compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

provided

The following is a list of provided dependencies for this project. These dependencies are required to compile the application, but should be provided by default when using the library:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

Dependency Tree

• uk.ac.ebi.intenz.webapp:intenz-ws:war:2.0.5

  intenz-ws
  Description: IntEnz web services. URL: http://intenz.sf.net/webapp/intenz-ws Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.intenz:intenz-core:jar:4.3.3 (compile)

    IntEnz core module
    Description: IntEnz - Core package URL: http://intenz.sf.net/intenz-core Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.rhea:rhea-domain:jar:1.8.0 (compile)

      Domain model
      Description: The domain model of Rhea. URL: http://rhea-ebi.sf.net/rhea-domain Project License: Creative Commons Attribution (CC BY) 3.0

      • uk.ac.ebi.xchars:xchars-taglib:jar:1.0.2 (compile)

        XChars tag library
        Description: Tag library to make special characters transformations from JSPs. URL: http://intenz.sf.net/xchars/taglib Project License: No license is defined for this project.

      • uk.ac.ebi.biobabel:biobabel-citations:jar:2.0.1 (compile)

        Citations utilities
        Description: A module to handle citations from CiteXplore. URL: http://intenz.sf.net/biobabel/biobabel-citations Project License: No license is defined for this project.

        • com.sun.xml.ws:jaxws-tools:jar:2.1.4 (compile)

          JAX-WS (JSR-224) Reference Implementation Tools
          Description: Open source Reference Implementation of JSR-224: Java API for XML Web Services URL: https://jax-ws.dev.java.net// Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0GPLv2 with classpath exception

          • com.sun.xml.ws:jaxws-rt:jar:2.1.4 (compile)

            JAX-WS (JSR-224) Reference Implementation
            Description: Open source Reference Implementation of JSR-224: Java API for XML Web Services URL: https://jax-ws.dev.java.net// Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0GPLv2 with classpath exception

            • com.sun.xml.bind:jaxb-impl:jar:2.1.7 (compile)

              jaxb-impl
              Description: There is currently no description associated with this project. Project License: No license is defined for this project.

            • com.sun.xml.stream.buffer:streambuffer:jar:0.7 (compile)

              streambuffer
              Description: There is currently no description associated with this project. Project License: No license is defined for this project.

            • com.sun.xml.stream:sjsxp:jar:1.0.1 (compile)

              sjsxp
              Description: There is currently no description associated with this project. Project License: No license is defined for this project.

            • org.jvnet.staxex:stax-ex:jar:1.2 (compile)

              Extended StAX API
              Description: Extensions to JSR-173 StAX API. URL: https://stax-ex.dev.java.net/ Project License: Common Development And Distribution License (CDDL) Version 1.0

              • junit:junit:jar:3.8 (compile)

                JUnit
                Description: JUnit is a regression testing framework written by Erich Gamma and Kent Beck. It is used by the developer who implements unit tests in Java. URL: http://junit.org Project License: Common Public License Version 1.0

            • com.sun.org.apache.xml.internal:resolver:jar:20050927 (compile)

              resolver
              Description: There is currently no description associated with this project. Project License: No license is defined for this project.

            • org.jvnet:mimepull:jar:1.2 (compile)

              MIME streaming extension
              Description: Provides a streaming API to access attachments parts in a MIME message. Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0GPLv2 with classpath exception

          • com.sun.xml.bind:jaxb-xjc:jar:2.1.7 (compile)

            jaxb-xjc
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • javax.xml.ws:jaxws-api:jar:2.1-1 (compile)

          jaxws-api
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • commons-lang:commons-lang:jar:2.5 (compile)

        Commons Lang
        Description: Commons Lang, a package of Java utility classes for the classes that are in java.lang's hierarchy, or are considered to be so standard as to justify existence in java.lang. URL: http://commons.apache.org/lang/ Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.xchars:xchars:jar:1.2.6 (compile)

      XChars Java package
      Description: Java package for Special Characters handling. URL: http://intenz.sf.net/xchars/core Project License: No license is defined for this project.

