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package uk.ac.ebi.intenz.mapper; |
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import java.sql.Connection; |
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import java.sql.PreparedStatement; |
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import java.sql.ResultSet; |
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import java.sql.SQLException; |
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import java.util.Date; |
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import java.util.List; |
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import java.util.Vector; |
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import uk.ac.ebi.intenz.domain.constants.EventConstant; |
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import uk.ac.ebi.intenz.domain.constants.Status; |
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import uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry; |
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import uk.ac.ebi.intenz.domain.exceptions.DomainException; |
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import uk.ac.ebi.intenz.domain.history.FutureEvent; |
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import uk.ac.ebi.intenz.domain.history.HistoryGraph; |
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import uk.ac.ebi.intenz.domain.history.HistoryNode; |
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import uk.ac.ebi.intenz.domain.history.Timeout; |
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public class EnzymeFutureMapper extends EnzymeHistoryMapper { |
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private static final String COLUMNS = "f.group_id, f.event_id, f.before_id, f.after_id, f.event_year, " + |
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"f.event_note, f.event_class, f.status, f.timeout_id, " + |
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"t.enzyme_id, t.start_date, t.due_date"; |
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public EnzymeFutureMapper() { |
| 33 | 0 | super(); |
| 34 | 0 | } |
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private String findStatement() { |
| 37 | 0 | return "SELECT " + COLUMNS + |
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" FROM future_events f, timeouts t" + |
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" WHERE (before_id = ? OR after_id = ?) AND f.timeout_id = t.timeout_id"; |
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} |
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@Override |
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public HistoryGraph find(EnzymeEntry enzymeEntry, Connection con) |
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throws SQLException, DomainException { |
| 45 | 0 | if (enzymeEntry == null) throw new NullPointerException(); |
| 46 | 0 | HistoryNode currentNode = findNode(enzymeEntry, true, con); |
| 47 | 0 | if (currentNode == null) |
| 48 | 0 | return null; |
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| 50 | 0 | return new HistoryGraph(currentNode); |
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} |
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public boolean futureEventExists(Long enzymeId, Connection con) throws SQLException { |
| 62 | 0 | PreparedStatement findStatement = null; |
| 63 | 0 | ResultSet rs = null; |
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try { |
| 65 | 0 | findStatement = con.prepareStatement(findStatement()); |
| 66 | 0 | findStatement.setLong(1, enzymeId.longValue()); |
| 67 | 0 | findStatement.setLong(2, enzymeId.longValue()); |
| 68 | 0 | rs = findStatement.executeQuery(); |
| 69 | 0 | if (rs.next()) { |
| 70 | 0 | return true; |
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} |
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} finally { |
| 73 | 0 | if (rs != null) rs.close(); |
| 74 | 0 | findStatement.close(); |
| 75 | 0 | } |
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| 77 | 0 | return false; |
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} |
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private HistoryNode findNode(EnzymeEntry currentEntry, boolean isRoot, |
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Connection con) |
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throws SQLException, DomainException { |
| 86 | 0 | HistoryNode historyNode = new HistoryNode(); |
| 87 | 0 | historyNode.setEnzymeEntry(currentEntry); |
| 88 | 0 | historyNode.setRoot(isRoot); |
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| 91 | 0 | historyNode.setHistoryLine(currentEntry.getHistory().getRootNode().getHistoryLine()); |
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| 93 | 0 | if (visitedNodes.containsKey(currentEntry.getId())) { |
| 94 | 0 | return (HistoryNode) visitedNodes.get(currentEntry.getId()); |
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} |
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| 97 | 0 | visitedNodes.put(currentEntry.getId(), historyNode); |
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| 100 | 0 | List futureEvents = findFutureEvents(historyNode, con); |
| 101 | 0 | historyNode.setEdges(futureEvents); |
