Change log
Release History
| Version | Date | Description |
|---|---|---|
| 1.3.2 | 2014-07-18 | Added DE line exception |
| 1.3.1 | 2014-06-30 | Fixed line formatting. |
| 1.3.0 | 2014-06-13 | New Rhea data model; extended UniProt accessions. |
| 1.2.54 | 2014-02-26 | Added DE line exceptions |
| 1.2.53 | 2014-01-10 | Fixed line formatting. |
| 1.2.52 | 2013-12-20 | Fixed line formatting. |
| 1.2.51 | 2013-11-06 | Added DE line exceptions |
| 1.2.50 | 2013-11-04 | Fixed line formatting. |
| 1.2.49 | 2013-10-30 | Fixed line formatting. |
| 1.2.48 | 2013-08-14 | Fixed line formatting. |
| 1.2.47 | 2013-07-30 | Added DE line exceptions |
| 1.2.46 | 2013-06-19 | Removed extra parentheses |
| 1.2.45 | 2013-05-28 | Fixed flat file formattings |
| 1.2.44 | 2013-05-22 | Added DE line exceptions |
| 1.2.43 | 2013-03-19 | Fixed flat file formattings |
| 1.2.42 | 2013-03-11 | Workaround for oracle bug |
| 1.2.41 | 2013-03-07 | Added DE line exception |
| 1.2.40 | 2013-03-04 | Added DE line exceptions |
| 1.2.39 | 2012-11-30 | Added exception for non-sentence-ending 'sp.' |
| 1.2.38 | 2012-11-07 | Removed DE line exceptions |
| 1.2.37 | 2012-10-01 | Method made public; |
| 1.2.36 | 2012-09-25 | Added exception for non-sentence-ending 'sp.' |
| 1.2.35 | 2012-08-02 | Added exception for non-sentence-ending 'sp.' |
| 1.2.34 | 2012-06-13 | Added DE line exceptions |
| 1.2.33 | 2012-06-06 | Updated enzyme.dat header. |
| 1.2.32 | 2012-05-21 | Added exception for non-sentence-ending 'bv.' |
| 1.2.31 | 2012-05-17 | Added DE line exceptions |
| 1.2.30 | 2012-04-13 | Fixed ExPASy URL |
| 1.2.29 | 2012-04-10 | Added DE line exceptions |
| 1.2.28 | 2012-03-27 | Added DE line exception |
| 1.2.27 | 2012-02-20 | Added exception for non-sentence-ending 'sp.' |
| 1.2.26 | 2012-01-31 | Added DE line exception |
| 1.2.25 | 2012-01-03 | Added DE line exception |
| 1.2.24 | 2011-12-05 | Added DE line exception |
| 1.2.23 | 2011-11-30 | Fixed DE line exceptions |
| 1.2.22 | 2011-11-17 | Fixed side1/side2 representation |
| 1.2.21 | 2011-10-13 | Added DE line exceptions |
| 1.2.20 | 2011-10-11 | Added DE line exceptions |
| 1.2.19 | 2011-08-25 | Added DE line exceptions |
| 1.2.18 | 2011-06-22 | Dependency update |
| 1.2.17 | 2011-06-22 | Bug fix |
| 1.2.16 | 2011-06-01 | Added DE line exception |
| 1.2.15 | 2011-04-12 | Added exception for non-sentence-ending 'sp.' |
| 1.2.14 | 2011-04-07 | Added DE line exception |
| 1.2.13 | 2011-03-17 | Dependencies update |
| 1.2.12 | 2011-03-07 | Added DE line exception |
| 1.2.11 | 2011-03-02 | Added exception for non-sentence-ending 'sp.' |
| 1.2.10 | 2011-02-10 | Removed header paragraph about preliminary ECs |
| 1.2.9 | 2011-02-01 | Added exception for non-sentence-ending 'sp.' |
| 1.2.8 | 2011-01-26 | Added DE line exceptions |
| 1.2.7 | 2010-11-10 | Added DE line exceptions |
| 1.2.6 | 2010-09-06 | Added DE line exception |
| 1.2.5 | 2010-06-28 | Added DE line exception |
| 1.2.4 | 2010-05-07 | Announcing preliminary EC numbers |
| 1.2.3 | 2010-04-12 | Added DE line exceptions |
| 1.2.2 | 2010-03-30 | Update |
| 1.2.1 | 2010-03-18 | Update |
| 1.2 | 2010-01-28 | Moved dependency on mapper |
| 1.1.1 | 2010-01-19 | Added DE line exception |
| 1.1 | 2009-10-08 | Preliminary EC numbers in the flat file |
| 1.0.17 | 2009-09-29 | Updated mapper dependency |
| 1.0.16 | 2009-09-01 | Updated mapper dependency |
| 1.0.15 | 2009-08-04 | Added DE line exceptions |
| 1.0.14 | 2009-06-24 | Added DE line exception |
| 1.0.13 | 2009-05-26 | Updated mapper dependency |
| 1.0.12 | 2009-05-22 | Updated translator dependency |
| 1.0.11 | 2009-05-14 | Updated dependencies |
| 1.0.10 | 2009-04-15 | Added DE line exception |
| 1.0.9 | 2009-03-27 | Updated translator dependency |
| 1.0.8 | 2009-02-26 | Added DE line exception |
| 1.0.7 | 2009-01-26 | Added DE line exception |
| 1.0.6 | 2008-11-17 | Updated dependency |
| 1.0.5 | 2008-08-19 | Updated dependency |
| 1.0.4 | 2008-07-07 | Added DE line exception |
| 1.0.3 | 2008-05-07 | Updated dependency |
| 1.0.2 | 2008-04-22 | Updated dependency |
| 1.0.1 | 2008-03-28 | Updated dependency |
