Project Dependencies

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupIdArtifactIdVersionTypeLicense
commons-collectionscommons-collections3.2.1jarThe Apache Software License, Version 2.0
log4jlog4j1.2.17jarThe Apache Software License, Version 2.0
uk.ac.ebi.biobabelbiobabel-db1.3.7jar-
uk.ac.ebi.intenzintenz-core4.3.3jarThe Apache Software License, Version 2.0
uk.ac.ebi.rhearhea-domain1.8.0jarCreative Commons Attribution (CC BY) 3.0
uk.ac.ebi.rhearhea-mapper3.8.0jarThe Apache Software License, Version 2.0

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupIdArtifactIdVersionTypeLicense
junitjunit3.8.1jarCommon Public License Version 1.0

provided

The following is a list of provided dependencies for this project. These dependencies are required to compile the application, but should be provided by default when using the library:

GroupIdArtifactIdVersionTypeLicense
com.oracleojdbc511.1.0.7.0jar-

Project Transitive Dependencies

The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupIdArtifactIdVersionTypeLicense
antlrantlr2.7.7jarBSD License
chemaxon.marvinMarvinBeans5.1.0jar-
com.sun.org.apache.xml.internalresolver20050927jar-
com.sun.xml.bindjaxb-impl2.1.7jar-
com.sun.xml.bindjaxb-xjc2.1.7jar-
com.sun.xml.messaging.saajsaaj-impl1.3.2jar-
com.sun.xml.streamsjsxp1.0.1jar-
com.sun.xml.stream.bufferstreambuffer0.7jar-
com.sun.xml.wsjaxws-rt2.1.4jarCOMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0-GPLv2 with classpath exception
com.sun.xml.wsjaxws-tools2.1.4jarCOMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0-GPLv2 with classpath exception
commons-langcommons-lang2.6jarThe Apache Software License, Version 2.0
javax.activationactivation1.1jarCommon Development and Distribution License (CDDL) v1.0
javax.xml.bindjaxb-api2.1jar-
javax.xml.soapsaaj-api1.3jarCOMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0
javax.xml.streamstax-api1.0-2jarGNU General Public Library-COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0
javax.xml.wsjaxws-api2.1-1jar-
org.antlrantlr3.0.1jarBSD licence
org.antlrstringtemplate3.1-b1jarBSD licence
org.apache.lucenelucene-core3.0.2jarApache 2
org.jvnetmimepull1.2jarCOMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0-GPLv2 with classpath exception
org.jvnet.staxexstax-ex1.2jarCommon Development And Distribution License (CDDL) Version 1.0
uk.ac.ebi.biobabelbiobabel-citations2.0.1jar-
uk.ac.ebi.biobabelbiobabel-core0.13jar-
uk.ac.ebi.biobabelbiobabel-lucene1.0.6jar-
uk.ac.ebi.chebi.modelchebi-model1.7jar-
uk.ac.ebi.chebi.utilities.structure.transformerchebi-structure-transformer1.4.2jar-
uk.ac.ebi.chebi.webapps.chebiWS.clientchebiWS-client2.0jar-
uk.ac.ebi.xcharsxchars1.2.6jar-
uk.ac.ebi.xcharsxchars-config1.0.3jar-
uk.ac.ebi.xcharsxchars-taglib1.0.2jar-

