The following document contains the results of Checkstyle. 
| Rules | Violations | Severity |
|---|---|---|
JavadocPackage
| 2 |  Error |
| NewlineAtEndOfFile | 0 | Error |
| Translation | 0 | Error |
| FileLength | 0 | Error |
FileTabCharacter
| 36 | Error |
RegexpSingleline
| 7 | Error |
| JavadocMethod | 28 | Error |
| JavadocType | 0 | Error |
| JavadocVariable | 5 | Error |
| JavadocStyle | 0 | Error |
| ConstantName | 0 | Error |
| LocalFinalVariableName | 0 | Error |
| LocalVariableName | 0 | Error |
| MemberName | 0 | Error |
| MethodName | 0 | Error |
| PackageName | 0 | Error |
| ParameterName | 0 | Error |
| StaticVariableName | 4 | Error |
| TypeName | 0 | Error |
| AvoidStarImport | 1 | Error |
| IllegalImport | 0 | Error |
| RedundantImport | 1 | Error |
| UnusedImports | 2 | Error |
| LineLength | 89 | Error |
| MethodLength | 2 | Error |
| ParameterNumber | 0 | Error |
| EmptyForIteratorPad | 1 | Error |
| MethodParamPad | 9 | Error |
| NoWhitespaceAfter | 0 | Error |
| NoWhitespaceBefore | 0 | Error |
| OperatorWrap | 2 | Error |
| ParenPad | 55 | Error |
| TypecastParenPad | 0 | Error |
| WhitespaceAfter | 0 | Error |
| WhitespaceAround | 17 | Error |
| ModifierOrder | 0 | Error |
| RedundantModifier | 0 | Error |
| AvoidNestedBlocks | 0 | Error |
| EmptyBlock | 0 | Error |
| LeftCurly | 0 | Error |
| NeedBraces | 13 | Error |
| RightCurly | 0 | Error |
| AvoidInlineConditionals | 3 | Error |
| EmptyStatement | 0 | Error |
| EqualsHashCode | 0 | Error |
| HiddenField | 0 | Error |
| IllegalInstantiation | 0 | Error |
| InnerAssignment | 0 | Error |
| MagicNumber | 39 | Error |
| MissingSwitchDefault | 0 | Error |
| RedundantThrows | 0 | Error |
| SimplifyBooleanExpression | 0 | Error |
| SimplifyBooleanReturn | 0 | Error |
| DesignForExtension | 0 | Error |
| FinalClass | 3 | Error |
| HideUtilityClassConstructor | 4 | Error |
| InterfaceIsType | 0 | Error |
| VisibilityModifier | 0 | Error |
| ArrayTypeStyle | 0 | Error |
| FinalParameters | 35 | Error |
| TodoComment | 0 | Error |
| UpperEll | 0 | Error |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| Unused import - uk.ac.ebi.intenz.domain.enzyme.EnzymeCommissionNumber. | 5 |
| Unused import - uk.ac.ebi.rhea.domain.Status. | 6 |
| Using the '.*' form of import should be avoided - java.sql.*. | 9 |
| Line is longer than 80 characters (found 120). | 16 |
| Utility classes should not have a public or default constructor. | 21 |
| Line contains a tab character. | 23 |
| Missing a Javadoc comment. | 23 |
| Line has trailing spaces. | 24 |
| Line contains a tab character. | 24 |
| Missing a Javadoc comment. | 25 |
| Line is longer than 80 characters (found 88). | 26 |
| Line contains a tab character. | 27 |
| Missing a Javadoc comment. | 35 |
| Name 'DELETE_ALL' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 35 |
| Missing a Javadoc comment. | 37 |
| Line is longer than 80 characters (found 89). | 38 |
| Line contains a tab character. | 45 |
| Parameter args should be final. | 47 |
| '{' is not preceded with whitespace. | 49 |
| Line is longer than 80 characters (found 82). | 59 |
| '{' is not preceded with whitespace. | 63 |
| '3' is a magic number. | 65 |
| '{' is not preceded with whitespace. | 69 |
| '4' is a magic number. | 71 |
| Line contains a tab character. | 76 |
| 'if' construct must use '{}'s. | 83 |
| 'if' construct must use '{}'s. | 84 |
| '5' is a magic number. | 88 |
| Line contains a tab character. | 103 |
| Line contains a tab character. | 106 |
| Line contains a tab character. | 107 |
| Line contains a tab character. | 108 |
| '?' is not preceded with whitespace. | 108 |
| Avoid inline conditionals. | 108 |
| Line contains a tab character. | 109 |
