compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

Dependency Tree

• uk.ac.ebi.intenz:intenz-biopax:jar:1.0.6

  BioPAX for IntEnz
  Description: BioPAX module for IntEnz URL: http://intenz.sf.net/intenz-biopax Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.intenz:intenz-core:jar:4.3.0 (compile)

    IntEnz core module
    Description: IntEnz - Core package URL: http://intenz.sf.net/intenz-core Project License: No license is defined for this project.

    • uk.ac.ebi.xchars:xchars:jar:1.2.6 (compile)

      XChars Java package
      Description: Java package for Special Characters handling. URL: http://intenz.sf.net/xchars/core Project License: No license is defined for this project.

    • uk.ac.ebi.xchars:xchars-config:jar:1.0.3 (compile)

      XChars configuration
      Description: Allows encoding/decoding of Special Characters. URL: http://intenz.sf.net/xchars/config Project License: No license is defined for this project.

    • commons-collections:commons-collections:jar:3.2 (compile)

      Collections
      Description: Types that extend and augment the Java Collections Framework. URL: http://jakarta.apache.org/commons/collections/ Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.biobabel:biobabel-core:jar:0.9.0 (compile)

      Core Utility Modules
      Description: The Biobabel Utility Core Modules. URL: http://intenz.sf.net/biobabel/biobabel-core Project License: No license is defined for this project.

  • uk.ac.ebi.rhea:rhea-biopax:jar:1.4.8 (compile)

    Biopax
    Description: Module to read/write BioPAX data in OWL format. URL: http://rhea-ebi.sf.net/rhea-biopax Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.rhea:rhea-domain:jar:1.8.0 (compile)

      Domain model
      Description: The domain model of Rhea. URL: http://rhea-ebi.sf.net/rhea-domain Project License: Creative Commons Attribution (CC BY) 3.0

      • uk.ac.ebi.xchars:xchars-taglib:jar:1.0.2 (compile)

        XChars tag library
        Description: Tag library to make special characters transformations from JSPs. URL: http://intenz.sf.net/xchars/taglib Project License: No license is defined for this project.

    • org.biopax.paxtools:paxtools-core:jar:4.2.0 (compile)

      paxtools-core
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • net.sourceforge.collections:collections-generic:jar:4.01 (compile)

        larvalabs collections
        Description: There is currently no description associated with this project. URL: http://collections.sourceforge.net Project License: Apache License V2.0

      • commons-logging:commons-logging:jar:1.1.1 (compile)

        Commons Logging
        Description: Commons Logging is a thin adapter allowing configurable bridging to other, well known logging systems. URL: http://commons.apache.org/logging Project License: The Apache Software License, Version 2.0

    • org.biopax.paxtools:paxtools-jena-io:jar:4.2.0 (compile)

      paxtools-jena-io
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • com.hp.hpl.jena:jena:jar:2.5.7 (compile)

        Jena
        Description: Jena is a Java framework for building Semantic Web applications. It provides a programmatic environment for RDF, RDFS and OWL, SPARQL and includes a rule-based inference engine. URL: http://jena.sourceforge.net/ Project License: BSD

        • com.hp.hpl.jena:arq:jar:2.6.0 (compile)

          ARQ
          Description: ARQ is a query engine for Jena that supports the SPARQL RDF Query language. SPARQL is the query language developed by the W3C RDF Data Access Working Group. URL: http://jena.sourceforge.net/ARQ/ Project License: BSD

          • stax:stax-api:jar:1.0 (compile)

            stax-api
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • woodstox:wstx-asl:jar:3.0.0 (compile)

            wstx-asl
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • com.hp.hpl.jena:json-jena:jar:1.0 (compile)

            json-jena
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • com.hp.hpl.jena:iri:jar:0.5 (compile)

          IRI
          Description: An implementation of RFC 3987 (IRI) and RFC 3986 (URI) URL: http://jena.sourceforge.net/ Project License: BSD

        • antlr:antlr:jar:2.7.5 (compile)

          antlr
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • com.hp.hpl.jena:concurrent-jena:jar:1.3.2 (compile)

          concurrent-jena
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • com.ibm.icu:icu4j:jar:3.4.4 (compile)

          ICU4J
          Description: The International Component for Unicode (ICU) is a mature, portable set of C/C++ and Java libraries for Unicode support, software internationalization (I18N) and globalization (G11N), giving applications the same results on all platforms. URL: http://www-306.ibm.com/software/globalization/icu/ Project License: ICU License

        • xerces:xercesImpl:jar:2.7.1 (compile)

          xercesImpl
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • xerces:xmlParserAPIs:jar:2.0.2 (compile)

          xmlParserAPIs
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    • uk.ac.ebi.biobabel:biobabel-db:jar:1.3.7 (compile)

      Database utilities
      Description: A module with database utilities. URL: http://intenz.sf.net/biobabel/biobabel-db Project License: No license is defined for this project.