Release 1.3.2 - 2014-07-18
| Type | Changes | By |
|---|---|---|
 | Updated DE_line_modifications with transfer for EC 2.1.3.14. | rafalcan |
Release 1.3.1 - 2014-06-30
| Type | Changes | By |
|---|---|---|
 | Updated CC_LineFormatter with exception for Acinetobacter sp. YAA (non-breaking-line). | rafalcan |
Release 1.3.0 - 2014-06-13
| Type | Changes | By |
|---|---|---|
| Updated to latest versions of intenz-core, intenz-mapper and rhea-domain. | rafalcan |
| Fixed format of flat file to accomodate the new UniProt accessions (now 6 or 10 characters long). | rafalcan |
Release 1.2.54 - 2014-02-26
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 4.2.1.89. | rafalcan |
Release 1.2.53 - 2014-01-10
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with generic exception for subspecies. | rafalcan |
Release 1.2.52 - 2013-12-20
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with exception for pathovar (non-breaking-line). | rafalcan |
Release 1.2.51 - 2013-11-06
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfers for two EC numbers. | rafalcan |
Release 1.2.50 - 2013-11-04
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with exception for Acidianus sp. A1-3 (non-breaking-line). | rafalcan |
Release 1.2.49 - 2013-10-30
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with exception for Streptomyces sp. C5 (non-breaking-line). | rafalcan |
Release 1.2.48 - 2013-08-14
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with exception for Pseudomonas sp. DSM6611 (non-breaking-line). | rafalcan |
Release 1.2.47 - 2013-07-30
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with exception for Burkholderia sp. WS (non-breaking-line). | rafalcan |
| Updated DE_line_modifications with transfers for several EC numbers. | rafalcan |
Release 1.2.46 - 2013-06-19
| Type | Changes | By |
|---|---|---|
| Updated to latest version of intenz-translator - which removes extra parentheses for the text 'Si-specific' - and intenz-core. | rafalcan |
Release 1.2.45 - 2013-05-28
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with exception for Ralstonia sp. U2 (non-breaking-line). | rafalcan |
Release 1.2.44 - 2013-05-22
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfers for several EC numbers. | rafalcan |
Release 1.2.43 - 2013-03-19
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with exception for Pseudomonas sp. Y2 (non-breaking-line). | rafalcan |
| Updated to latest version of intenz-translator which fixes casing of dIDP. | rafalcan |
| Added generics to CC_LineFormatter. | rafalcan |
| Update to latest version of parent. | rafalcan |
Release 1.2.42 - 2013-03-11
| Type | Changes | By |
|---|---|---|
| Updated to latest version of intenz-mapper, which works around an oracle bug, which caused an error during the generation of the enzyme.dat file. | rafalcan |
| Updated CC_LineFormatter with exception for Melissa officinalis L. (non-breaking-line). | rafalcan |
Release 1.2.41 - 2013-03-07
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfers for EC 1.7.3.4 and EC 3.1.7.4. | rafalcan |
Release 1.2.40 - 2013-03-04
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfers for EC 2.1.1.149 and EC 2.3.1.104. | rafalcan |
| Updated to latest version of intenz-core and intenz-mapper. | rafalcan |
Release 1.2.39 - 2012-11-30
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with exception for 'Pseudomonas sp WBC-3'. | rafalcan |
| Updated to latest version of junit. | rafalcan |
Release 1.2.38 - 2012-11-07
| Type | Changes | By |
|---|---|---|
 | Removed a few lines in DE_line_exceptions, whose EC numbers now have been transferred to the proper target. | rafalcan |
| Updated to latest intenz-translator and intenz-mapper. | rafalcan |
Release 1.2.37 - 2012-10-01
| Type | Changes | By |
|---|---|---|
| Method EnzymeFlatFileWriter(EnzymeEntryImpl, Writer) made public. | rafalcan |
| Updated DE_line_modifications with transfers for EC 1.2.3.11, 4.2.1.58, 4.2.1.60, 4.2.1.61 and 6.3.2.27. | rafalcan |
| Updated CC_LineFormatter with exception for 'Pseudomonas sp. AP3' and 'Mycobacterium sp. JS330'. | rafalcan |
Release 1.2.36 - 2012-09-25