| Line contains a tab character. | 110 |
| Line contains a tab character. | 113 |
| '3' is a magic number. | 114 |
| '4' is a magic number. | 115 |
| 'if' construct must use '{}'s. | 130 |
| 'if' construct must use '{}'s. | 131 |
| Violation | Message | Line |
|---|---|---|
| Utility classes should not have a public or default constructor. | 40 |
| Line contains a tab character. | 42 |
| Missing a Javadoc comment. | 42 |
| Line has trailing spaces. | 43 |
| Line contains a tab character. | 43 |
| Name 'FIND_ALL' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 51 |
| Line contains a tab character. | 52 |
| Line contains a tab character. | 53 |
| Line contains a tab character. | 54 |
| Line is longer than 80 characters (found 84). | 55 |
| Line contains a tab character. | 55 |
| Line contains a tab character. | 56 |
| Line contains a tab character. | 57 |
| Line contains a tab character. | 58 |
| Line contains a tab character. | 59 |
| Line contains a tab character. | 60 |
| Missing a Javadoc comment. | 62 |
| Name 'DELETE_ALL' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 62 |
| Missing a Javadoc comment. | 64 |
| Name 'INSERT' must match pattern '^[a-z][a-zA-Z0-9]*$'. | 64 |
| Line contains a tab character. | 65 |
| Line contains a tab character. | 66 |
| Line contains a tab character. | 67 |
| Line contains a tab character. | 68 |
| Line has trailing spaces. | 69 |
| Line has trailing spaces. | 70 |
| Line has trailing spaces. | 73 |
| Method length is 230 lines (max allowed is 150). | 75 |
| Parameter args should be final. | 75 |
| '{' is not preceded with whitespace. | 78 |
| '{' is not preceded with whitespace. | 92 |
| '3' is a magic number. | 94 |
| Line is longer than 80 characters (found 89). | 102 |
| '4' is a magic number. | 106 |
| Line is longer than 80 characters (found 82). | 116 |
| 'if' construct must use '{}'s. | 118 |
| 'if' construct must use '{}'s. | 119 |
| '5' is a magic number. | 123 |
| Line contains a tab character. | 127 |
| Line is longer than 80 characters (found 84). | 132 |
| Line is longer than 80 characters (found 117). | 155 |
| Line is longer than 80 characters (found 95). | 161 |
| 'if' construct must use '{}'s. | 162 |
| Line is longer than 80 characters (found 90). | 162 |
| 'if' is not followed by whitespace. | 162 |
| '3' is a magic number. | 163 |
| '4' is a magic number. | 164 |
| '5' is a magic number. | 165 |
| '6' is a magic number. | 166 |
| '7' is a magic number. | 167 |
| Line is longer than 80 characters (found 83). | 179 |
| Line is longer than 80 characters (found 87). | 183 |
| Line is longer than 80 characters (found 105). | 190 |
| '3' is a magic number. | 196 |
| '4' is a magic number. | 197 |
| '5' is a magic number. | 198 |
| '6' is a magic number. | 199 |
| '7' is a magic number. | 200 |
| Line is longer than 80 characters (found 82). | 213 |
| Line is longer than 80 characters (found 83). | 220 |
| Line is longer than 80 characters (found 111). | 221 |
| '3' is a magic number. | 227 |
| '4' is a magic number. | 228 |
| '5' is a magic number. | 229 |
| '6' is a magic number. | 230 |
| '7' is a magic number. | 231 |
| Line is longer than 80 characters (found 90). | 244 |
| '3' is a magic number. | 250 |
| Line is longer than 80 characters (found 97). | 252 |
| Line is longer than 80 characters (found 117). | 253 |
| '3' is a magic number. | 259 |
| '4' is a magic number. | 260 |
| '5' is a magic number. | 261 |
| '6' is a magic number. | 262 |
| '7' is a magic number. | 263 |
| 'if' construct must use '{}'s. | 285 |
| 'if' construct must use '{}'s. | 286 |
| 'if' construct must use '{}'s. | 287 |
| '1000' is a magic number. | 302 |
| Missing a Javadoc comment. | 306 |
| Parameter xml should be final. | 306 |
