The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:
The following is a list of runtime dependencies for this project. These dependencies are required to run the application:
GroupId | ArtifactId | Version | Type | License |
---|---|---|---|---|
uk.ac.ebi.xchars | xchars-palette | 1.1 | war | - |
The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:
GroupId | ArtifactId | Version | Type | License |
---|---|---|---|---|
junit | junit | 3.8.1 | jar | Common Public License Version 1.0 |
The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.
The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:
GroupId | ArtifactId | Version | Type | License |
---|---|---|---|---|
antlr | antlr | 2.7.7 | jar | BSD License |
chemaxon.marvin | MarvinBeans | 5.1.0 | jar | - |
chemaxon.marvin | MarvinBeans-all | 6.2.0 | jar | - |
com.hp.hpl.jena | arq | 2.6.0 | jar | BSD |
com.hp.hpl.jena | concurrent-jena | 1.3.2 | jar | - |
com.hp.hpl.jena | iri | 0.5 | jar | BSD |
com.hp.hpl.jena | jena | 2.5.7 | jar | BSD |
com.hp.hpl.jena | json-jena | 1.0 | jar | - |
com.ibm.icu | icu4j | 3.4.4 | jar | ICU License |
com.lowagie | itext | 1.3 | jar | - |
com.sun.org.apache.xml.internal | resolver | 20050927 | jar | - |
com.sun.xml.bind | jaxb-impl | 2.1.7 | jar | - |
com.sun.xml.bind | jaxb-xjc | 2.1.7 | jar | - |
com.sun.xml.messaging.saaj | saaj-impl | 1.3.2 | jar | - |
com.sun.xml.stream | sjsxp | 1.0.1 | jar | - |
com.sun.xml.stream.buffer | streambuffer | 0.7 | jar | - |
com.sun.xml.ws | jaxws-rt | 2.1.4 | jar | COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0-GPLv2 with classpath exception |
com.sun.xml.ws | jaxws-tools | 2.1.4 | jar | COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0-GPLv2 with classpath exception |
commons-beanutils | commons-beanutils | 1.7.0 | jar | - |
commons-digester | commons-digester | 1.5 | jar | - |
commons-fileupload | commons-fileupload | 1.0 | jar | - |
commons-lang | commons-lang | 2.5 | jar | The Apache Software License, Version 2.0 |
commons-logging | commons-logging | 1.0.4 | jar | /LICENSE.txt |
commons-validator | commons-validator | 1.1.3 | jar | - |
javax.activation | activation | 1.1 | jar | Common Development and Distribution License (CDDL) v1.0 |
javax.xml.bind | jaxb-api | 2.1 | jar | - |
javax.xml.soap | saaj-api | 1.3 | jar | COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0 |
javax.xml.stream | stax-api | 1.0-2 | jar | GNU General Public Library-COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0 |
javax.xml.ws | jaxws-api | 2.1-1 | jar | - |
net.sourceforge.collections | collections-generic | 4.01 | jar | Apache License V2.0 |
org.antlr | antlr | 3.0.1 | jar | BSD licence |
org.antlr | stringtemplate | 3.1-b1 | jar | BSD licence |
org.apache.lucene | lucene-core | 3.0.2 | jar | Apache 2 |
org.apache.velocity | velocity | 1.7 | jar | The Apache Software License, Version 2.0 |
