
Derivation: |
restriction of xsd:string |
Derivation: |
restriction of namespaceRefType |
<xsd:attribute id="att.peakShape" name="peakShape"> <xsd:annotation> <xsd:documentation> <h:div class="summary">Shape of a peak.</h:div> <h:div class="description"> Semi-controlled vocabulary such as broad or sharp. </h:div> </xsd:documentation> </xsd:annotation> <xsd:simpleType> <xsd:union> <xsd:simpleType> <xsd:restriction base="xsd:string"> <xsd:enumeration value="sharp"> <xsd:annotation> <xsd:documentation> <h:div class="summary">A sharp peak.</h:div> </xsd:documentation> </xsd:annotation> </xsd:enumeration> <xsd:enumeration value="broad"> <xsd:annotation> <xsd:documentation> <h:div class="summary">A broad peak.</h:div> </xsd:documentation> </xsd:annotation> </xsd:enumeration> <xsd:enumeration value="shoulder"> <xsd:annotation> <xsd:documentation> <h:div class="summary"> A brodening of a peak suggesting the presence of a smaller incompletely resolved component. </h:div> </xsd:documentation> </xsd:annotation> </xsd:enumeration> </xsd:restriction> </xsd:simpleType> <xsd:simpleType> <xsd:annotation> <xsd:documentation> <h:div class="summary">User contributed vocabulary of type foo:bar.</h:div> </xsd:documentation> </xsd:annotation> </xsd:restriction> </xsd:simpleType> </xsd:union> </xsd:simpleType> </xsd:attribute> |
Type: |
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Use: |
optional |
Defined: |
<xsd:attribute id="att.peakUnits" name="peakUnits" type="unitsType"> <xsd:annotation> <xsd:documentation> <h:div class="summary">Units for a peak or peak integral.</h:div> <h:div class="description"> For 2-dimensional spectra the units represent the observation. For an integral they are usually arbitrary and not related to the x- and y- axis units. Thus NMR spectra may use hydrogen count as the units for the peak area. </h:div> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
|
Use: |
optional |
Defined: |
<xsd:attribute id="att.ref" name="ref" type="refType"> <xsd:annotation> <xsd:documentation> <h:div class="summary">A reference to an element of given type.</h:div> <h:div class="description"> <h:tt>ref</h:tt> modifies an element into a reference to an existing element of that type within the document. This is similar to a pointer and it can be thought of a strongly typed hyperlink. It may also be used for "subclassing" or "overriding" elements. <br xmlns=""/> When referring to an element most of the "data" such as attribute values and element content will be on the full instantiated element. Therefore ref (and possibly id) will normally be the only attributes on the pointing element. However there may be some attributes (title, count, etc.) which have useful semantics, but these are element-specific </h:div> <h:div class="example" href="refGroup1.xml"/> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
xsd:string, predefined |
Use: |
optional |
Defined: |
<xsd:attribute id="att.title" name="title" type="xsd:string"> <xsd:annotation> <xsd:documentation> <h:div class="summary">A title on an element.</h:div> <h:div class="description">No controlled value.</h:div> <h:div class="example" href="title1.xml"/> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
xsd:float, predefined |
Use: |
optional |
Defined: |
<xsd:attribute id="att.xMax" name="xMax" type="xsd:float"> <xsd:annotation> <xsd:documentation> <h:div class="summary">Maximum yValue.</h:div> <h:div class="description"> Annotates x-axis data with a maximum value. This need not be algorithmically deducible from the data and is typically used for the extent of a _peak_ or _peakGroup_. It uses xUnits or the same units as the data. There may or may not be a _xMin_ attribute but if so xMax should be greater than or equals to it. </h:div> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
xsd:float, predefined |
Use: |
optional |
Defined: |
<xsd:attribute id="att.xMin" name="xMin" type="xsd:float"> <xsd:annotation> <xsd:documentation> <h:div class="summary">Minimum yValue.</h:div> <h:div class="description"> Annotates x-axis data with a minimum value. This need not be algorithmically deducible from the data and is typically used for the extent of a _peak_ or _peakGroup_. It uses xUnits or the same units as the data. There may or may not be a _xMax_ attribute but if so xMin should be less than or equals to it. </h:div> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