| '4000' is a magic number. | 309 |
| '4000' is a magic number. | 310 |
| '4000' is a magic number. | 311 |
| Missing a Javadoc comment. | 318 |
| Parameter seconds should be final. | 318 |
| '3599' is a magic number. | 321 |
| '3600' is a magic number. | 322 |
| '3600' is a magic number. | 324 |
| '59' is a magic number. | 326 |
| '60' is a magic number. | 327 |
| '60' is a magic number. | 329 |
| Violation | Message | Line |
|---|---|---|
| Missing package-info.java file. | 0 |
| Class EnzymeClassHelper should be declared as final. | 13 |
| Line is longer than 80 characters (found 83). | 15 |
| Missing a Javadoc comment. | 17 |
| '{' is not followed by whitespace. | 17 |
| '}' is not preceded with whitespace. | 17 |
| Line is longer than 80 characters (found 83). | 19 |
| Missing a Javadoc comment. | 19 |
| Parameter enzymeClass should be final. | 19 |
| Parameter encoding should be final. | 19 |
| Line is longer than 80 characters (found 92). | 33 |
| Line is longer than 80 characters (found 121). | 39 |
| Line is longer than 80 characters (found 99). | 44 |
| Line is longer than 80 characters (found 128). | 50 |
| Missing a Javadoc comment. | 114 |
| Parameter text should be final. | 114 |
| Violation | Message | Line |
|---|---|---|
| Utility classes should not have a public or default constructor. | 25 |
| Line is longer than 80 characters (found 108). | 27 |
| Missing a Javadoc comment. | 27 |
| '(' is preceded with whitespace. | 27 |
| Parameter enzymeEntry should be final. | 27 |
| Parameter encoding should be final. | 27 |
| Parameter view should be final. | 27 |
| Parameter intenzTextXML should be final. | 28 |
| Line is longer than 80 characters (found 111). | 29 |
| '(' is followed by whitespace. | 29 |
| ')' is preceded with whitespace. | 29 |
| '?' should be on a new line. | 30 |
| Avoid inline conditionals. | 30 |
| Line is longer than 80 characters (found 81). | 31 |
| Line contains a tab character. | 31 |
| '?' should be on a new line. | 33 |
| Avoid inline conditionals. | 33 |
| Line contains a tab character. | 34 |
| Line is longer than 80 characters (found 108). | 38 |
| Missing a Javadoc comment. | 38 |
| '(' is preceded with whitespace. | 38 |
| Parameter enzymeEntry should be final. | 38 |
| Parameter encoding should be final. | 38 |
| 'if' construct must use '{}'s. | 49 |
| '(' is followed by whitespace. | 49 |
| ')' is preceded with whitespace. | 49 |
| '(' is followed by whitespace. | 51 |
| ')' is preceded with whitespace. | 51 |
| '(' is followed by whitespace. | 53 |
| ')' is preceded with whitespace. | 53 |
| Line is longer than 80 characters (found 106). | 59 |
| Line is longer than 80 characters (found 122). | 63 |
| Line is longer than 80 characters (found 95). | 67 |
| Line is longer than 80 characters (found 89). | 69 |
| 'if' construct must use '{}'s. | 70 |
| Line is longer than 80 characters (found 107). | 70 |
| '(' is followed by whitespace. | 70 |
| ')' is preceded with whitespace. | 70 |
| Line is longer than 80 characters (found 81). | 72 |
| Line is longer than 80 characters (found 110). | 75 |
| Line is longer than 80 characters (found 81). | 138 |
| Line is longer than 80 characters (found 99). | 146 |
| Method length is 219 lines (max allowed is 150). | 146 |
| Missing a Javadoc comment. | 146 |
| '(' is preceded with whitespace. | 146 |
| Parameter enzymeEntry should be final. | 146 |
| Parameter encoding should be final. | 146 |
| Parameter view should be final. | 147 |
| Line is longer than 80 characters (found 95). | 164 |
| 'if' construct must use '{}'s. | 167 |
| Line is longer than 80 characters (found 107). | 167 |
| '(' is followed by whitespace. | 167 |
| ')' is preceded with whitespace. | 167 |