org.biopax.paxtools | paxtools-core | 4.2.0 | jar | - |
org.biopax.paxtools | paxtools-jena-io | 4.2.0 | jar | - |
org.jvnet | mimepull | 1.2 | jar | COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0-GPLv2 with classpath exception |
org.jvnet.staxex | stax-ex | 1.2 | jar | Common Development And Distribution License (CDDL) Version 1.0 |
org.slf4j | jcl104-over-slf4j | 1.4.2 | jar | - |
org.slf4j | slf4j-api | 1.4.2 | jar | - |
org.slf4j | slf4j-log4j12 | 1.4.2 | jar | - |
oro | oro | 2.0.7 | jar | - |
stax | stax-api | 1.0 | jar | - |
struts | struts-nested | 1.2.4 | tld | - |
uk.ac.ebi | aristotle | 10.5 | jar | - |
uk.ac.ebi | sptr | 10.5 | jar | - |
uk.ac.ebi | yasp | 10.5 | jar | - |
uk.ac.ebi.biobabel | biobabel-lucene | 1.0.6 | jar | - |
uk.ac.ebi.chebi.model | chebi-model | 1.7 | jar | - |
uk.ac.ebi.chebi.utilities.structure.transformer | chebi-structure-transformer | 1.4.2 | jar | - |
uk.ac.ebi.chebi.webapps.chebiWS.client | chebiWS-client | 2.0 | jar | - |
uk.ac.ebi.intenz | intenz-translator | 1.0.12 | jar | The Apache Software License, Version 2.0 |
uk.ac.ebi.rhea | rhea-find | 2.2.6 | jar | The Apache Software License, Version 2.0 |
uk.ac.ebi.rhea | rhea-search | 3.1 | jar | The Apache Software License, Version 2.0 |
woodstox | wstx-asl | 3.0.0 | jar | - |
xalan | xalan | 2.7.0 | jar | - |
xerces | xercesImpl | 2.7.1 | jar | - |
xerces | xmlParserAPIs | 2.0.2 | jar | - |
xml-apis | xml-apis | 1.0.b2 | jar | The Apache Software License, Version 2.0 |
ICU License: ICU4J
Apache 2: Lucene Core
Unknown: ChEBI Domain Model, ChEBI Public Web Services Client, ChEBI Structures Transformer, Citations utilities, Core Utility Modules, Database utilities, Digester, FileUpload, JCL Implemented Over SLF4J, Lucene module, MarvinBeans, MarvinBeans-all, SLF4J API Module, SLF4J LOG4J-12 Binding, Webapp module, XChars Java package, XChars configuration, XChars palette, XChars tag library, ajaxtags, ajaxtags-resources, aristotle, c, commons-beanutils, commons-validator, concurrent-jena, itext, jaxb-api, jaxb-impl, jaxb-xjc, jaxws-api, json-jena, jsp-api, jstl, oro, paxtools-core, paxtools-jena-io, resolver, saaj-impl, servlet-api, sjsxp, sptr, standard, stax-api, streambuffer, struts, struts-bean, struts-html, struts-logic, struts-nested, struts-tiles, wstx-asl, xalan, xercesImpl, xmlParserAPIs, yasp
BSD: ARQ, IRI, Jena
BSD licence: AntLR Parser Generator, StringTemplate Template Engine
COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0: JAX-WS (JSR-224) Reference Implementation, JAX-WS (JSR-224) Reference Implementation Tools, MIME streaming extension, SOAP with Attachments API Package, Streaming API for XML
GPLv2 with classpath exception: JAX-WS (JSR-224) Reference Implementation, JAX-WS (JSR-224) Reference Implementation Tools, MIME streaming extension