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| 103 | 0 | return historyNode; |
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} |
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private List findFutureEvents(HistoryNode currentNode, Connection con) |
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throws SQLException, DomainException { |
| 108 | 0 | PreparedStatement findStatement = null; |
| 109 | 0 | ResultSet rs = null; |
| 110 | 0 | Vector result = new Vector(); |
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try { |
| 113 | 0 | findStatement = con.prepareStatement(findStatement()); |
| 114 | 0 | findStatement.setLong(1, currentNode.getEnzymeEntry().getId().longValue()); |
| 115 | 0 | findStatement.setLong(2, currentNode.getEnzymeEntry().getId().longValue()); |
| 116 | 0 | rs = findStatement.executeQuery(); |
| 117 | 0 | while (rs.next()) { |
| 118 | 0 | result.addElement(doLoad(rs, currentNode, con)); |
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} |
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} finally { |
| 121 | 0 | if (rs != null) rs.close(); |
| 122 | 0 | if (findStatement != null) findStatement.close(); |
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} |
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| 125 | 0 | return result; |
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} |
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private FutureEvent doLoad(ResultSet rs, HistoryNode currentNode, |
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Connection con) |
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throws SQLException, DomainException { |
| 138 | 0 | long groupId = 0; |
| 139 | 0 | long eventId = 0; |
| 140 | 0 | int beforeId = 0; |
| 141 | 0 | int afterId = 0; |
| 142 | 0 | int enzymeId = 0; |
| 143 | 0 | Date eventYear = new Date(); |
| 144 | 0 | Date startDate = null; |
| 145 | 0 | Date dueDate = null; |
| 146 | 0 | String eventNote = ""; |
| 147 | 0 | String eventClass = ""; |
| 148 | 0 | String status = ""; |
| 149 | 0 | int timeoutId = 0; |
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| 151 | 0 | if (rs.getInt(1) > 0) groupId = rs.getLong(1); |
| 152 | 0 | if (rs.getInt(2) > 0) eventId = rs.getLong(2); |
| 153 | 0 | if (rs.getInt(3) > 0) beforeId = rs.getInt(3); |
| 154 | 0 | if (rs.getInt(4) > 0) afterId = rs.getInt(4); |
| 155 | 0 | if (rs.getDate(5) != null) eventYear = rs.getDate(5); |
| 156 | 0 | if (rs.getString(6) != null) eventNote = rs.getString(6); |
| 157 | 0 | if (rs.getString(7) != null) eventClass = rs.getString(7); |
| 158 | 0 | if (rs.getString(8) != null) status = rs.getString(8); |
| 159 | 0 | if (rs.getInt(9) > 0) timeoutId = rs.getInt(9); |
| 160 | 0 | if (rs.getInt(10) > 0) enzymeId = rs.getInt(10); |
| 161 | 0 | if (rs.getDate(11) != null) startDate = rs.getDate(11); |
| 162 | 0 | if (rs.getDate(12) != null) dueDate = rs.getDate(12); |
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| 165 | 0 | EnzymeEntryMapper enzymeEntryMapper = new EnzymeEntryMapper(); |
| 166 | 0 | HistoryNode beforeNode = null, afterNode = null; |
| 167 | 0 | if (beforeId > 0) { |
| 168 | 0 | if (beforeId != currentNode.getEnzymeEntry().getId().longValue()) { |
| 169 | 0 | EnzymeEntry ghostEntry = enzymeEntryMapper.findGhostById(beforeId, con); |
| 170 | 0 | beforeNode = findNode(ghostEntry, false, con); |
| 171 | 0 | afterNode = currentNode; |
| 172 | 0 | } else { |
| 173 | 0 | beforeNode = currentNode; |
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} |
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} |
| 176 | 0 | if (afterId > 0) { |
| 177 | 0 | if (afterId != currentNode.getEnzymeEntry().getId().longValue()) { |
| 178 | 0 | EnzymeEntry ghostEntry = enzymeEntryMapper.findGhostById(afterId, con); |
| 179 | 0 | beforeNode = currentNode; |
| 180 | 0 | afterNode = findNode(ghostEntry, false, con); |
| 181 | 0 | } else { |
| 182 | 0 | afterNode = currentNode; |
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} |
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} |
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| 186 | 0 | Timeout timeout = new Timeout(); |
| 187 | 0 | timeout.setEnzymeId(enzymeId); |
| 188 | 0 | timeout.setStartDate(startDate); |
| 189 | 0 | timeout.setDueDate(dueDate); |
| 190 | 0 | timeout.setTimeoutId(timeoutId); |
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| 192 | 0 | FutureEvent futureEvent = new FutureEvent(); |
| 193 | 0 | futureEvent.setGroupId(new Long(groupId)); |
| 194 | 0 | futureEvent.setEventId(new Long(eventId)); |
| 195 | 0 | futureEvent.setBeforeNode(beforeNode); |
| 196 | 0 | futureEvent.setAfterNode(afterNode); |
| 197 | 0 | futureEvent.setDate(eventYear); |
| 198 | 0 | futureEvent.setNote(eventNote); |
| 199 | 0 | futureEvent.setEventClass(EventConstant.valueOf(eventClass)); |
| 200 | 0 | futureEvent.setStatus(Status.fromCode(status)); |
| 201 | 0 | futureEvent.setTimeout(timeout); |
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| 203 | 0 | enzymeEntryMapper.close(); |
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| 205 | 0 | return futureEvent; |
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} |
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} |