All Element Summary | ||||||||||||
i:accepted_name | The commonly accepted name of the enzyme
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i:authors (type xs:string) | Authors of the reference.
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i:book | A book reference.
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i:cofactor | A cofactor.
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i:cofactors | List of cofactors.
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i:comment | A comment on the enzyme entry.
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i:comments | List of comments on the enzyme entry.
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i:deleted | Deleted EC bumber.
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i:ec | The EC number assigned by NC-IUBMB.
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i:edition (in i:book) |
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i:editor (in i:book) |
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i:editorial | The editorial of a book.
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i:enzyme | Enzyme entry.
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i:first_page (type xs:string) |
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i:history (type xs:string) | The history line of the EC number.
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i:journal | A journal reference.
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i:last_page (type xs:string) |
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i:link | Link to other databases.
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i:links | List of links and cross-references to other databases.
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i:medline (in i:journal) | The MedLine id
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i:name (type xs:string) |
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i:note (type xs:string) | The note must specify when/why was the deletion or
transfer, and the destination EC for transferred
entries.
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i:number (in i:patent) | A patent number
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i:patent | A patent related to the enzyme entry.
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i:pubmed (in i:journal) | The PubMed id
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i:reaction | A reaction catalyzed by the enzyme.
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i:reactions | List of reaction(s) catalyzed by the enzyme.
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i:references | Bibliographic references to the enzyme.
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i:synonym | A synonym for the enzyme common name.
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i:synonyms | List of synonyms (if any) of the enzyme.
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i:systematic_name | Systematic name (if any).
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i:title (type xs:string) | Title of the reference.
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i:transferred | Transferred EC bumber.
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i:volume (type xs:string) |
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i:year (type xs:gYear) | Year of publication.
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Complex Type Summary | ||||||||||||
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For now, only a free text and a 'view' attribute.
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A name for the enzyme.
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An enzyme entry.
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Inactive EC number.
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A link to other databases.
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For now, only a free text and a 'view' attribute.
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A bibliographic reference related to the enzyme.
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Data which is only visible in some databases.
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Simple Type Summary | ||||||
Controlled vocabulary for databases.
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The EC four-digit code.
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Qualifier to the enzyme name.
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List of databases with different views of enzyme data.
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Attribute Group Summary | ||||||||||