    • uk.ac.ebi.xchars:xchars-config:jar:1.0.3 (compile)

      XChars configuration
      Description: Allows encoding/decoding of Special Characters. URL: http://intenz.sf.net/xchars/config Project License: No license is defined for this project.

    • commons-collections:commons-collections:jar:3.2.1 (compile)

      Commons Collections
      Description: Types that extend and augment the Java Collections Framework. URL: http://commons.apache.org/collections/ Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.intenz:intenz-mapper:jar:4.6.0 (compile)

    IntEnz mapper module
    Description: IntEnz - Mapper package URL: http://intenz.sf.net/intenz-mapper Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.rhea:rhea-mapper:jar:3.8.0 (compile)

      Mapper
      Description: Interfaces for mapping domain objects to a data source. Implementations for JDBC and web service are included. URL: http://rhea-ebi.sf.net/rhea-mapper Project License: The Apache Software License, Version 2.0

      • org.apache.lucene:lucene-core:jar:3.0.2 (compile)

        Lucene Core
        Description: Apache Lucene Java Core URL: http://lucene.apache.org/java/lucene-core Project License: Apache 2

      • uk.ac.ebi.biobabel:biobabel-lucene:jar:1.0.6 (compile)

        Lucene module
        Description: Biobabel utilities for Lucene. URL: http://intenz.sf.net/biobabel/biobabel-lucene Project License: No license is defined for this project.

      • uk.ac.ebi.chebi.utilities.structure.transformer:chebi-structure-transformer:jar:1.4.2 (compile)

        ChEBI Structures Transformer
        Description: There is currently no description associated with this project. URL: /chebi-prg/chebi-utilities/chebi-structure/chebi-structure-transformer Project License: No license is defined for this project.

        • uk.ac.ebi.chebi.model:chebi-model:jar:1.7 (compile)

          ChEBI Domain Model
          Description: ChEBI domain model URL: /chebi-prg/chebi-model Project License: No license is defined for this project.

        • chemaxon.marvin:MarvinBeans:jar:5.1.0 (compile)

          MarvinBeans
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • uk.ac.ebi.chebi.webapps.chebiWS.client:chebiWS-client:jar:2.0 (compile)

        ChEBI Public Web Services Client
        Description: The public Web Services client mostly auto-generated from JAX-WS. Project License: No license is defined for this project.

        • com.sun.xml.messaging.saaj:saaj-impl:jar:1.3.2 (compile)

          saaj-impl
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • javax.xml.soap:saaj-api:jar:1.3 (compile)

            SOAP with Attachments API Package
            Description: There is currently no description associated with this project. URL: http://java.sun.com/webservices/saaj/index.jsp Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0

    • uk.ac.ebi.biobabel:biobabel-db:jar:1.3.7 (compile)

      Database utilities
      Description: A module with database utilities. URL: http://intenz.sf.net/biobabel/biobabel-db Project License: No license is defined for this project.

      • org.antlr:antlr:jar:3.0.1 (compile)

        AntLR Parser Generator
        Description: A framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions. URL: http://antlr.org/ Project License: BSD licence

        • org.antlr:stringtemplate:jar:3.1-b1 (compile)

          StringTemplate Template Engine
          Description: StringTemplate is a java template engine (with ports for C# and Python) for generating source code, web pages, emails, or any other formatted text output. URL: http://www.stringtemplate.org Project License: BSD licence

  • uk.ac.ebi.intenz:intenz-export:jar:1.4.0 (compile)

    IntEnz export module
    Description: Module to export IntEnz in different formats URL: http://intenz.sf.net/intenz-export Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.intenz:intenz-translator:jar:1.0.12 (compile)

      IntEnz translator
      Description: Module to translate properly the XML-encoded (xchars) data into enzyme.dat-friendly text. URL: http://intenz.sf.net/intenz-translator Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.intenz:intenz-biopax:jar:1.0.6 (compile)

      BioPAX for IntEnz
      Description: BioPAX module for IntEnz URL: http://intenz.sf.net/intenz-biopax Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.intenz:intenz-database:jar:1.1.5 (compile)

      IntEnz database
      Description: IntEnz database scripts and utilities. URL: http://intenz.sf.net/intenz-database Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.rhea:rhea-cml:jar:1.0.3 (compile)

