compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

Dependency Tree

• uk.ac.ebi.intenz:intenz-export:jar:1.4.1

  IntEnz export module
  Description: Module to export IntEnz in different formats URL: http://intenz.sf.net/intenz-export Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.intenz:intenz-core:jar:4.3.3 (compile)

    IntEnz core module
    Description: IntEnz - Core package URL: http://intenz.sf.net/intenz-core Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.xchars:xchars:jar:1.2.6 (compile)

      XChars Java package
      Description: Java package for Special Characters handling. URL: http://intenz.sf.net/xchars/core Project License: No license is defined for this project.

    • uk.ac.ebi.xchars:xchars-config:jar:1.0.3 (compile)

      XChars configuration
      Description: Allows encoding/decoding of Special Characters. URL: http://intenz.sf.net/xchars/config Project License: No license is defined for this project.

    • commons-collections:commons-collections:jar:3.2.1 (compile)

      Commons Collections
      Description: Types that extend and augment the Java Collections Framework. URL: http://commons.apache.org/collections/ Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.intenz:intenz-mapper:jar:4.6.0 (compile)

    IntEnz mapper module
    Description: IntEnz - Mapper package URL: http://intenz.sf.net/intenz-mapper Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.intenz:intenz-translator:jar:1.0.12 (compile)

    IntEnz translator
    Description: Module to translate properly the XML-encoded (xchars) data into enzyme.dat-friendly text. URL: http://intenz.sf.net/intenz-translator Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.intenz:intenz-biopax:jar:1.0.6 (compile)

    BioPAX for IntEnz
    Description: BioPAX module for IntEnz URL: http://intenz.sf.net/intenz-biopax Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.rhea:rhea-biopax:jar:1.4.8 (compile)

      Biopax
      Description: Module to read/write BioPAX data in OWL format. URL: http://rhea-ebi.sf.net/rhea-biopax Project License: The Apache Software License, Version 2.0

      • org.biopax.paxtools:paxtools-core:jar:4.2.0 (compile)

        paxtools-core
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • net.sourceforge.collections:collections-generic:jar:4.01 (compile)

          larvalabs collections
          Description: There is currently no description associated with this project. URL: http://collections.sourceforge.net Project License: Apache License V2.0

        • commons-logging:commons-logging:jar:1.1.1 (compile)

          Commons Logging
          Description: Commons Logging is a thin adapter allowing configurable bridging to other, well known logging systems. URL: http://commons.apache.org/logging Project License: The Apache Software License, Version 2.0

      • org.biopax.paxtools:paxtools-jena-io:jar:4.2.0 (compile)

        paxtools-jena-io
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • com.hp.hpl.jena:jena:jar:2.5.7 (compile)

          Jena
          Description: Jena is a Java framework for building Semantic Web applications. It provides a programmatic environment for RDF, RDFS and OWL, SPARQL and includes a rule-based inference engine. URL: http://jena.sourceforge.net/ Project License: BSD

          • com.hp.hpl.jena:arq:jar:2.6.0 (compile)

            ARQ
            Description: ARQ is a query engine for Jena that supports the SPARQL RDF Query language. SPARQL is the query language developed by the W3C RDF Data Access Working Group. URL: http://jena.sourceforge.net/ARQ/ Project License: BSD

            • stax:stax-api:jar:1.0 (compile)

              stax-api
              Description: There is currently no description associated with this project. Project License: No license is defined for this project.

            • woodstox:wstx-asl:jar:3.0.0 (compile)

              wstx-asl
              Description: There is currently no description associated with this project. Project License: No license is defined for this project.

            • com.hp.hpl.jena:json-jena:jar:1.0 (compile)

              json-jena
              Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • com.hp.hpl.jena:iri:jar:0.5 (compile)

            IRI
            Description: An implementation of RFC 3987 (IRI) and RFC 3986 (URI) URL: http://jena.sourceforge.net/ Project License: BSD

          • com.hp.hpl.jena:concurrent-jena:jar:1.3.2 (compile)

            concurrent-jena
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • com.ibm.icu:icu4j:jar:3.4.4 (compile)

            ICU4J
            Description: The International Component for Unicode (ICU) is a mature, portable set of C/C++ and Java libraries for Unicode support, software internationalization (I18N) and globalization (G11N), giving applications the same results on all platforms. URL: http://www-306.ibm.com/software/globalization/icu/ Project License: ICU License

          • xerces:xmlParserAPIs:jar:2.0.2 (compile)

            xmlParserAPIs
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • uk.ac.ebi.intenz:intenz-xml:jar:1.1.2 (compile)

    IntEnzXML
    Description: XML format for IntEnz. URL: http://intenz.sf.net/intenz-xml Project License: No license is defined for this project.

    • org.cml:cml-react:jar:2.0 (compile)

      CML-React
      Description: Chemical Markup Language for reactions URL: http://www.xml-cml.org Project License: No license is defined for this project.