The Apache Software License, Version 2.0: Apache Log4j, Apache Velocity, Biopax, Commons Collections, Commons Lang, Find, Finder for Struts1, IntEnz core module, IntEnz curator webapp, IntEnz flat file writer, IntEnz mapper module, IntEnz translator, Logging, Mapper, Rhea taglib, Search, Search for Struts1, Utilities, Webapp utilities, XML Commons External Components XML APIs, pH utilities
Artistic License: Display tag library
Common Development And Distribution License (CDDL) Version 1.0: Extended StAX API
Apache License V2.0: larvalabs collections
BSD License: AntLR Parser Generator
GNU General Public Library: Streaming API for XML
Common Public License Version 1.0: JUnit
Common Development and Distribution License (CDDL) v1.0: JavaBeans Activation Framework (JAF), JavaMail API
Creative Commons Attribution (CC BY) 3.0: Domain model
Filename | Size | Entries | Classes | Packages | JDK Rev | Debug |
---|---|---|---|---|---|---|
antlr-2.7.7.jar | 434.85 kB | 239 | 224 | 12 | 1.2 | debug |
MarvinBeans-5.1.0.jar | 9.18 MB | 3,942 | 2,794 | 145 | 1.2 | release |
MarvinBeans-all-6.2.0.jar | 51.29 MB | 10,298 | 7,227 | 425 | 1.6 | debug |
arq-2.6.0.jar | 1.25 MB | 1,041 | 981 | 53 | 1.4 | debug |
concurrent-jena-1.3.2.jar | 123.51 kB | 151 | 143 | 1 | 1.2 | release |
iri-0.5.jar | 147.42 kB | 81 | 72 | 3 | 1.4 | debug |
jena-2.5.7.jar | 2.12 MB | 1,712 | 1,571 | 56 | 1.4 | debug |
json-jena-1.0.jar | 33.83 kB | 19 | 15 | 1 | 1.2 | debug |
icu4j-3.4.4.jar | 3.08 MB | 1,073 | 525 | 6 | 1.3 | debug |
itext-1.3.jar | 1.09 MB | 621 | 567 | 25 | 1.2 | debug |
resolver-20050927.jar | 66.58 kB | 37 | 25 | 4 | 1.5 | debug |
jaxb-impl-2.1.7.jar | 834.86 kB | 694 | 647 | 29 | 1.5 | debug |
jaxb-xjc-2.1.7.jar | 2.98 MB | 2,415 | 1,660 | 96 | 1.5 | debug |
saaj-impl-1.3.2.jar | 271.63 kB | 182 | 149 | 13 | 1.4 | debug |
sjsxp-1.0.1.jar | 324.27 kB | 185 | 159 | 11 | 1.4 | debug |
streambuffer-0.7.jar | 56.62 kB | 40 | 31 | 3 | 1.5 | debug |
jaxws-rt-2.1.4.jar | 1.22 MB | 977 | 878 | 68 | 1.5 | debug |
jaxws-tools-2.1.4.jar | 498.92 kB | 318 | 269 | 29 | 1.5 | debug |
commons-beanutils-1.7.0.jar | 184.25 kB | 129 | 111 | 5 | 1.2 | debug |
commons-collections-3.2.1.jar | 561.90 kB | 482 | 458 | 12 | 1.2 | debug |
commons-digester-1.5.jar | 106.54 kB | 72 | 55 | 3 | 1.2 | debug |
commons-fileupload-1.0.jar | 21.85 kB | 24 | 16 | 1 | 1.2 | debug |
commons-lang-2.5.jar | 272.65 kB | 154 | 132 | 10 | 1.3 | debug |
commons-logging-1.0.4.jar | 37.12 kB | 29 | 18 | 2 | 1.2 | debug |
commons-validator-1.1.3.jar | 82.29 kB | 59 | 30 | 2 | 1.1 | debug |
displaytag-1.2.jar | 213.99 kB | 147 | 122 | 13 | 1.4 | debug |
activation-1.1.jar | 61.51 kB | 50 | 38 | 3 | 1.4 | debug |
mail-1.4.1.jar | 437.18 kB | 303 | 279 | 13 | 1.4 | debug |
jsp-api-2.0.jar | 49.31 kB | 56 | 42 | 3 | 1.2 | debug |
jstl-1.1.2.jar | 20.20 kB | 28 | 18 | 4 | 1.2 | debug |
servlet-api-2.4.jar | 95.40 kB | 67 | 42 | 2 | 1.2 | debug |
jaxb-api-2.1.jar | 87.86 kB | 113 | 100 | 6 | 1.5 | debug |
saaj-api-1.3.jar | 18.38 kB | 34 | 29 | 1 | 1.4 | release |
