| Version | Date | Description |
|---|---|---|
| 4.6.0 | 2014-04-28 | New Rhea data model. |
| 4.5.1 | 2013-03-11 | Oracle bug workaround |
| 4.5.0 | 2012-11-30 | IUBMB flag |
| 4.4.9 | 2012-11-05 | Added methods |
| 4.4.8 | 2012-11-01 | Editing deleted/transferred history notes |
| 4.4.7 | 2012-10-03 | Bug fix |
| 4.4.6 | 2012-05-22 | DB objects properly closed. |
| 4.4.5 | 2011-05-20 | Bug fix |
| 4.4.4 | 2011-05-06 | Bug fix |
| 4.4.3 | 2011-03-17 | Dependency update |
| 4.4.2 | 2011-02-09 | Bug fix |
| 4.4.1 | 2011-02-09 | Bug fix |
| 4.4 | 2010-10-07 | Refactored history events |
| 4.3.2 | 2010-04-14 | Getting preliminary ECs |
| 4.3.1 | 2010-03-18 | Bug fix. |
| 4.3 | 2009-09-29 | Preliminary EC numbers. |
| 4.2.1 | 2009-09-01 | Updated dependencies |
| 4.2 | 2009-05-26 | Fixed issue with database cursors limit |
| 4.1 | 2009-05-07 | Loading reactions from Rhea |
| 4.0.5 | 2008-11-10 | Cofactor handling |
| 4.0.4 | 2008-05-30 | Updated dependencies |
| 4.0.3 | 2008-04-22 | Updated dependencies |
| 4.0.2 | 2008-04-15 | Updated dependency |
| 4.0.1 | 2008-03-28 | Updated dependency |
| Type | Changes | By |
|---|---|---|
 | Added methods to EnzymeCofactorMapper to manage compounds (cofactors) independently of Rhea's. | rafalcan |
 | Updated to latest version of parent, intenz-core, rhea-domain and rhea-mapper. | rafalcan |
| Type | Changes | By |
|---|---|---|
 | Modified query to select reactions for enzyme.dat flat file, removing 'FOR UPDATE' which triggers ORA-600 due to a known oracle bug (67496.1 which is only fixed on 11.2). | rafalcan |
| Updated to latest version of rhea-mapper. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Added method HistoryEventMapper.updateEvent to modify history events. | rafalcan |
| Overloaded method EnzymeEntryMapper.findByEc in order to search by EC strings. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Added method HistoryEventMapper.updateEventNote to modify notes of already transferred or deleted entries. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Search by EC number excludes now old versions of modified entries. | rafalcan |
| Removed assertions which just broke completely legal calls in EnzymeSubSubclassMapper. | rafalcan |
| Updated to latest versions of intenz-core, rhea-mapper, rhea-domain, commons-collections, biobabel-db and log4j. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Added close method to EnzymeCofactorMapper, EnzymeEntryMapper and EnzymeReactionMapper to close the underlying Rhea mapper objects. | rafalcan |
| Closing any resultsets and statements, and checking they are not null. | rafalcan |
| Added EnzymeReactionMapper field (instead of creating one each time). | rafalcan |
| Updated to latest intenz-core and rhea-domain. | rafalcan |
| Reuse the same instance of EnzymeReactionMapper in EnzymeEntryMapper. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Generic return type is now especified in EnzymeEntryMapper. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Fixed exception when building a Reaction due to the source being used as the enumeration value instead of the database code. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Updated to latest versions of intenz-core, rhea-domain, rhea-mapper and biobabel-db. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Fixed two NPE in reaction and history mappers. | rafalcan |
| Updated to latest versions of intenz (parent), rhea-domain and rhea-mapper. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Added class HistoryEventMapper which deprecates EventPackageMapper. | rafalcan |
| CommonProceduresMapper: cloning an entry creates a OK/active one instead of SU/inactive. | rafalcan |
| Updated to latest intenz (parent), rhea-domain, rhea-mapper, biobabel-db modules and also log4j. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Added method to search preliminary EC numbers. | rafalcan |
| Updated to latest intenz-core and rhea-mapper modules. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Fixed SQL query to put preliminary EC numbers at the end of the sub-subclass. | rafalcan |
| Removed useless compile-time dependency on oracle classes. | rafalcan |
| Updated to latest intenz-core, rhea-mapper - which implements shared attributes in the family and decompositions -, rhea-domain and biobabel-db. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Added implementation for preliminary EC numbers. | rafalcan |
| Updated to latest intenz-core. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Updated to latest version of rhea.mapper, first available in EBI's public maven repository. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Updated to latest version of rhea.mapper, which fixes bug related to too many open cursors in database connection. | rafalcan |
| Closed result sets in case oracle does not do it after closing the statements. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Reactions with Rhea ID are now loaded from the database in full. | rafalcan |
| Updated to latest version of intenz.core. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Added method to retrieve a list of all compounds acting as cofactors in the database. | rafalcan |
| Added method to update cofactors in order to make global changes of ChEBI mapping. | rafalcan |
| Updated dependencies to latest intenz.core, rhea.mapper and biobabel.db modules. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Updated dependencies to latest rhea.mapper module, to use its new interfaces. | rafalcan |
| Type | Changes | By |
|---|---|---|
| Updated dependencies to latest intenz.core and rhea.mapper modules. The first one avoids unnecessary dependency on BioPAX stuff (jena, jastor). | rafalcan |