| Line is longer than 80 characters (found 81). | 169 |
| Line is longer than 80 characters (found 110). | 172 |
| '(' is followed by whitespace. | 181 |
| ')' is preceded with whitespace. | 181 |
| '(' is followed by whitespace. | 182 |
| ')' is preceded with whitespace. | 182 |
| Line contains a tab character. | 184 |
| Line contains a tab character. | 185 |
| '{' is not preceded with whitespace. | 185 |
| Line contains a tab character. | 186 |
| Line contains a tab character. | 187 |
| Line is longer than 80 characters (found 105). | 194 |
| '{' is not preceded with whitespace. | 196 |
| '(' is followed by whitespace. | 205 |
| ')' is preceded with whitespace. | 205 |
| '(' is followed by whitespace. | 208 |
| ')' is preceded with whitespace. | 208 |
| Line is longer than 80 characters (found 122). | 210 |
| Line contains a tab character. | 210 |
| Line is longer than 80 characters (found 86). | 212 |
| Line is longer than 80 characters (found 98). | 216 |
| '{' is not preceded with whitespace. | 224 |
| Line is longer than 80 characters (found 115). | 225 |
| '{' is not preceded with whitespace. | 229 |
| Line is longer than 80 characters (found 110). | 232 |
| '(' is followed by whitespace. | 238 |
| ')' is preceded with whitespace. | 238 |
| '(' is followed by whitespace. | 239 |
| ')' is preceded with whitespace. | 239 |
| Line is longer than 80 characters (found 94). | 242 |
| '(' is followed by whitespace. | 243 |
| ')' is preceded with whitespace. | 243 |
| '(' is followed by whitespace. | 247 |
| ')' is preceded with whitespace. | 247 |
| '(' is followed by whitespace. | 251 |
| ')' is preceded with whitespace. | 251 |
| Line is longer than 80 characters (found 106). | 258 |
| '(' is followed by whitespace. | 259 |
| ')' is preceded with whitespace. | 259 |
| '(' is followed by whitespace. | 263 |
| ')' is preceded with whitespace. | 263 |
| '(' is followed by whitespace. | 267 |
| ')' is preceded with whitespace. | 267 |
| '(' is followed by whitespace. | 280 |
| ')' is preceded with whitespace. | 280 |
| '(' is followed by whitespace. | 281 |
| ')' is preceded with whitespace. | 281 |
| '(' is followed by whitespace. | 283 |
| ')' is preceded with whitespace. | 283 |
| Line is longer than 80 characters (found 104). | 285 |
| Line is longer than 80 characters (found 116). | 289 |
| '(' is followed by whitespace. | 298 |
| ')' is preceded with whitespace. | 298 |
| '(' is followed by whitespace. | 299 |
| ';' is followed by whitespace. | 299 |
| Line is longer than 80 characters (found 82). | 300 |
| Line contains a tab character. | 300 |
| '(' is followed by whitespace. | 315 |
| ')' is preceded with whitespace. | 315 |
| Line is longer than 80 characters (found 106). | 319 |
| '(' is followed by whitespace. | 322 |
| ')' is preceded with whitespace. | 322 |
| Line is longer than 80 characters (found 98). | 359 |
| Missing a Javadoc comment. | 367 |
| '(' is preceded with whitespace. | 367 |
| Parameter text should be final. | 367 |
| Violation | Message | Line |
|---|---|---|
| Redundant import from the same package - uk.ac.ebi.intenz.tools.release.helper.EnzymeEntryHelper. | 8 |
| Utility classes should not have a public or default constructor. | 27 |
| Line has trailing spaces. | 32 |
| Expected an @return tag. | 38 |
| Line is longer than 80 characters (found 112). | 38 |
| '(' is preceded with whitespace. | 38 |
| Parameter reference should be final. | 38 |
| Expected @param tag for 'reference'. | 38 |
| Parameter number should be final. | 38 |
| Expected @param tag for 'number'. | 38 |
| Parameter encoding should be final. | 38 |
| Expected @param tag for 'encoding'. | 38 |
| '(' is followed by whitespace. | 41 |
| ')' is preceded with whitespace. | 41 |
