| Violation | Message | Line |
|---|
 | Missing package-info.java file. | 0 |
| Missing a Javadoc comment. | 49 |
| Missing a Javadoc comment. | 51 |
| Line is longer than 80 characters (found 86). | 67 |
| Line is longer than 80 characters (found 84). | 68 |
| Method length is 158 lines (max allowed is 150). | 83 |
| Parameter enzymeEntry should be final. | 83 |
| 'enzymeEntry' hides a field. | 83 |
| Parameter model should be final. | 83 |
| '{' is not preceded with whitespace. | 83 |
| Line is longer than 80 characters (found 94). | 92 |
| Line is longer than 80 characters (found 90). | 95 |
| Line is longer than 80 characters (found 84). | 96 |
| '{' is not preceded with whitespace. | 97 |
| Line is longer than 80 characters (found 94). | 102 |
| Line is longer than 80 characters (found 90). | 104 |
| '{' is not preceded with whitespace. | 108 |
| Line is longer than 80 characters (found 81). | 110 |
| '{' is not preceded with whitespace. | 115 |
| '{' is not preceded with whitespace. | 116 |
| Line is longer than 80 characters (found 81). | 117 |
| Line is longer than 80 characters (found 92). | 119 |
| '{' is not preceded with whitespace. | 119 |
| Line is longer than 80 characters (found 83). | 120 |
| Line is longer than 80 characters (found 88). | 121 |
| Line is longer than 80 characters (found 94). | 122 |
| '{' is not preceded with whitespace. | 122 |
| Line is longer than 80 characters (found 83). | 123 |
| Line is longer than 80 characters (found 88). | 125 |
| '{' is not preceded with whitespace. | 125 |
| Line is longer than 80 characters (found 83). | 126 |
| Line is longer than 80 characters (found 91). | 128 |
| '{' is not preceded with whitespace. | 128 |
| Line is longer than 80 characters (found 106). | 129 |
| '+' is not preceded with whitespace. | 129 |
| '+' is not followed by whitespace. | 129 |
| '3' is a magic number. | 129 |
| Line is longer than 80 characters (found 83). | 130 |
| '{' is not preceded with whitespace. | 137 |
| '{' is not preceded with whitespace. | 141 |
| 'if' construct must use '{}'s. | 143 |
| '{' is not preceded with whitespace. | 144 |
| 'if' construct must use '{}'s. | 146 |
| '{' is not preceded with whitespace. | 148 |
| '{' is not preceded with whitespace. | 155 |
| '{' is not preceded with whitespace. | 159 |
| '{' is not preceded with whitespace. | 163 |
| Line is longer than 80 characters (found 86). | 165 |
| '{' is not preceded with whitespace. | 168 |
| Line is longer than 80 characters (found 84). | 170 |
| Line is longer than 80 characters (found 96). | 179 |
| Line is longer than 80 characters (found 81). | 183 |
| Line contains a tab character. | 183 |
| Line contains a tab character. | 184 |
| '{' is not preceded with whitespace. | 184 |
| Line contains a tab character. | 189 |
| Line is longer than 80 characters (found 82). | 190 |
| Line contains a tab character. | 190 |
| '+' is not followed by whitespace. | 190 |
| '{' is not preceded with whitespace. | 194 |
| '{' is not preceded with whitespace. | 195 |
| Line is longer than 80 characters (found 87). | 196 |
| Line is longer than 80 characters (found 81). | 197 |
| '{' is not preceded with whitespace. | 198 |
| Line is longer than 80 characters (found 92). | 199 |
| Line is longer than 80 characters (found 85). | 207 |
| Line is longer than 80 characters (found 82). | 208 |
| Line contains a tab character. | 208 |
| Line is longer than 80 characters (found 98). | 209 |
| switch without "default" clause. | 212 |
| '{' is not preceded with whitespace. | 212 |
| Line is longer than 80 characters (found 97). | 214 |
| Line is longer than 80 characters (found 97). | 217 |
| Line is longer than 80 characters (found 86). | 220 |
| Line contains a tab character. | 222 |
| Line contains a tab character. | 223 |
| Line contains a tab character. | 224 |
| '{' is not preceded with whitespace. | 231 |
| '{' is not preceded with whitespace. | 235 |
| Parameter cat should be final. | 246 |
| 'cat' hides a field. | 246 |
| Expected @param tag for 'cat'. | 246 |
| '{' is not preceded with whitespace. | 246 |
| Method 'getIntEnzEnzyme' is not designed for extension - needs to be abstract, final or empty. | 254 |
| '{' is not preceded with whitespace. | 254 |
| Method 'getBiopaxCatalysis' is not designed for extension - needs to be abstract, final or empty. | 261 |
| '{' is not preceded with whitespace. | 261 |
| Line is longer than 80 characters (found 82). | 265 |
| Missing a Javadoc comment. | 265 |
| Parameter enzymeEntry should be final. | 265 |
| Parameter reaction should be final. | 265 |
| '{' is not preceded with whitespace. | 265 |
| Line contains a tab character. | 266 |
| Missing a Javadoc comment. | 270 |
| Parameter cofactor should be final. | 270 |
| Line contains a tab character. | 271 |
| Parameter catId should be final. | 271 |
| Parameter model should be final. | 271 |
| '{' is not preceded with whitespace. | 271 |
| Line is longer than 80 characters (found 101). | 273 |
| Line contains a tab character. | 273 |
| Line is longer than 80 characters (found 120). | 274 |
| Line contains a tab character. | 274 |
| Line is longer than 80 characters (found 93). | 278 |
| '{' is not preceded with whitespace. | 279 |
| Line is longer than 80 characters (found 84). | 280 |
| Line is longer than 80 characters (found 88). | 282 |
| Line is longer than 80 characters (found 83). | 289 |
| Missing a Javadoc comment. | 289 |
| Parameter db should be final. | 289 |
| Parameter id should be final. | 289 |
| Parameter model should be final. | 289 |
| Parameter relationship should be final. | 289 |
| '{' is not preceded with whitespace. | 289 |
| '{' is not preceded with whitespace. | 292 |
| '?' is not preceded with whitespace. | 295 |
| '?' should be on a new line. | 295 |
| Avoid inline conditionals. | 295 |
| ':' is not preceded with whitespace. | 296 |
| ':' should be on a new line. | 296 |
| '{' is not preceded with whitespace. | 300 |