|
Use: |
optional |
Defined: |
<xsd:attribute id="att.xUnits" name="xUnits" type="unitsType"> <xsd:annotation> <xsd:documentation> <h:div class="summary">Units for x axis.</h:div> <h:div class="description"> All x-axis data must have unambiguous units. Ideally the data and _xMin_ or _xValue_ should share the same units but different xUnits can be used as long as it is clear.. </h:div> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
xsd:float, predefined |
Use: |
optional |
Defined: |
<xsd:attribute id="att.xValue" name="xValue" type="xsd:float"> <xsd:annotation> <xsd:documentation> <h:div class="summary">Value along an x axis.</h:div> <h:div class="description"> Annotates x-axis data with a value. It is typically used for the location of a _peak_ or _peakGroup_. It uses xUnits or the same units as the data. </h:div> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
xsd:float, predefined |
Use: |
optional |
Defined: |
<xsd:attribute id="att.xWidth" name="xWidth" type="xsd:float"> <xsd:annotation> <xsd:documentation> <h:div class="summary">An unsigned interval along an x axis.</h:div> <h:div class="description"> It is typically used for the width of a _peak_ or _peakGroup_ but could be used for any range. It uses xUnits or the same units as the data. </h:div> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
xsd:float, predefined |
Use: |
optional |
Defined: |
<xsd:attribute id="att.yMax" name="yMax" type="xsd:float"> <xsd:annotation> <xsd:documentation> <h:div class="summary">Maximum yValue.</h:div> <h:div class="description"> Annotates y-axis data with a maximum value. This need not be algorithmically deducible from the data and is typically used for the extent of a _peak_ or _peakGroup_. It uses yUnits or the same units as the data. There may or may not be a _yMin_ attribute but if so yMax should be greater than or equals to it. </h:div> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
xsd:float, predefined |
Use: |
optional |
Defined: |
<xsd:attribute id="att.yMin" name="yMin" type="xsd:float"> <xsd:annotation> <xsd:documentation> <h:div class="summary">Minimum yValue.</h:div> <h:div class="description"> Annotates y-axis data with a minimum value. This need not be algorithmically deducible from the data and is typically used for the extent of a _peak_ or _peakGroup_. It uses yUnits or the same units as the data. There may or may not be a _yMax_ attribute but if so yMin should be less than or equal to it. </h:div> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
|
Use: |
optional |
Defined: |
<xsd:attribute id="att.yUnits" name="yUnits" type="unitsType"> <xsd:annotation> <xsd:documentation> <h:div class="summary">Units for y axis.</h:div> <h:div class="description"> All y-axis data must have unambiguous units. Ideally the data and _yMin_ or _yValue_ should share the same units but different yUnits can be used as long as it is clear. </h:div> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
xsd:float, predefined |
Use: |
optional |
Defined: |
<xsd:attribute id="att.yValue" name="yValue" type="xsd:float"> <xsd:annotation> <xsd:documentation> <h:div class="summary">Value along a y axis.</h:div> <h:div class="description"> Annotates y-axis data with a value. It is typically used for the location of a _peak_ or _peakGroup_. It uses yUnits or the same units as the data. </h:div> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
xsd:float, predefined |
Use: |
optional |
Defined: |
<xsd:attribute id="att.yWidth" name="yWidth" type="xsd:float"> <xsd:annotation> <xsd:documentation> <h:div class="summary">An unsigned interval along a y axis.</h:div> <h:div class="description"> It is typically used for the width of a _peak_ or _peakGroup_ but could be used for any range. It uses yUnits or the same units as the data. </h:div> </xsd:documentation> </xsd:annotation> </xsd:attribute> |
Type: |
anonymous complexType, complex content |
Defined: |
<xsd:element minOccurs="0" ref="metadataList"> <xsd:annotation> <xsd:documentation> <h:div class="summary"> Allows <h:i>inter alia</h:i> the provenance of the peak assignment to be recorde. </h:div> </xsd:documentation> </xsd:annotation> </xsd:element> |
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