  • uk.ac.ebi.intenz:intenz-database:jar:1.1.5 (compile)

    IntEnz database
    Description: IntEnz database scripts and utilities. URL: http://intenz.sf.net/intenz-database Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.rhea:rhea-domain:jar:1.8.1 (compile)

    Domain model
    Description: The domain model of Rhea. URL: http://rhea-ebi.sf.net/rhea-domain Project License: Creative Commons Attribution (CC BY) 3.0

    • uk.ac.ebi.xchars:xchars-taglib:jar:1.0.2 (compile)

      XChars tag library
      Description: Tag library to make special characters transformations from JSPs. URL: http://intenz.sf.net/xchars/taglib Project License: No license is defined for this project.

    • uk.ac.ebi.biobabel:biobabel-citations:jar:2.0.1 (compile)

      Citations utilities
      Description: A module to handle citations from CiteXplore. URL: http://intenz.sf.net/biobabel/biobabel-citations Project License: No license is defined for this project.

      • com.sun.xml.ws:jaxws-tools:jar:2.1.4 (compile)

        JAX-WS (JSR-224) Reference Implementation Tools
        Description: Open source Reference Implementation of JSR-224: Java API for XML Web Services URL: https://jax-ws.dev.java.net// Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0GPLv2 with classpath exception

        • com.sun.xml.ws:jaxws-rt:jar:2.1.4 (compile)

          JAX-WS (JSR-224) Reference Implementation
          Description: Open source Reference Implementation of JSR-224: Java API for XML Web Services URL: https://jax-ws.dev.java.net// Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0GPLv2 with classpath exception

          • com.sun.xml.bind:jaxb-impl:jar:2.1.7 (compile)

            jaxb-impl
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • com.sun.xml.stream.buffer:streambuffer:jar:0.7 (compile)

            streambuffer
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • com.sun.xml.stream:sjsxp:jar:1.0.1 (compile)

            sjsxp
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • org.jvnet.staxex:stax-ex:jar:1.2 (compile)

            Extended StAX API
            Description: Extensions to JSR-173 StAX API. URL: https://stax-ex.dev.java.net/ Project License: Common Development And Distribution License (CDDL) Version 1.0

          • com.sun.org.apache.xml.internal:resolver:jar:20050927 (compile)

            resolver
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • org.jvnet:mimepull:jar:1.2 (compile)

            MIME streaming extension
            Description: Provides a streaming API to access attachments parts in a MIME message. Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0GPLv2 with classpath exception

        • com.sun.xml.bind:jaxb-xjc:jar:2.1.7 (compile)

          jaxb-xjc
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • javax.xml.ws:jaxws-api:jar:2.1-1 (compile)

        jaxws-api
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    • commons-lang:commons-lang:jar:2.5 (compile)

      Commons Lang
      Description: Commons Lang, a package of Java utility classes for the classes that are in java.lang's hierarchy, or are considered to be so standard as to justify existence in java.lang. URL: http://commons.apache.org/lang/ Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.rhea:rhea-mapper:jar:3.8.2 (compile)

    Mapper
    Description: Interfaces for mapping domain objects to a data source. Implementations for JDBC and web service are included. URL: http://rhea-ebi.sf.net/rhea-mapper Project License: The Apache Software License, Version 2.0

    • org.apache.lucene:lucene-core:jar:3.0.2 (compile)

      Lucene Core
      Description: Apache Lucene Java Core URL: http://lucene.apache.org/java/lucene-core Project License: Apache 2

    • uk.ac.ebi.biobabel:biobabel-lucene:jar:1.0.6 (compile)

      Lucene module
      Description: Biobabel utilities for Lucene. URL: http://intenz.sf.net/biobabel/biobabel-lucene Project License: No license is defined for this project.

    • uk.ac.ebi.chebi.utilities.structure.transformer:chebi-structure-transformer:jar:1.4.2 (compile)

      ChEBI Structures Transformer
      Description: There is currently no description associated with this project. URL: /chebi-prg/chebi-utilities/chebi-structure/chebi-structure-transformer Project License: No license is defined for this project.

      • uk.ac.ebi.chebi.model:chebi-model:jar:1.7 (compile)

        ChEBI Domain Model
        Description: ChEBI domain model URL: /chebi-prg/chebi-model Project License: No license is defined for this project.

      • chemaxon.marvin:MarvinBeans:jar:5.1.0 (compile)

        MarvinBeans
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    • uk.ac.ebi.chebi.webapps.chebiWS.client:chebiWS-client:jar:2.0 (compile)

      ChEBI Public Web Services Client
      Description: The public Web Services client mostly auto-generated from JAX-WS. Project License: No license is defined for this project.

      • com.sun.xml.messaging.saaj:saaj-impl:jar:1.3.2 (compile)

        saaj-impl
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • javax.xml.soap:saaj-api:jar:1.3 (compile)

          SOAP with Attachments API Package
          Description: There is currently no description associated with this project. URL: http://java.sun.com/webservices/saaj/index.jsp Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0

  • uk.ac.ebi.rhea:rhea-cml:jar:1.0.3 (compile)

    Rhea CML
    Description: A module to export Rhea reactions as CML-React. URL: http://rhea-ebi.sf.net/rhea-cml Project License: The Apache Software License, Version 2.0

    • commons-pool:commons-pool:jar:1.6 (compile)

      Commons Pool
      Description: Commons Object Pooling Library URL: http://commons.apache.org/pool/ Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.biobabel:biobabel-core:jar:0.18 (compile)

    Core Utility Modules
    Description: The Biobabel Utility Core Modules. URL: http://intenz.sf.net/biobabel/biobabel-core Project License: No license is defined for this project.

