compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

provided

The following is a list of provided dependencies for this project. These dependencies are required to compile the application, but should be provided by default when using the library:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

Dependency Tree

• uk.ac.ebi.intenz.webapp:intenz-public:war:71.0.9

  IntEnz public webapp
  Description: IntEnz public web application URL: http://intenz.sf.net/webapp/intenz-public Project License: Creative Commons Attribution (CC BY) 3.0

  • uk.ac.ebi.intenz:intenz-core:jar:4.3.3 (compile)

    IntEnz core module
    Description: IntEnz - Core package URL: http://intenz.sf.net/intenz-core Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.intenz:intenz-mapper:jar:4.6.0 (compile)

    IntEnz mapper module
    Description: IntEnz - Mapper package URL: http://intenz.sf.net/intenz-mapper Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.rhea:rhea-mapper:jar:3.8.0 (compile)

      Mapper
      Description: Interfaces for mapping domain objects to a data source. Implementations for JDBC and web service are included. URL: http://rhea-ebi.sf.net/rhea-mapper Project License: The Apache Software License, Version 2.0

      • org.apache.lucene:lucene-core:jar:3.0.2 (compile)

        Lucene Core
        Description: Apache Lucene Java Core URL: http://lucene.apache.org/java/lucene-core Project License: Apache 2

      • uk.ac.ebi.biobabel:biobabel-lucene:jar:1.0.6 (compile)

        Lucene module
        Description: Biobabel utilities for Lucene. URL: http://intenz.sf.net/biobabel/biobabel-lucene Project License: No license is defined for this project.

      • uk.ac.ebi.chebi.utilities.structure.transformer:chebi-structure-transformer:jar:1.4.2 (compile)

        ChEBI Structures Transformer
        Description: There is currently no description associated with this project. URL: /chebi-prg/chebi-utilities/chebi-structure/chebi-structure-transformer Project License: No license is defined for this project.

        • uk.ac.ebi.chebi.model:chebi-model:jar:1.7 (compile)

          ChEBI Domain Model
          Description: ChEBI domain model URL: /chebi-prg/chebi-model Project License: No license is defined for this project.

        • chemaxon.marvin:MarvinBeans:jar:5.1.0 (compile)

          MarvinBeans
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • uk.ac.ebi.chebi.webapps.chebiWS.client:chebiWS-client:jar:2.0 (compile)

        ChEBI Public Web Services Client
        Description: The public Web Services client mostly auto-generated from JAX-WS. Project License: No license is defined for this project.

        • com.sun.xml.messaging.saaj:saaj-impl:jar:1.3.2 (compile)

          saaj-impl
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    • uk.ac.ebi.biobabel:biobabel-db:jar:1.3.7 (compile)

      Database utilities
      Description: A module with database utilities. URL: http://intenz.sf.net/biobabel/biobabel-db Project License: No license is defined for this project.

      • org.antlr:antlr:jar:3.0.1 (compile)

        AntLR Parser Generator
        Description: A framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions. URL: http://antlr.org/ Project License: BSD licence

        • org.antlr:stringtemplate:jar:3.1-b1 (compile)

          StringTemplate Template Engine
          Description: StringTemplate is a java template engine (with ports for C# and Python) for generating source code, web pages, emails, or any other formatted text output. URL: http://www.stringtemplate.org Project License: BSD licence

    • log4j:log4j:jar:1.2.17 (compile)

      Apache Log4j
      Description: Apache Log4j 1.2 URL: http://logging.apache.org/log4j/1.2/ Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.intenz:intenz-ffwriter:jar:1.3.0 (compile)

    IntEnz flat file writer
    Description: ENZYME.dat flat file writer URL: http://intenz.sf.net/intenz-ffwriter Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.intenz:intenz-translator:jar:1.0.12 (compile)

      IntEnz translator
      Description: Module to translate properly the XML-encoded (xchars) data into enzyme.dat-friendly text. URL: http://intenz.sf.net/intenz-translator Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi:sptr:jar:10.5 (compile)

      sptr
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • uk.ac.ebi:yasp:jar:10.5 (compile)

        yasp
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • uk.ac.ebi:aristotle:jar:10.5 (compile)

        aristotle
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • antlr:antlr:jar:2.7.6 (compile)

        antlr
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • uk.ac.ebi.intenz:intenz-database:jar:1.1.5 (compile)

    IntEnz database
    Description: IntEnz database scripts and utilities. URL: http://intenz.sf.net/intenz-database Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.intenz.webapp:intenz-config:jar:1.0.1 (compile)

    intenz-config
    Description: A module to manage common configurations for intenz web applications. URL: http://intenz.sf.net/webapp/intenz-config Project License: Creative Commons Attribution (CC BY) 3.0

  • uk.ac.ebi.rhea:rhea-domain:jar:1.8.1 (compile)

    Domain model
    Description: The domain model of Rhea. URL: http://rhea-ebi.sf.net/rhea-domain Project License: Creative Commons Attribution (CC BY) 3.0

    • commons-lang:commons-lang:jar:2.5 (compile)

      Commons Lang
      Description: Commons Lang, a package of Java utility classes for the classes that are in java.lang's hierarchy, or are considered to be so standard as to justify existence in java.lang. URL: http://commons.apache.org/lang/ Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.rhea.webapp:rhea-taglib:war:1.1 (compile)

    Rhea taglib
    Description: A tag library to display Rhea objects in a web applicaiton. URL: http://rhea-ebi.sf.net/webapp/rhea-taglib Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.xchars:xchars:jar:1.2.6 (compile)

    XChars Java package
    Description: Java package for Special Characters handling. URL: http://intenz.sf.net/xchars/core Project License: No license is defined for this project.