      Rhea CML
      Description: A module to export Rhea reactions as CML-React. URL: http://rhea-ebi.sf.net/rhea-cml Project License: The Apache Software License, Version 2.0

    • commons-cli:commons-cli:jar:1.2 (compile)

      Commons CLI
      Description: Commons CLI provides a simple API for presenting, processing and validating a command line interface. URL: http://commons.apache.org/cli/ Project License: The Apache Software License, Version 2.0

    • org.apache.velocity:velocity:jar:1.7 (compile)

      Apache Velocity
      Description: Apache Velocity is a general purpose template engine. URL: http://velocity.apache.org/engine/devel/ Project License: The Apache Software License, Version 2.0

    • xerces:xercesImpl:jar:2.9.1 (compile)

      Xerces2 Java Parser

      Description: Xerces2 is the next generation of high performance, fully compliant XML parsers in the Apache Xerces family. This new version of Xerces introduces the Xerces Native Interface (XNI), a complete framework for building parser components and configurations that is extremely modular and easy to program. URL: http://xerces.apache.org/xerces2-j Project License: The Apache Software License, Version 2.0

      • xml-apis:xml-apis:jar:1.3.04 (compile)

        XML Commons External Components XML APIs

        Description: xml-commons provides an Apache-hosted set of DOM, SAX, and JAXP interfaces for use in other xml-based projects. Our hope is that we can standardize on both a common version and packaging scheme for these critical XML standards interfaces to make the lives of both our developers and users easier. The External Components portion of xml-commons contains interfaces that are defined by external standards organizations. For DOM, that's the W3C; for SAX it's David Megginson and sax.sourceforge.net; for JAXP it's Sun. URL: http://xml.apache.org/commons/components/external/ Project License: The Apache Software License, Version 2.0

    • javax.mail:mail:jar:1.4.3 (compile)

      JavaMail API
      Description: JavaMail API URL: http://java.sun.com/projects/javamail/mail Project License: CDDLGPLv2+CE

      • javax.activation:activation:jar:1.1 (compile)

        JavaBeans Activation Framework (JAF)

        Description: JavaBeans Activation Framework (JAF) is a standard extension to the Java platform that lets you take advantage of standard services to: determine the type of an arbitrary piece of data; encapsulate access to it; discover the operations available on it; and instantiate the appropriate bean to perform the operation(s). URL: http://java.sun.com/products/javabeans/jaf/index.jsp Project License: Common Development and Distribution License (CDDL) v1.0

    • org.sitemaps:sitemaps:jar:0.9 (compile)

      sitemaps
      Description: JAXB-generated package to handle Google sitemaps XML files. URL: http://www.sitemaps.org Project License: No license is defined for this project.

      • javax.xml.bind:jaxb-api:jar:2.1 (compile)

        jaxb-api
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • javax.xml.stream:stax-api:jar:1.0-2 (compile)

          Streaming API for XML
          Description: StAX is a standard XML processing API that allows you to stream XML data from and to your application. Project License: GNU General Public LibraryCOMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0

    • org.glassfish:javax.json:jar:1.0.2 (compile)

      JSR 353 (JSON Processing) Default Provider
      Description: Default provider for JSR 353:Java API for Processing JSON URL: http://jsonp.java.net Project License: Dual license consisting of the CDDL v1.1 and GPL v2

  • uk.ac.ebi.intenz:intenz-xml:jar:1.1.2 (compile)

    IntEnzXML
    Description: XML format for IntEnz. URL: http://intenz.sf.net/intenz-xml Project License: No license is defined for this project.

    • org.cml:cml-react:jar:2.0 (compile)

      CML-React
      Description: Chemical Markup Language for reactions URL: http://www.xml-cml.org Project License: No license is defined for this project.