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<?xml version="1.0" encoding="UTF-8"?> <xs:schema elementFormDefault="qualified" targetNamespace="http://www.ebi.ac.uk/intenz" version="0.2" xmlns:cml="http://www.xml-cml.org/schema/cml2/react" xmlns:i="http://www.ebi.ac.uk/intenz" xmlns:jaxb="http://java.sun.com/xml/ns/jaxb" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"> <!-- Attributes: --> <xs:annotation> <xs:documentation> Database(s) in which data are visible. </xs:documentation> </xs:annotation> </xs:attribute> </xs:attributeGroup> <!-- Simple types: --> <xs:annotation> <xs:documentation>Qualifier to the enzyme name.</xs:documentation> </xs:annotation> <xs:restriction base="xs:string"> <xs:enumeration value="ambiguous"> <xs:annotation> <xs:documentation>Ambiguous</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="incorrect"> <xs:annotation> <xs:documentation>Incorrect</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="misleading"> <xs:annotation> <xs:documentation>Misleading</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="misprint"> <xs:annotation> <xs:documentation>Misprint</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="obsolete"> <xs:annotation> <xs:documentation>Obsolete</xs:documentation> </xs:annotation> </xs:enumeration> </xs:restriction> </xs:simpleType> <xs:annotation> <xs:documentation> List of databases with different views of enzyme data. </xs:documentation> </xs:annotation> <xs:restriction base="xs:string"> <xs:enumeration value="INTENZ"> <xs:annotation> <xs:documentation>IntEnz</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="IUBMB"> <xs:annotation> <xs:documentation> IUBMB </xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="SIB"> <xs:annotation> <xs:documentation> SIB </xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="INTENZ,IUBMB"> <xs:annotation> <xs:documentation> IntEnz and IUBMB </xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="INTENZ,SIB"> <xs:annotation> <xs:documentation> IntEnz and SIB </xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="IUBMB,SIB"> <xs:annotation> <xs:documentation> IUBMB and SIB </xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="INTENZ,IUBMB,SIB"> <xs:annotation> <xs:documentation> IntEnz, IUBMB and SIB </xs:documentation> </xs:annotation> </xs:enumeration> </xs:restriction> </xs:simpleType> <xs:annotation> <xs:documentation>The EC four-digit code.</xs:documentation> </xs:annotation> <xs:restriction base="xs:string"> <xs:pattern value="EC \d+\.\d+\.\d+\.n?\d+"/> </xs:restriction> </xs:simpleType> <xs:annotation> <xs:documentation>Controlled vocabulary for databases.</xs:documentation> </xs:annotation> <xs:restriction base="xs:string"> <xs:enumeration value="BRENDA"> <xs:annotation> <xs:documentation>BRENDA</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="CAS"> <xs:annotation> <xs:documentation>CAS number</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="Diagram"> <xs:annotation> <xs:documentation>Diagram</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="ERGO"> <xs:annotation> <xs:documentation>ERGO</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="ExPASy"> <xs:annotation> <xs:documentation>SIB's ExPASy</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="GO"> <xs:annotation> <xs:documentation>Gene Ontology</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="KEGG ENZYME"> <xs:annotation> <xs:documentation>KEGG ENZYME</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="MEROPS"> <xs:annotation> <xs:documentation>MEROPS</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="MIM"> <xs:annotation> <xs:documentation>MIM</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="NIST 74"> <xs:annotation> <xs:documentation>NIST 74</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="PROSITE"> <xs:annotation> <xs:documentation>PROSITE</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="Rhea"> <xs:annotation> <xs:documentation>Rhea</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="UM-BBD"> <xs:annotation> <xs:documentation>UM-BBD</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="UniProt"> <xs:annotation> <xs:documentation>UniProtKB/Swiss-Prot</xs:documentation> </xs:annotation> </xs:enumeration> <xs:enumeration value="WIT"> <xs:annotation> <xs:documentation>WIT</xs:documentation> </xs:annotation> </xs:enumeration> </xs:restriction> </xs:simpleType> <!-- Complex types: --> <xs:annotation> <xs:documentation>Data which is only visible in some databases.</xs:documentation> </xs:annotation> <xs:sequence> <xs:any maxOccurs="unbounded" minOccurs="0" processContents="skip"> <xs:annotation> <xs:documentation> Any markup is allowed here. </xs:documentation> </xs:annotation> </xs:any> </xs:sequence> </xs:complexType> <xs:annotation> <xs:documentation>A name for the enzyme.</xs:documentation> </xs:annotation> <xs:complexContent> <xs:annotation> <xs:documentation> Qualifier (if any) to this name. </xs:documentation> </xs:annotation> </xs:attribute> </xs:extension> </xs:complexContent> </xs:complexType> <xs:annotation> <xs:documentation> For now, only a free text and a 'view' attribute. </xs:documentation> </xs:annotation> <xs:complexContent> </xs:extension> </xs:complexContent> </xs:complexType> <xs:annotation> <xs:documentation> For now, only a free text and a 'view' attribute. </xs:documentation> </xs:annotation> <xs:complexContent> </xs:extension> </xs:complexContent> </xs:complexType> <xs:annotation> <xs:documentation> A link to other databases. </xs:documentation> </xs:annotation> <xs:complexContent> <xs:annotation> <xs:documentation> Foreign database. </xs:documentation> </xs:annotation> </xs:attribute> <xs:annotation> <xs:documentation> Accession number within the foreign database. </xs:documentation> </xs:annotation> </xs:attribute> <xs:annotation> <xs:documentation> URI pointing to the external entry. </xs:documentation> </xs:annotation> </xs:attribute> <xs:annotation> <xs:documentation> Comment on the link. </xs:documentation> </xs:annotation> </xs:attribute> </xs:extension> </xs:complexContent> </xs:complexType> <xs:annotation> <xs:documentation>A bibliographic reference related to the enzyme.