  • uk.ac.ebi.xchars:xchars-config:jar:1.0.3 (compile)

    XChars configuration
    Description: Allows encoding/decoding of Special Characters. URL: http://intenz.sf.net/xchars/config Project License: No license is defined for this project.

  • uk.ac.ebi.xchars:xchars-taglib:jar:1.0.2 (compile)

    XChars tag library
    Description: Tag library to make special characters transformations from JSPs. URL: http://intenz.sf.net/xchars/taglib Project License: No license is defined for this project.

  • uk.ac.ebi.biobabel:biobabel-core:jar:0.16 (compile)

    Core Utility Modules
    Description: The Biobabel Utility Core Modules. URL: http://intenz.sf.net/biobabel/biobabel-core Project License: No license is defined for this project.

  • uk.ac.ebi.biobabel.webapp:biobabel-webapp:jar:0.1.6 (compile)

    Webapp module
    Description: The Biobabel Utility Module for webapps. URL: http://intenz.sf.net/biobabel/biobabel-webapp Project License: No license is defined for this project.

  • uk.ac.ebi.biobabel:biobabel-citations:jar:2.0.2 (compile)

    Citations utilities
    Description: A module to handle citations from CiteXplore. URL: http://intenz.sf.net/biobabel/biobabel-citations Project License: No license is defined for this project.

    • com.sun.xml.ws:jaxws-tools:jar:2.1.4 (compile)

      JAX-WS (JSR-224) Reference Implementation Tools
      Description: Open source Reference Implementation of JSR-224: Java API for XML Web Services URL: https://jax-ws.dev.java.net// Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0GPLv2 with classpath exception

      • com.sun.xml.ws:jaxws-rt:jar:2.1.4 (compile)

        JAX-WS (JSR-224) Reference Implementation
        Description: Open source Reference Implementation of JSR-224: Java API for XML Web Services URL: https://jax-ws.dev.java.net// Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0GPLv2 with classpath exception

        • com.sun.xml.bind:jaxb-impl:jar:2.1.7 (compile)

          jaxb-impl
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • com.sun.xml.stream.buffer:streambuffer:jar:0.7 (compile)

          streambuffer
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • com.sun.xml.stream:sjsxp:jar:1.0.1 (compile)

          sjsxp
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • org.jvnet.staxex:stax-ex:jar:1.2 (compile)

          Extended StAX API
          Description: Extensions to JSR-173 StAX API. URL: https://stax-ex.dev.java.net/ Project License: Common Development And Distribution License (CDDL) Version 1.0

        • com.sun.org.apache.xml.internal:resolver:jar:20050927 (compile)

          resolver
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • org.jvnet:mimepull:jar:1.2 (compile)

          MIME streaming extension
          Description: Provides a streaming API to access attachments parts in a MIME message. Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0GPLv2 with classpath exception

      • com.sun.xml.bind:jaxb-xjc:jar:2.1.7 (compile)

        jaxb-xjc
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    • javax.xml.bind:jaxb-api:jar:2.1 (compile)

      jaxb-api
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • javax.xml.stream:stax-api:jar:1.0-2 (compile)

        stax-api
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    • javax.xml.ws:jaxws-api:jar:2.1-1 (compile)

      JAX-WS API
      Description: JAX-WS API URL: https://jax-ws.dev.java.net/ Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0

      • javax.xml.soap:saaj-api:jar:1.3 (compile)

        saaj-api
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • javax.annotation:jsr250-api:jar:1.0 (compile)

        javax.annotation Package, from jax-ws
        Description: There is currently no description associated with this project. URL: https://jax-ws.dev.java.net/ Project License: No license is defined for this project.

      • javax.jws:jsr181:jar:1.0 (compile)

        Web Services Metadata for the Java Platform API
        Description: There is currently no description associated with this project. URL: http://dev2dev.bea.com/webservices/jwsm.html Project License: No license is defined for this project.

  • javax.servlet:servlet-api:jar:2.4 (provided)

    servlet-api
    Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • javax.servlet:jsp-api:jar:2.0 (provided)

    jsp-api
    Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • javax.mail:mail:jar:1.4.3 (compile)

    JavaMail API
    Description: JavaMail API URL: http://java.sun.com/projects/javamail/mail Project License: CDDLGPLv2+CE

    • javax.activation:activation:jar:1.1 (compile)

      activation
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • commons-collections:commons-collections:jar:3.2.1 (compile)

    Commons Collections
    Description: Types that extend and augment the Java Collections Framework. URL: http://commons.apache.org/collections/ Project License: The Apache Software License, Version 2.0

  • taglibs:standard:jar:1.1.2 (compile)

    standard
    Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • javax.servlet:jstl:jar:1.1.2 (compile)

    jstl
    Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • jstl:c:tld:1.1.2 (compile)

    c
    Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • xalan:xalan:jar:2.7.0 (compile)

    xalan
    Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • com.oracle:ojdbc5:jar:11.1.0.7.0 (provided)

    ojdbc5
    Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • junit:junit:jar:3.8.2 (test)

    JUnit
    Description: JUnit is a regression testing framework written by Erich Gamma and Kent Beck. It is used by the developer who implements unit tests in Java. URL: http://junit.org Project License: Common Public License Version 1.0