uk.ac.ebi.intenz.tools.export

Class JsonExporter

java.lang.Object

uk.ac.ebi.intenz.tools.export.JsonExporter

All Implemented Interfaces:

IntenzExporter

public class JsonExporter
extends Object
implements IntenzExporter

Utility class to export enzyme entries - but also classes, subclasses and subsubclasses - as JSON.

Since:

1.3.18

Author:

rafa

Constructor Summary

Constructors

Constructor and Description
JsonExporter()

Method Summary

Methods

Modifier and Type	Method and Description
void	export(Collection<uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry> enzymes, OutputStream os) Exports a collection of enzymes.
void	export(uk.ac.ebi.intenz.domain.enzyme.EnzymeClass ec, OutputStream os) Exports an EC class as JSON.
void	export(uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry enzyme, OutputStream os) Exports just one enzyme.
void	export(uk.ac.ebi.intenz.domain.enzyme.EnzymeSubclass esc, OutputStream os) Exports an EC subclass as JSON.
void	export(uk.ac.ebi.intenz.domain.enzyme.EnzymeSubSubclass essc, OutputStream os) Exports an EC sub-subclass as JSON, including only its active EC numbers (not deleted, not transferred).
void	export(uk.ac.ebi.intenz.domain.enzyme.EnzymeSubSubclass essc, OutputStream os, boolean onlyActive) Exports an EC sub-subclass as JSON.
void	export(List<uk.ac.ebi.intenz.domain.enzyme.EnzymeClass> ecs, OutputStream os) Turns a list of EC classes into a JSON array.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

JsonExporter

public JsonExporter()

Method Detail

export

public void export(Collection<uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry> enzymes,
          OutputStream os)
            throws IOException

Description copied from interface: IntenzExporter

Exports a collection of enzymes.

Specified by:

export in interface IntenzExporter

Parameters:

enzymes - the enzymes to export.

os - the output stream to write the export to.

Throws:

IOException

export

public void export(uk.ac.ebi.intenz.domain.enzyme.EnzymeEntry enzyme,
          OutputStream os)
            throws IOException

Description copied from interface: IntenzExporter

Exports just one enzyme.

Specified by:

export in interface IntenzExporter

Parameters:

enzyme - the enzyme to export.

os - the output stream to write the entry to.

Throws:

IOException

export

public void export(uk.ac.ebi.intenz.domain.enzyme.EnzymeSubSubclass essc,
          OutputStream os)

Exports an EC sub-subclass as JSON, including only its active EC numbers (not deleted, not transferred).

Parameters:

essc - The EC sub-subclass.

os - The output stream to write to.

export

public void export(uk.ac.ebi.intenz.domain.enzyme.EnzymeSubSubclass essc,
          OutputStream os,
          boolean onlyActive)

Exports an EC sub-subclass as JSON.

Parameters:

essc - The EC sub-subclass.

os - The output stram to write to.

onlyActive - Do we want to export only the active (not deleted, not transferred) EC numbers?

export

public void export(uk.ac.ebi.intenz.domain.enzyme.EnzymeSubclass esc,
          OutputStream os)

Exports an EC subclass as JSON.

Parameters:

esc - The EC subclass.

os - The output stream to write to.

export

public void export(uk.ac.ebi.intenz.domain.enzyme.EnzymeClass ec,
          OutputStream os)

Exports an EC class as JSON.

Parameters:

ec - The EC class.

os - The output stream to write to.

export

public void export(List<uk.ac.ebi.intenz.domain.enzyme.EnzymeClass> ecs,
          OutputStream os)

Turns a list of EC classes into a JSON array.

Parameters:

ecs - The EC classes.

os - The output stream to write to.