</xs:documentation> </xs:annotation> <xs:sequence> <xs:annotation> <xs:documentation> Authors of the reference. </xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation> Title of the reference. </xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation> Year of publication. </xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> <xs:annotation> <xs:documentation/> </xs:annotation> <xs:complexContent> <xs:sequence> </xs:sequence> </xs:extension> </xs:complexContent> </xs:complexType> <xs:complexContent> <xs:sequence> </xs:sequence> </xs:extension> </xs:complexContent> </xs:complexType> <xs:complexContent> <xs:sequence> <xs:annotation> <xs:documentation> The PubMed id </xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation> The MedLine id </xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:extension> </xs:complexContent> </xs:complexType> <xs:complexContent> <xs:sequence> <xs:annotation> <xs:documentation> A patent number </xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:extension> </xs:complexContent> </xs:complexType> <xs:annotation> <xs:documentation>Inactive EC number.</xs:documentation> </xs:annotation> <xs:sequence> <xs:annotation> <xs:documentation> The note must specify when/why was the deletion or transfer, and the destination EC for transferred entries. </xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> <xs:annotation> <xs:documentation>An enzyme entry.</xs:documentation> </xs:annotation> <xs:sequence> <xs:choice> <xs:sequence> </xs:sequence> </xs:choice> <xs:annotation> <xs:documentation> The history line of the EC number. </xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> <!-- Elements: --> <xs:annotation> <xs:documentation>Enzyme entry.</xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation>The EC number assigned by NC-IUBMB.</xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation>Deleted EC bumber.</xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation>Transferred EC bumber.</xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation>Systematic name (if any).</xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation> The commonly accepted name of the enzyme </xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation>List of synonyms (if any) of the enzyme.</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> </xs:sequence> </xs:complexType> </xs:element> <xs:annotation> <xs:documentation>A synonym for the enzyme common name.</xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation>A reaction catalyzed by the enzyme.</xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation>List of reaction(s) catalyzed by the enzyme.</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:choice maxOccurs="unbounded" minOccurs="1"> </xs:choice> </xs:sequence> </xs:complexType> </xs:element> <xs:annotation> <xs:documentation>A cofactor.</xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation>List of cofactors.</xs:documentation> </xs:annotation> <xs:complexType mixed="true"> <xs:sequence> </xs:sequence> </xs:complexType> </xs:element> <xs:annotation> <xs:documentation>A comment on the enzyme entry.</xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation>List of comments on the enzyme entry.</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> </xs:sequence> </xs:complexType> </xs:element> <xs:annotation> <xs:documentation>Link to other databases.</xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation> List of links and cross-references to other databases. </xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> </xs:sequence> </xs:complexType> </xs:element> <xs:annotation> <xs:documentation>The editorial of a book.</xs:documentation> </xs:annotation> <xs:complexType mixed="true"> <xs:annotation> <xs:documentation> The home town of the editorial </xs:documentation> </xs:annotation> </xs:attribute> </xs:complexType> </xs:element> <xs:annotation> <xs:documentation>A book reference.</xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation>A journal reference.</xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation>A patent related to the enzyme entry.</xs:documentation> </xs:annotation> </xs:element> <xs:annotation> <xs:documentation>Bibliographic references to the enzyme.</xs:documentation> </xs:annotation> <xs:complexType> <xs:choice maxOccurs="unbounded"> </xs:choice> </xs:complexType> </xs:element> </xs:schema> |
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