  • uk.ac.ebi.biobabel:biobabel-db:jar:1.3.7 (compile)

    Database utilities
    Description: A module with database utilities. URL: http://intenz.sf.net/biobabel/biobabel-db Project License: No license is defined for this project.

    • org.antlr:antlr:jar:3.0.1 (compile)

      AntLR Parser Generator
      Description: A framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions. URL: http://antlr.org/ Project License: BSD licence

      • org.antlr:stringtemplate:jar:3.1-b1 (compile)

        StringTemplate Template Engine
        Description: StringTemplate is a java template engine (with ports for C# and Python) for generating source code, web pages, emails, or any other formatted text output. URL: http://www.stringtemplate.org Project License: BSD licence

      • antlr:antlr:jar:2.7.7 (compile)

        AntLR Parser Generator
        Description: A framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions. URL: http://www.antlr.org/ Project License: BSD License

  • commons-cli:commons-cli:jar:1.2 (compile)

    Commons CLI
    Description: Commons CLI provides a simple API for presenting, processing and validating a command line interface. URL: http://commons.apache.org/cli/ Project License: The Apache Software License, Version 2.0

  • org.apache.velocity:velocity:jar:1.7 (compile)

    Apache Velocity
    Description: Apache Velocity is a general purpose template engine. URL: http://velocity.apache.org/engine/devel/ Project License: The Apache Software License, Version 2.0

  • log4j:log4j:jar:1.2.17 (compile)

    Apache Log4j
    Description: Apache Log4j 1.2 URL: http://logging.apache.org/log4j/1.2/ Project License: The Apache Software License, Version 2.0

  • xerces:xercesImpl:jar:2.9.1 (compile)

    Xerces2 Java Parser

    Description: Xerces2 is the next generation of high performance, fully compliant XML parsers in the Apache Xerces family. This new version of Xerces introduces the Xerces Native Interface (XNI), a complete framework for building parser components and configurations that is extremely modular and easy to program. URL: http://xerces.apache.org/xerces2-j Project License: The Apache Software License, Version 2.0

    • xml-apis:xml-apis:jar:1.3.04 (compile)

      XML Commons External Components XML APIs

      Description: xml-commons provides an Apache-hosted set of DOM, SAX, and JAXP interfaces for use in other xml-based projects. Our hope is that we can standardize on both a common version and packaging scheme for these critical XML standards interfaces to make the lives of both our developers and users easier. The External Components portion of xml-commons contains interfaces that are defined by external standards organizations. For DOM, that's the W3C; for SAX it's David Megginson and sax.sourceforge.net; for JAXP it's Sun. URL: http://xml.apache.org/commons/components/external/ Project License: The Apache Software License, Version 2.0

  • javax.mail:mail:jar:1.4.3 (compile)

    JavaMail API
    Description: JavaMail API URL: http://java.sun.com/projects/javamail/mail Project License: CDDLGPLv2+CE

    • javax.activation:activation:jar:1.1 (compile)

      JavaBeans Activation Framework (JAF)

      Description: JavaBeans Activation Framework (JAF) is a standard extension to the Java platform that lets you take advantage of standard services to: determine the type of an arbitrary piece of data; encapsulate access to it; discover the operations available on it; and instantiate the appropriate bean to perform the operation(s). URL: http://java.sun.com/products/javabeans/jaf/index.jsp Project License: Common Development and Distribution License (CDDL) v1.0

  • org.sitemaps:sitemaps:jar:0.9 (compile)

    sitemaps
    Description: JAXB-generated package to handle Google sitemaps XML files. URL: http://www.sitemaps.org Project License: No license is defined for this project.

    • javax.xml.bind:jaxb-api:jar:2.1 (compile)

      jaxb-api
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • javax.xml.stream:stax-api:jar:1.0-2 (compile)

        Streaming API for XML
        Description: StAX is a standard XML processing API that allows you to stream XML data from and to your application. Project License: GNU General Public LibraryCOMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0

  • org.glassfish:javax.json:jar:1.0.2 (compile)

    JSR 353 (JSON Processing) Default Provider
    Description: Default provider for JSR 353:Java API for Processing JSON URL: http://jsonp.java.net Project License: Dual license consisting of the CDDL v1.1 and GPL v2

  • junit:junit:jar:4.8.2 (test)

    JUnit
    Description: JUnit is a regression testing framework. It is used by the developer who implements unit tests in Java. URL: http://junit.org Project License: Common Public License Version 1.0

  • com.oracle:ojdbc5:jar:11.1.0.7.0 (test)

    ojdbc5
    Description: There is currently no description associated with this project. Project License: No license is defined for this project.