stax-api-1.0-2.jar | 22.80 kB | 44 | 37 | 3 | 1.5 | debug |
jaxws-api-2.1-1.jar | 35.22 kB | 68 | 57 | 7 | 1.5 | debug |
c-1.1.2.tld | 16.17 kB | - | - | - | - | - |
junit-3.8.1.jar | 118.23 kB | 119 | 100 | 6 | 1.1 | debug |
log4j-1.2.17.jar | 478.40 kB | 353 | 314 | 21 | 1.4 | debug |
ajaxtags-1.5.jar | 50.82 kB | 52 | 36 | 4 | 1.5 | debug |
ajaxtags-resources-1.5.war | 99.59 kB | 39 | 0 | 0 | - | release |
collections-generic-4.01.jar | 519.10 kB | 406 | 386 | 13 | 1.5 | debug |
antlr-3.0.1.jar | 549.15 kB | 254 | 195 | 9 | 1.4 | debug |
stringtemplate-3.1-b1.jar | 224.54 kB | 113 | 75 | 4 | 1.4 | debug |
lucene-core-3.0.2.jar | 1,008.75 kB | 730 | 709 | 15 | 1.5 | debug |
velocity-1.7.jar | 438.97 kB | 306 | 270 | 25 | 1.4 | debug |
paxtools-core-4.2.0.jar | 477.46 kB | 404 | 374 | 11 | 1.6 | debug |
paxtools-jena-io-4.2.0.jar | 14.44 kB | 15 | 2 | 1 | 1.6 | debug |
mimepull-1.2.jar | 37.76 kB | 42 | 32 | 1 | 1.5 | debug |
stax-ex-1.2.jar | 10.81 kB | 19 | 9 | 1 | 1.5 | debug |
jcl104-over-slf4j-1.4.2.jar | 15.10 kB | 23 | 9 | 2 | 1.3 | debug |
slf4j-api-1.4.2.jar | 14.92 kB | 28 | 17 | 3 | 1.3 | debug |
slf4j-log4j12-1.4.2.jar | 8.42 kB | 16 | 6 | 1 | 1.3 | debug |
oro-2.0.7.jar | 63.89 kB | 74 | 62 | 6 | 1.2 | release |
stax-api-1.0.jar | 25.26 kB | 48 | 40 | 5 | 1.2 | debug |
struts-1.2.4.jar | 514.24 kB | 354 | 289 | 25 | 1.2 | debug |
struts-bean-1.2.4.tld | 8.65 kB | - | - | - | - | - |
struts-html-1.2.4.tld | 65.98 kB | - | - | - | - | - |
struts-logic-1.2.4.tld | 14.39 kB | - | - | - | - | - |
struts-nested-1.2.4.tld | 63.53 kB | - | - | - | - | - |
struts-tiles-1.2.4.tld | 7.66 kB | - | - | - | - | - |
standard-1.1.2.jar | 384.04 kB | 307 | 254 | 23 | 1.2 | debug |
aristotle-10.5.jar | 946.73 kB | 464 | 428 | 29 | 1.2 | debug |
sptr-10.5.jar | 102.11 kB | 145 | 124 | 16 | 1.2 | debug |
yasp-10.5.jar | 1.68 MB | 772 | 753 | 5 | 1.4 | debug |
biobabel-citations-2.0.3.jar | 76.19 kB | 97 | 83 | 2 | 1.5 | debug |
biobabel-core-0.16.jar | 42.67 kB | 41 | 25 | 4 | 1.5 | debug |
biobabel-db-1.3.7.jar | 25.19 kB | 28 | 12 | 1 | 1.5 | debug |
biobabel-lucene-1.0.6.jar | 6.49 kB | 15 | 3 | 1 | 1.5 | debug |
biobabel-webapp-0.1.6.jar | 12.48 kB | 23 | 7 | 3 | 1.5 | debug |
chebi-model-1.7.jar | 104.93 kB | 83 | 62 | 9 | 1.5 | debug |
chebi-structure-transformer-1.4.2.jar | 15.86 kB | 18 | 4 | 1 | 1.5 | debug |
chebiWS-client-2.0.jar | 45.06 kB | 53 | 35 | 3 | 1.5 | debug |
intenz-core-4.3.3.jar | 78.28 kB | 66 | 48 | 7 | 1.5 | debug |
intenz-ffwriter-1.2.54.jar | 55.31 kB | 44 | 24 | 7 | 1.5 | debug |
intenz-mapper-4.6.0.jar | 68.73 kB | 30 | 18 | 1 | 1.5 | debug |
intenz-translator-1.0.12.jar | 39.90 kB | 33 | 9 | 2 | 1.5 | debug |
rhea-biopax-1.4.8.jar | 31.97 kB | 23 | 10 | 1 | 1.5 | debug |
rhea-domain-1.8.0.jar | 105.40 kB | 83 | 69 | 2 | 1.5 | debug |
rhea-find-2.2.6.jar | 9.55 kB | 14 | 2 | 1 | 1.5 | debug |
