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EnzymeClassHelper - Class in uk.ac.ebi.intenz.tools.release.helper

This class ...

EnzymeEntryHelper - Class in uk.ac.ebi.intenz.tools.release.helper

Deprecated.

EnzymeEntryHelper() - Constructor for class uk.ac.ebi.intenz.tools.release.helper.EnzymeEntryHelper

Deprecated.

EnzymeReferenceHelper - Class in uk.ac.ebi.intenz.tools.release.helper

EnzymeReferenceHelper used to display the XML text version.

EnzymeReferenceHelper() - Constructor for class uk.ac.ebi.intenz.tools.release.helper.EnzymeReferenceHelper

EnzymeSubclassHelper - Class in uk.ac.ebi.intenz.tools.release.helper

This class ...

EnzymeSubSubclassHelper - Class in uk.ac.ebi.intenz.tools.release.helper

This class ...

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ID2EC - Class in uk.ac.ebi.intenz.tools.release

This class is used to populate the table id2ec.

ID2EC() - Constructor for class uk.ac.ebi.intenz.tools.release.ID2EC

IntEnzText - Class in uk.ac.ebi.intenz.tools.release

This class creates populates the free text search table (intenz_text).

IntEnzText() - Constructor for class uk.ac.ebi.intenz.tools.release.IntEnzText

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main(String[]) - Static method in class uk.ac.ebi.intenz.tools.release.ID2EC

Re-generates the ID2EC table in the database, which maps EC number of public entries to their internal IDs.

main(String[]) - Static method in class uk.ac.ebi.intenz.tools.release.IntEnzText

Refreshes the intenz_text table.
The first and only parameter is the database instance to be updated.

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referenceToIntEnzTextXML(Reference, int, SpecialCharacters) - Static method in class uk.ac.ebi.intenz.tools.release.helper.EnzymeReferenceHelper

Used to transform the reference object into the IntEnz text XML used in the search engine.

removeFormatting(String) - Static method in class uk.ac.ebi.intenz.tools.release.helper.EnzymeEntryHelper

Deprecated.

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toXML(EnzymeClass, SpecialCharacters) - Static method in class uk.ac.ebi.intenz.tools.release.helper.EnzymeClassHelper

toXML(EnzymeEntry, SpecialCharacters, EnzymeViewConstant, boolean) - Static method in class uk.ac.ebi.intenz.tools.release.helper.EnzymeEntryHelper

Deprecated.

toXML(EnzymeSubclass, SpecialCharacters) - Static method in class uk.ac.ebi.intenz.tools.release.helper.EnzymeSubclassHelper

toXML(EnzymeSubSubclass, SpecialCharacters) - Static method in class uk.ac.ebi.intenz.tools.release.helper.EnzymeSubSubclassHelper

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uk.ac.ebi.intenz.tools.release - package uk.ac.ebi.intenz.tools.release

uk.ac.ebi.intenz.tools.release.helper - package uk.ac.ebi.intenz.tools.release.helper

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