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with exception for 'Pseudomonas sp. HZN6', 'Cladosporium sp. G-10' and 'Bradyrhizobium sp. JS329'. | rafalcan |
| Updated to latest versions of intenz-core, intenz-mapper and rhea-domain. | rafalcan |
Release 1.2.35 - 2012-08-02
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with exception for 'Rhodococcus sp. NCIMB 9784'. | rafalcan |
| Updated to latest version of log4j. | rafalcan |
Release 1.2.34 - 2012-06-13
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfers for EC 1.3.99.3. | rafalcan |
| Updated to latest version of intenz-core. | rafalcan |
Release 1.2.33 - 2012-06-06
| Type | Changes | By |
|---|---|---|
| Updated header for the flat file (authors, no phone/fax). | rafalcan |
| Updated to latest versions of intenz-core and intenz-mapper. | rafalcan |
Release 1.2.32 - 2012-05-21
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with exception for 'bv. viciae strain VF39' (EC 2.5.1.98). | rafalcan |
Release 1.2.31 - 2012-05-17
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfers for EC 4.1.99.8 and 4.2.3.14. | rafalcan |
Release 1.2.29 - 2012-04-10
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfers for EC 3.6.1.30. | rafalcan |
Release 1.2.28 - 2012-03-27
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfers for EC 2.7.1.37. | rafalcan |
 | Added configuration for maven-site-plugin (maven 3 style). | rafalcan |
Release 1.2.27 - 2012-02-20
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with exception for 'Mycobacterium sp. DSM 3803'. | rafalcan |
| Updated version of rhea-domain. | rafalcan |
Release 1.2.26 - 2012-01-31
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfers for EC 1.14.1.3 and 1.99.1.13. | rafalcan |
Release 1.2.25 - 2012-01-03
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 1.13.11.44. | rafalcan |
Release 1.2.24 - 2011-12-05
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 1.4.99.3. | rafalcan |
Release 1.2.23 - 2011-11-30
| Type | Changes | By |
|---|---|---|
| Fixed DE_line_modifications for EC 3.4.3.3, EC 3.4.13.3 and EC 3.4.13.13. | rafalcan |
Release 1.2.22 - 2011-11-17
| Type | Changes | By |
|---|---|---|
| Updated to latest intenz-translator, which fixes the double parentheses around "side 1"/"side 2"). | rafalcan |
Release 1.2.21 - 2011-10-13
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 2.1.1.31, 2.1.1.32 and 2.1.1.36. | rafalcan |
Release 1.2.20 - 2011-10-11
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 1.5.1.29 and EC 1.6.8.1. | rafalcan |
| Updated rhea-domain version. | rafalcan |
Release 1.2.19 - 2011-08-25
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 3.4.3.3, EC 3.4.13.3 and EC 3.4.13.13. | rafalcan |
| Updated intenz-core version. | rafalcan |
Release 1.2.18 - 2011-06-22
| Type | Changes | By |
|---|---|---|
| Updated intenz-translator version, which fixes issue with CA lines including aminoacid codes (now they don't go lowercase). | rafalcan |
Release 1.2.17 - 2011-06-22
| Type | Changes | By |
|---|---|---|
| Fixed pattern for line wrapping. | rafalcan |
| Updated rhea-domain version. | rafalcan |
Release 1.2.16 - 2011-06-01
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 2.4.1.130. | rafalcan |
| Updated intenz-mapper version. | rafalcan |
Release 1.2.15 - 2011-04-12
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with exception for 'Pseudomonas sp. CL190' (EC 2.3.1.194). | rafalcan |
Release 1.2.14 - 2011-04-07
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 2.1.1.29. | rafalcan |
Release 1.2.13 - 2011-03-17
| Type | Changes | By |
|---|---|---|
| Updated intenz-core, intenz-mapper and rhea-domain versions. | rafalcan |
Release 1.2.12 - 2011-03-07
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 4.1.2.37 and 4.1.2.39. | rafalcan |
Release 1.2.11 - 2011-03-02
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with exception for 'Pseudomonas sp. T62' (EC 4.3.1.16) and 'Delftia sp. HT23' (EC 4.3.1.27). | rafalcan |
Release 1.2.10 - 2011-02-10
| Type | Changes | By |
|---|---|---|
| Removed header paragraph about preliminary ECs. | rafalcan |
