Surefire Report

Summary

Tests	Errors	Failures	Skipped	Success Rate	Time
114	0	0	0	100%	3.003

Note: failures are anticipated and checked for with assertions while errors are unanticipated.

Package List

[Summary] [Package List] [Test Cases]

Package	Tests	Success Rate	Time
uk.ac.ebi.biobabel.util	39	100%	0.709
uk.ac.ebi.biobabel.util.collections	15	100%	1.862
uk.ac.ebi.biobabel.util.xml	4	100%	0.095
uk.ac.ebi.biobabel.validator	56	100%	0.337

Note: package statistics are not computed recursively, they only sum up all of its testsuites numbers.

uk.ac.ebi.biobabel.util

Class	Tests	Success Rate	Time
AccessionNumberComparatorTest	3	100%	0.06
TestChemicalDataUtil	5	100%	0.575
TestStringUtil	21	100%	0.057
TestWebUtil	10	100%	0.017

uk.ac.ebi.biobabel.util.collections

Class	Tests	Success Rate	Time
ChemicalElementSymbolComparatorTest	1	100%	0.005
ChemicalNameComparatorTest	2	100%	1.856
CollectionMapTest	4	100%	0
ConfigurableComparatorTest	2	100%	0
ListReaderTest	1	100%	0
OperatorSetTest	5	100%	0.001

uk.ac.ebi.biobabel.util.xml

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	XPathSAXHandlerTest	4	0	0	0	100%	0.095

uk.ac.ebi.biobabel.validator

Class	Tests	Success Rate	Time
SyntaxValidatorTest	8	100%	0.066
TestChemicalDataValidator	4	100%	0.003
TestDbIdentifierValidator	44	100%	0.268

Test Cases

[Summary] [Package List] [Test Cases]

AccessionNumberComparatorTest

	testCompareDifferentPrefixes	0.015
	testCompareDifferentCasePrefixes	0
	testCompare	0.001

ChemicalElementSymbolComparatorTest

testCompare

0.001

ChemicalNameComparatorTest

	testCompare	0.014
	testSort	1.819

CollectionMapTest

	testSet	0
	testAdd	0
	testReverse	0
	testReverseSet	0

ConfigurableComparatorTest

	testCompare	0
	testConfigurableComparatorString	0

ListReaderTest

testReadStringList

OperatorSetTest

	testRemoveObject	0
	testToString	0
	testToStringProperty	0
	testBuilder	0
	testParse	0

TestChemicalDataUtil

	testCountAtomsNoTextSearches	0.216
	testIsPossibleFormulaSearch	0.034
	testCountAtomsTextSearches	0.309
	testCountAtomsCoefficients	0.014
	testGetCmlFormula	0

TestStringUtil

	testIsNullOrEmptyStringNull	0
	testIsNullOrEmptyStringEmpty	0
	testIsNullOrEmptyStringNotEmpty	0.006
	testStringReverseCasingComparatorClassCastException	0
	testStringReverseCasingComparatorNullPointerException	0.003
	testStringReverseCasingComparatorNoCasingTest	0.005
	testStringReverseCasingComparatorCasingTest	0
	testIsIntegerIsNull	0
	testIsIntegerDecimalDigits	0.001
	testIsIntegerCharacters	0.007
	testIsIntegerDigits	0
	testIsUpperCaseIsNull	0
	testIsUpperCaseTrue	0.004
	testIsUpperCaseFalseSpace	0
	testToArrayIsNull	0.011
	testToArrayEmpty	0
	testToArrayZeroChunks	0
	testToArrayOver	0
	testToArrayUnder	0
	testToArrayOverWithRemainder	0.005
	testGetMatchingBrackets	0

TestWebUtil

	testEscapeHTMLTagStringIsNull	0
	testEscapeHTMLTagStringIsEmpty	0
	testEscapeHTMLTagStringHasEmptySpace	0.002
	testEscapeHTMLTagStringAllCharacters	0.001
	testEscapeHTMLTagStringAmpersandFirst	0.004
	testEscapeHTMLTagIgnoreUnicodeStringWithUnicode	0
	testEscapeHTMLTagIgnoreUnicodeStringIsNull	0.008
	testEscapeHTMLTagIgnoreUnicodeStringIsEmpty	0
	testEscapeHTMLTagIgnoreUnicodeStringCloseUnicode	0
	testAddInvisibleHtmlSpaces	0.001

XPathSAXHandlerTest

	test01	0.059
	test02	0.009
	test02wrongXpath	0.013
	test03	0.013

SyntaxValidatorTest

	testValidateNoBrackets	0.002
	testValidateGoodBrackets	0
	testValidateGoodDifferentBrackets	0.004
	testValidateOverlappingBrackets	0.001
	testValidateNoOpeningBracket	0
	testValidateNoClosingBracket	0.016
	testValidateOverlappingMultipleBrackets	0
	testInvalidPunctuationEnd	0.002

TestChemicalDataValidator

	testIsValidChemicalFormulaStringNull	0
	testIsValidChemicalFormulaStringEmpty	0.001
	testIsValidChemicalFormulaStringSpace	0.001
	testIsValidChemicalFormulaWithInvalidFormula	0.001

TestDbIdentifierValidator

	testValidatePatentId	0.005
	testValidateCASStringNull	0.009
	testValidateCASStringEmpty	0
	testValidateCASStringTrue	0.001
	testValidateCASStringFalse	0
	testValidateGMELINStringTrue	0
	testValidateGMELINStringFalse	0.003
	testValidateBEILSTEINStringTrue	0.001
	testValidateBEILSTEINStringFalse	0.007
	testValidateMOLBASEStringTrue	0
	testValidateMOLBASEStringFalse	0.001
	testValidateMSDChemStringTrue	0.009
	testValidateMacieId	0.014
	testValidateMSDChemStringFalse	0.001
	testValidateMSDChemExtendedStringTrue	0.005
	testValidateMSDChemExtendedStringFalse	0.005
	testValidateCOMEStringTrue	0.003
	testValidateCOMEStringFalse	0.005
	testValidateKEGGCompoundStringTrue	0
	testValidateKEGGCompoundStringFalse	0.001
	testValidateKEGGGlycanStringTrue	0
	testValidateKEGGGlycanStringFalse	0.001
	testValidatePDBStringTrue	0.003
	testValidatePDBStringFalse	0.003
	testValidateECStringTrue	0.013
	testValidateECStringFalse	0.003
	testValidateChebiStringTrue	0.004
	testValidateChebiStringFalse	0.005
	testValidateUmbbdStringTrue	0.005
	testValidateUmbddStringFalse	0.003
	testValidateResidStringTrue	0.007
	testValidateResidStringFalse	0.002
	testValidateWebElementsIdStringTrue	0.009
	testValidateWebElementsIdStringFalse	0.012
	testValidateLipidMapsClassIdStringTrue	0.006
	testValidateLipidMapsClassIdStringFalse	0.003
	testValidateLipidMapsInstanceIdStringTrue	0.014
	testValidateLipidMapsInstanceIdStringFalse	0.017
	testValidateKeggReactionId	0.01
	testValidateDrugBankId	0.004
	testValidateUniPathwayId	0.01
	testValidateMetaCycRxnId	0.027
	testValidateReactomeId	0.01
	testValidateDrugId	0.018

Steinbeck group @ SF

Parent Project

Project Documentation