      • org.antlr:antlr:jar:3.0.1 (compile)

        AntLR Parser Generator
        Description: A framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions. URL: http://antlr.org/ Project License: BSD licence

        • org.antlr:stringtemplate:jar:3.1-b1 (compile)

          StringTemplate Template Engine
          Description: StringTemplate is a java template engine (with ports for C# and Python) for generating source code, web pages, emails, or any other formatted text output. URL: http://www.stringtemplate.org Project License: BSD licence

  • uk.ac.ebi.intenz:intenz-mapper:jar:4.6.0 (test)

    IntEnz mapper module
    Description: IntEnz - Mapper package URL: http://intenz.sf.net/intenz-mapper Project License: The Apache Software License, Version 2.0

    • log4j:log4j:jar:1.2.17 (compile)

      Apache Log4j
      Description: Apache Log4j 1.2 URL: http://logging.apache.org/log4j/1.2/ Project License: The Apache Software License, Version 2.0

  • uk.ac.ebi.rhea:rhea-mapper:jar:3.8.2 (test)

    Mapper
    Description: Interfaces for mapping domain objects to a data source. Implementations for JDBC and web service are included. URL: http://rhea-ebi.sf.net/rhea-mapper Project License: The Apache Software License, Version 2.0

    • commons-lang:commons-lang:jar:2.6 (compile)

      Commons Lang
      Description: Commons Lang, a package of Java utility classes for the classes that are in java.lang's hierarchy, or are considered to be so standard as to justify existence in java.lang. URL: http://commons.apache.org/lang/ Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.biobabel:biobabel-citations:jar:2.0.1 (compile)

      Citations utilities
      Description: A module to handle citations from CiteXplore. URL: http://intenz.sf.net/biobabel/biobabel-citations Project License: No license is defined for this project.

      • com.sun.xml.ws:jaxws-tools:jar:2.1.4 (compile)

        JAX-WS (JSR-224) Reference Implementation Tools
        Description: Open source Reference Implementation of JSR-224: Java API for XML Web Services URL: https://jax-ws.dev.java.net// Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0GPLv2 with classpath exception

        • com.sun.xml.ws:jaxws-rt:jar:2.1.4 (compile)

          JAX-WS (JSR-224) Reference Implementation
          Description: Open source Reference Implementation of JSR-224: Java API for XML Web Services URL: https://jax-ws.dev.java.net// Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0GPLv2 with classpath exception

          • com.sun.xml.bind:jaxb-impl:jar:2.1.7 (compile)

            jaxb-impl
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • com.sun.xml.stream.buffer:streambuffer:jar:0.7 (compile)

            streambuffer
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • com.sun.xml.stream:sjsxp:jar:1.0.1 (compile)

            sjsxp
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • org.jvnet.staxex:stax-ex:jar:1.2 (compile)

            Extended StAX API
            Description: Extensions to JSR-173 StAX API. URL: https://stax-ex.dev.java.net/ Project License: Common Development And Distribution License (CDDL) Version 1.0

          • com.sun.org.apache.xml.internal:resolver:jar:20050927 (compile)

            resolver
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • org.jvnet:mimepull:jar:1.2 (compile)

            MIME streaming extension
            Description: Provides a streaming API to access attachments parts in a MIME message. Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0GPLv2 with classpath exception

        • com.sun.xml.bind:jaxb-xjc:jar:2.1.7 (compile)

          jaxb-xjc
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • javax.xml.bind:jaxb-api:jar:2.1 (compile)

        jaxb-api
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • javax.xml.stream:stax-api:jar:1.0-2 (compile)

          stax-api
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • javax.activation:activation:jar:1.1 (compile)

          activation
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • javax.xml.ws:jaxws-api:jar:2.1-1 (compile)

        JAX-WS API
        Description: JAX-WS API URL: https://jax-ws.dev.java.net/ Project License: COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0

        • javax.xml.soap:saaj-api:jar:1.3 (compile)

          saaj-api
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • javax.annotation:jsr250-api:jar:1.0 (compile)

          javax.annotation Package, from jax-ws
          Description: There is currently no description associated with this project. URL: https://jax-ws.dev.java.net/ Project License: No license is defined for this project.

        • javax.jws:jsr181:jar:1.0 (compile)

          Web Services Metadata for the Java Platform API
          Description: There is currently no description associated with this project. URL: http://dev2dev.bea.com/webservices/jwsm.html Project License: No license is defined for this project.

    • org.apache.lucene:lucene-core:jar:3.0.2 (test)

      Lucene Core
      Description: Apache Lucene Java Core URL: http://lucene.apache.org/java/lucene-core Project License: Apache 2

    • uk.ac.ebi.biobabel:biobabel-lucene:jar:1.0.6 (test)

      Lucene module
      Description: Biobabel utilities for Lucene. URL: http://intenz.sf.net/biobabel/biobabel-lucene Project License: No license is defined for this project.

    • uk.ac.ebi.chebi.utilities.structure.transformer:chebi-structure-transformer:jar:1.4.2 (test)

      ChEBI Structures Transformer
      Description: There is currently no description associated with this project. URL: /chebi-prg/chebi-utilities/chebi-structure/chebi-structure-transformer Project License: No license is defined for this project.

      • uk.ac.ebi.chebi.model:chebi-model:jar:1.7 (test)

        ChEBI Domain Model
        Description: ChEBI domain model URL: /chebi-prg/chebi-model Project License: No license is defined for this project.

      • chemaxon.marvin:MarvinBeans:jar:5.1.0 (test)

        MarvinBeans
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    • uk.ac.ebi.chebi.webapps.chebiWS.client:chebiWS-client:jar:2.0 (test)

      ChEBI Public Web Services Client
      Description: The public Web Services client mostly auto-generated from JAX-WS. Project License: No license is defined for this project.

      • com.sun.xml.messaging.saaj:saaj-impl:jar:1.3.2 (compile)

        saaj-impl
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • com.oracle:ojdbc5:jar:11.1.0.7.0 (test)

    ojdbc5
    Description: There is currently no description associated with this project. Project License: No license is defined for this project.

  • junit:junit:jar:4.10 (test)

    JUnit
    Description: JUnit is a regression testing framework written by Erich Gamma and Kent Beck. It is used by the developer who implements unit tests in Java. URL: http://junit.org Project License: Common Public License Version 1.0

    • org.hamcrest:hamcrest-core:jar:1.1 (test)

      Hamcrest Core
      Description: There is currently no description associated with this project. Project License: BSD style