rhea-mapper-3.8.0.jar | 125.74 kB | 74 | 45 | 7 | 1.5 | debug |
rhea-ph-1.1.5.jar | 12.22 kB | 19 | 4 | 1 | 1.5 | debug |
rhea-search-3.1.jar | 14.18 kB | 16 | 4 | 1 | 1.5 | debug |
rhea-util-4.1.jar | 55.09 kB | 46 | 25 | 1 | 1.5 | debug |
rhea-find-struts1-1.4-classes.jar | 32.13 kB | 33 | 17 | 2 | 1.5 | debug |
rhea-find-struts1-1.4.war | 83.86 MB | 189 | 17 | 2 | 1.5 | debug |
rhea-search-struts1-1.4-classes.jar | 15.47 kB | 21 | 6 | 2 | 1.5 | debug |
rhea-search-struts1-1.4.war | 80.10 MB | 118 | 6 | 2 | 1.5 | debug |
rhea-taglib-1.1.war | 14.43 kB | 28 | 0 | 0 | - | release |
rhea-webapp-util-1.2.3.jar | 9.73 kB | 19 | 5 | 2 | 1.5 | debug |
xchars-1.2.6.jar | 41.50 kB | 46 | 30 | 6 | 1.5 | debug |
xchars-config-1.0.3.jar | 14.82 kB | 9 | 0 | 0 | - | release |
xchars-palette-1.1.war | 62.98 kB | 28 | 3 | 1 | 1.5 | debug |
xchars-taglib-1.0.2.jar | 6.69 kB | 16 | 3 | 1 | 1.5 | debug |
wstx-asl-3.0.0.jar | 462.10 kB | 248 | 238 | 18 | 1.2 | debug |
xalan-2.7.0.jar | 2.60 MB | 1,267 | 1,205 | 42 | 1.1 | debug |
xercesImpl-2.7.1.jar | 1.15 MB | 938 | 870 | 38 | 1.1 | release |
xmlParserAPIs-2.0.2.jar | 76.60 kB | 144 | 128 | 9 | 1.1 | debug |
xml-apis-1.0.b2.jar | 106.76 kB | 217 | 184 | 17 | 1.2 | release |
Total | Size | Entries | Classes | Packages | JDK Rev | Debug |
98 | 254.46 MB | 35,094 | 27,206 | 1,493 | 1.6 | 83 |
compile: 94 | compile: 254.14 MB | compile: 34,824 | compile: 27,019 | compile: 1,481 | - | compile: 79 |
test: 1 | test: 118.23 kB | test: 119 | test: 100 | test: 6 | - | test: 1 |
runtime: 1 | runtime: 62.98 kB | runtime: 28 | runtime: 3 | runtime: 1 | - | runtime: 1 |
provided: 2 | provided: 144.71 kB | provided: 123 | provided: 84 | provided: 5 | - | provided: 2 |
Repo ID | URL | Release | Snapshot |
---|---|---|---|
biobabel-repo | http://www.ebi.ac.uk/~biobabel/maven2_repo | Yes | Yes |
paxtools-snapshots | http://biopax.sourceforge.net/m2repo/snapshots/ | - | Yes |
chebi-repo | http://www.ebi.ac.uk/~biobabel/maven2_repo | Yes | Yes |
apache.snapshots | http://people.apache.org/repo/m2-snapshot-repository | - | Yes |
ebi-repo | http://www.ebi.ac.uk/~maven/m2repo | Yes | - |
displaytag | http://displaytag.sourceforge.net/m2repo | Yes | Yes |
java.net | https://maven-repository.dev.java.net/nonav/repository | Yes | Yes |
jboss-thirdparty-releases | https://repository.jboss.org/nexus/content/repositories/thirdparty-releases | Yes | Yes |
maven2-repository.dev.java.net | http://download.java.net/maven/2/ | Yes | Yes |
paxtools | http://biopax.sourceforge.net/m2repo/releases/ | Yes | - |
ibiblio | http://mirrors.ibiblio.org/pub/mirrors/maven2/ | Yes | Yes |
central | http://repo.maven.apache.org/maven2 | Yes | - |
dev.java.net.2 | http://download.java.net/maven/2/ | Yes | Yes |
ebi-repo-snapshots | http://www.ebi.ac.uk/~maven/m2repo_snapshots | - | Yes |
maven-repo | http://repo1.maven.org/maven2 | Yes | Yes |
Repository locations for each of the Dependencies.