  • uk.ac.ebi.intenz:intenz-ffwriter:jar:1.3.0 (compile)

    IntEnz flat file writer
    Description: ENZYME.dat flat file writer URL: http://intenz.sf.net/intenz-ffwriter Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi:sptr:jar:10.5 (compile)

      sptr
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • uk.ac.ebi:yasp:jar:10.5 (compile)

        yasp
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • uk.ac.ebi:aristotle:jar:10.5 (compile)

        aristotle
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • antlr:antlr:jar:2.7.6 (compile)

        antlr
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • uk.ac.ebi.intenz.webapp:intenz-config:jar:1.0.1 (compile)

    intenz-config
    Description: A module to manage common configurations for intenz web applications. URL: http://intenz.sf.net/webapp/intenz-config Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.rhea:rhea-biopax:jar:1.4.8 (compile)

    Biopax
    Description: Module to read/write BioPAX data in OWL format. URL: http://rhea-ebi.sf.net/rhea-biopax Project License: The Apache Software License, Version 2.0

    • org.biopax.paxtools:paxtools-core:jar:4.2.0 (compile)

      paxtools-core
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • net.sourceforge.collections:collections-generic:jar:4.01 (compile)

        larvalabs collections
        Description: There is currently no description associated with this project. URL: http://collections.sourceforge.net Project License: Apache License V2.0

      • commons-logging:commons-logging:jar:1.1.1 (compile)

        Commons Logging
        Description: Commons Logging is a thin adapter allowing configurable bridging to other, well known logging systems. URL: http://commons.apache.org/logging Project License: The Apache Software License, Version 2.0

    • org.biopax.paxtools:paxtools-jena-io:jar:4.2.0 (compile)

      paxtools-jena-io
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • com.hp.hpl.jena:jena:jar:2.5.7 (compile)

        Jena
        Description: Jena is a Java framework for building Semantic Web applications. It provides a programmatic environment for RDF, RDFS and OWL, SPARQL and includes a rule-based inference engine. URL: http://jena.sourceforge.net/ Project License: BSD

        • com.hp.hpl.jena:arq:jar:2.6.0 (compile)

          ARQ
          Description: ARQ is a query engine for Jena that supports the SPARQL RDF Query language. SPARQL is the query language developed by the W3C RDF Data Access Working Group. URL: http://jena.sourceforge.net/ARQ/ Project License: BSD

          • stax:stax-api:jar:1.0 (compile)

            stax-api
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • woodstox:wstx-asl:jar:3.0.0 (compile)

            wstx-asl
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • com.hp.hpl.jena:json-jena:jar:1.0 (compile)

            json-jena
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • com.hp.hpl.jena:iri:jar:0.5 (compile)

          IRI
          Description: An implementation of RFC 3987 (IRI) and RFC 3986 (URI) URL: http://jena.sourceforge.net/ Project License: BSD

        • com.hp.hpl.jena:concurrent-jena:jar:1.3.2 (compile)

          concurrent-jena
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • com.ibm.icu:icu4j:jar:3.4.4 (compile)

          ICU4J
          Description: The International Component for Unicode (ICU) is a mature, portable set of C/C++ and Java libraries for Unicode support, software internationalization (I18N) and globalization (G11N), giving applications the same results on all platforms. URL: http://www-306.ibm.com/software/globalization/icu/ Project License: ICU License

        • xerces:xmlParserAPIs:jar:2.0.2 (compile)

          xmlParserAPIs
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • uk.ac.ebi.biobabel:biobabel-core:jar:0.16 (compile)

    Core Utility Modules
    Description: The Biobabel Utility Core Modules. URL: http://intenz.sf.net/biobabel/biobabel-core Project License: No license is defined for this project.

  • uk.ac.ebi.biobabel.webapp:biobabel-webapp:jar:0.1.6 (compile)

    Webapp module
    Description: The Biobabel Utility Module for webapps. URL: http://intenz.sf.net/biobabel/biobabel-webapp Project License: No license is defined for this project.

  • commons-pool:commons-pool:jar:1.6 (compile)

    Commons Pool
    Description: Commons Object Pooling Library URL: http://commons.apache.org/pool/ Project License: The Apache Software License, Version 2.0

  • javax.servlet:servlet-api:jar:2.5 (provided)

    servlet-api
    Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • log4j:log4j:jar:1.2.17 (compile)

    Apache Log4j
    Description: Apache Log4j 1.2 URL: http://logging.apache.org/log4j/1.2/ Project License: The Apache Software License, Version 2.0