| '(' is followed by whitespace. | 44 |
| ')' is preceded with whitespace. | 44 |
| '(' is followed by whitespace. | 47 |
| ')' is preceded with whitespace. | 47 |
| Expected an @return tag. | 63 |
| Line is longer than 80 characters (found 101). | 63 |
| '(' is preceded with whitespace. | 63 |
| Parameter reference should be final. | 63 |
| Expected @param tag for 'reference'. | 63 |
| Parameter number should be final. | 63 |
| Expected @param tag for 'number'. | 63 |
| Parameter encoding should be final. | 63 |
| Expected @param tag for 'encoding'. | 63 |
| Line is longer than 80 characters (found 111). | 70 |
| Line is longer than 80 characters (found 95). | 72 |
| Line is longer than 80 characters (found 105). | 75 |
| Line is longer than 80 characters (found 109). | 79 |
| Line is longer than 80 characters (found 93). | 81 |
| Line is longer than 80 characters (found 138). | 83 |
| Missing a Javadoc comment. | 93 |
| '(' is preceded with whitespace. | 93 |
| Parameter book should be final. | 93 |
| Parameter encoding should be final. | 93 |
| Line is longer than 80 characters (found 111). | 107 |
| Line is longer than 80 characters (found 95). | 109 |
| Line is longer than 80 characters (found 105). | 112 |
| Line is longer than 80 characters (found 110). | 116 |
| Line is longer than 80 characters (found 94). | 118 |
| Line is longer than 80 characters (found 104). | 121 |
| Line is longer than 80 characters (found 113). | 128 |
| Line is longer than 80 characters (found 102). | 130 |
| Line is longer than 80 characters (found 107). | 133 |
| Line is longer than 80 characters (found 108). | 137 |
| Line is longer than 80 characters (found 97). | 139 |
| Line is longer than 80 characters (found 137). | 141 |
| Line is longer than 80 characters (found 83). | 152 |
| Missing a Javadoc comment. | 152 |
| '(' is preceded with whitespace. | 152 |
| Parameter journal should be final. | 152 |
| Parameter encoding should be final. | 152 |
| Missing a Javadoc comment. | 184 |
| '(' is preceded with whitespace. | 184 |
| Parameter patent should be final. | 184 |
| Parameter encoding should be final. | 184 |
| Violation | Message | Line |
|---|---|---|
| Class EnzymeSubSubclassHelper should be declared as final. | 13 |
| Line is longer than 80 characters (found 83). | 15 |
| Missing a Javadoc comment. | 17 |
| '{' is not followed by whitespace. | 17 |
| '}' is not preceded with whitespace. | 17 |
| Line has trailing spaces. | 18 |
| Line is longer than 80 characters (found 95). | 19 |
| Missing a Javadoc comment. | 19 |
| Parameter enzymeSubSubclass should be final. | 19 |
| Parameter encoding should be final. | 19 |
| Line is longer than 80 characters (found 98). | 33 |
| Line is longer than 80 characters (found 127). | 39 |
| Line is longer than 80 characters (found 105). | 45 |
| Line is longer than 80 characters (found 134). | 51 |
| Missing a Javadoc comment. | 115 |
| Parameter text should be final. | 115 |
| Violation | Message | Line |
|---|---|---|
| Class EnzymeSubclassHelper should be declared as final. | 13 |
| Line is longer than 80 characters (found 83). | 15 |
| Missing a Javadoc comment. | 17 |
| '{' is not followed by whitespace. | 17 |
| '}' is not preceded with whitespace. | 17 |
| Line is longer than 80 characters (found 89). | 19 |
| Missing a Javadoc comment. | 19 |
| Parameter enzymeSubclass should be final. | 19 |
| Parameter encoding should be final. | 19 |
| Line is longer than 80 characters (found 95). | 33 |
| Line is longer than 80 characters (found 124). | 39 |
| Line is longer than 80 characters (found 102). | 45 |
| Line is longer than 80 characters (found 131). | 51 |
| Missing a Javadoc comment. | 115 |
| Parameter text should be final. | 115 |