| Updated to latest versions of dependencies (intenz, intenz-mapper, rhea-domain and ojdbc5). | rafalcan |
Release 1.2.9 - 2011-02-01
| Type | Changes | By |
|---|---|---|
| Updated CC_LineFormatter with exception for 'sp. CBB1' (EC 1.17.5.2). | rafalcan |
Release 1.2.8 - 2011-01-26
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfers for EC 1.1.1.5, 2.1.1.51 and 2.1.1.52. | rafalcan |
| Added new exception for 'sp.' as a non-ending word in a sentence for CC lines. | rafalcan |
| Updated dependencies on intenz (parent), intenz-mapper and log4j. | rafalcan |
Release 1.2.7 - 2010-11-10
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 2.5.1.11 and 2.5.1.33. | rafalcan |
| Updated dependencies on intenz (parent) and intenz-mapper. | rafalcan |
Release 1.2.6 - 2010-09-06
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 2.1.1.48. | rafalcan |
Release 1.2.5 - 2010-06-28
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfers for EC 2.1.1.73 and EC 1.1.99.8. | rafalcan |
| Updated dependency on intenz (parent). | rafalcan |
Release 1.2.4 - 2010-05-07
| Type | Changes | By |
|---|---|---|
| Added a note in the header of enzyme.dat about the introduction of preliminary EC numbers. | rafalcan |
| Updated dependencies on intenz-mapper and rhea-domain. | rafalcan |
Release 1.2.3 - 2010-04-12
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfers for some preliminary EC numbers. | rafalcan |
Release 1.2.1 - 2010-03-18
| Type | Changes | By |
|---|---|---|
| Updated to latest versions of parent, intenz-core and intenz-mapper - which fixes a bug in the order of EC numbers, preliminary go at the end of the sub-subclass now. | rafalcan |
Release 1.2 - 2010-01-28
| Type | Changes | By |
|---|---|---|
| The dependency on intenz-mapper has been moved to the apps profile, as it is only used by the standalone application which writes enzyme.dat. | rafalcan |
Release 1.1.1 - 2010-01-19
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 1.5.3.11. | rafalcan |
Release 1.0.17 - 2009-09-29
| Type | Changes | By |
|---|---|---|
| Updated dependency to latest mapper module, which cascades to a newer biobabel-core version, which allows validation of preliminary EC numbers. | rafalcan |
| Delegating EC number validation on biobabel-core module. | rafalcan |
Release 1.0.15 - 2009-08-04
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with fixes for many transferred/deleted entries (inconsistencies in IUBMB's notes). | rafalcan |
Release 1.0.14 - 2009-06-24
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 1.8.4.5. | rafalcan |
Release 1.0.13 - 2009-05-26
| Type | Changes | By |
|---|---|---|
| Updated dependency to latest mapper module, which fixes a bug related to database cursors limit exceeded. | rafalcan |
Release 1.0.12 - 2009-05-22
| Type | Changes | By |
|---|---|---|
| Updated dependency to latest translator module, which fixes a bug related to not-hiding protons (EC 4.1.1.39). | rafalcan |
Release 1.0.11 - 2009-05-14
| Type | Changes | By |
|---|---|---|
| Updated dependencies to mapper and translator modules (the latter fixes a bug related to hiding protons). | rafalcan |
Release 1.0.10 - 2009-04-15
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 1.4.3.6. | rafalcan |
Release 1.0.9 - 2009-03-27
| Type | Changes | By |
|---|---|---|
| Updated dependency to translator module v1.0.3, which fixes a bug. | rafalcan |
Release 1.0.8 - 2009-02-26
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 1.1.2.1. | rafalcan |
Release 1.0.7 - 2009-01-26
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 3.2.1.110. | rafalcan |
Release 1.0.6 - 2008-11-17
| Type | Changes | By |
|---|---|---|
| Updated dependency to latest translator module which fixes a spelling bug. | rafalcan |
Release 1.0.4 - 2008-07-07
| Type | Changes | By |
|---|---|---|
| Updated DE_line_modifications with transfer for EC 2.5.1.64. | rafalcan |
| Fixed URLs for Prosite and UniProt links. | rafalcan |
Release 1.0.3 - 2008-05-07
| Type | Changes | By |
|---|---|---|
| Updated dependency to latest translator module which fixes some spelling issues. | rafalcan |