Project Dependency Graph

Dependency Tree

  • uk.ac.ebi.intenz:intenz-mapper:jar:4.6.0 Information
    • uk.ac.ebi.intenz:intenz-core:jar:4.3.3 (compile) Information
      • uk.ac.ebi.xchars:xchars:jar:1.2.6 (compile) Information
      • uk.ac.ebi.xchars:xchars-config:jar:1.0.3 (compile) Information
      • uk.ac.ebi.biobabel:biobabel-core:jar:0.13 (compile) Information
    • uk.ac.ebi.rhea:rhea-mapper:jar:3.8.0 (compile) Information
      • commons-lang:commons-lang:jar:2.6 (compile) Information
      • uk.ac.ebi.biobabel:biobabel-citations:jar:2.0.1 (compile) Information
        • com.sun.xml.ws:jaxws-tools:jar:2.1.4 (compile) Information
          • com.sun.xml.ws:jaxws-rt:jar:2.1.4 (compile) Information
            • com.sun.xml.bind:jaxb-impl:jar:2.1.7 (compile) Information
            • com.sun.xml.stream.buffer:streambuffer:jar:0.7 (compile) Information
            • com.sun.xml.stream:sjsxp:jar:1.0.1 (compile) Information
            • org.jvnet.staxex:stax-ex:jar:1.2 (compile) Information
            • com.sun.org.apache.xml.internal:resolver:jar:20050927 (compile) Information
            • org.jvnet:mimepull:jar:1.2 (compile) Information
          • com.sun.xml.bind:jaxb-xjc:jar:2.1.7 (compile) Information
        • javax.xml.bind:jaxb-api:jar:2.1 (compile) Information
        • javax.xml.ws:jaxws-api:jar:2.1-1 (compile) Information
      • org.apache.lucene:lucene-core:jar:3.0.2 (compile) Information
      • uk.ac.ebi.biobabel:biobabel-lucene:jar:1.0.6 (compile) Information
      • uk.ac.ebi.chebi.utilities.structure.transformer:chebi-structure-transformer:jar:1.4.2 (compile) Information
        • uk.ac.ebi.chebi.model:chebi-model:jar:1.7 (compile) Information
        • chemaxon.marvin:MarvinBeans:jar:5.1.0 (compile) Information
      • uk.ac.ebi.chebi.webapps.chebiWS.client:chebiWS-client:jar:2.0 (compile) Information
    • uk.ac.ebi.rhea:rhea-domain:jar:1.8.0 (compile) Information
      • uk.ac.ebi.xchars:xchars-taglib:jar:1.0.2 (compile) Information
    • commons-collections:commons-collections:jar:3.2.1 (compile) Information
    • junit:junit:jar:3.8.1 (test) Information
    • com.oracle:ojdbc5:jar:11.1.0.7.0 (provided) Information
    • uk.ac.ebi.biobabel:biobabel-db:jar:1.3.7 (compile) Information
      • org.antlr:antlr:jar:3.0.1 (compile) Information
        • org.antlr:stringtemplate:jar:3.1-b1 (compile) Information
        • antlr:antlr:jar:2.7.7 (compile) Information
    • log4j:log4j:jar:1.2.17 (compile) Information

Licenses

Common Development And Distribution License (CDDL) Version 1.0: Extended StAX API

Apache 2: Lucene Core

Unknown: ChEBI Domain Model, ChEBI Public Web Services Client, ChEBI Structures Transformer, Citations utilities, Core Utility Modules, Database utilities, Lucene module, MarvinBeans, XChars Java package, XChars configuration, XChars tag library, jaxb-api, jaxb-impl, jaxb-xjc, jaxws-api, ojdbc5, resolver, saaj-impl, sjsxp, streambuffer

BSD License: AntLR Parser Generator

BSD licence: AntLR Parser Generator, StringTemplate Template Engine

GNU General Public Library: Streaming API for XML

Common Public License Version 1.0: JUnit

GPLv2 with classpath exception: JAX-WS (JSR-224) Reference Implementation, JAX-WS (JSR-224) Reference Implementation Tools, MIME streaming extension

COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0: JAX-WS (JSR-224) Reference Implementation, JAX-WS (JSR-224) Reference Implementation Tools, MIME streaming extension, SOAP with Attachments API Package, Streaming API for XML

The Apache Software License, Version 2.0: Apache Log4j, Commons Collections, Commons Lang, IntEnz core module, IntEnz mapper module, Mapper

Common Development and Distribution License (CDDL) v1.0: JavaBeans Activation Framework (JAF)

Creative Commons Attribution (CC BY) 3.0: Domain model

Dependency File Details

FilenameSizeEntriesClassesPackagesJDK RevDebugSealed
antlr-2.7.7.jar434.85 kB239224121.2debug-
MarvinBeans-5.1.0.jar9.18 MB3,9422,7941451.2release-
ojdbc5-11.1.0.7.0.jar1.80 MB788713291.5debugsealed
TotalSizeEntriesClassesPackagesJDK RevDebugSealed
311.41 MB4,9693,7311861.521
compile: 2compile: 9.61 MBcompile: 4,181compile: 3,018compile: 157-compile: 1-
provided: 1provided: 1.80 MBprovided: 788provided: 713provided: 29-provided: 1provided: 1

Dependency Repository Locations

Repo IDURLReleaseSnapshotBlacklisted
biobabel-repo${biobabel.maven.repo.url}YesYesYes
chebi-repohttp://www.ebi.ac.uk/~biobabel/maven2_repoYesYes-
apache.snapshotshttp://people.apache.org/repo/m2-snapshot-repository-Yes-
ebi-repohttp://www.ebi.ac.uk/~maven/m2repoYes--
java.nethttps://maven-repository.dev.java.net/nonav/repositoryYesYes-
jboss-thirdparty-releaseshttps://repository.jboss.org/nexus/content/repositories/thirdparty-releasesYesYes-
maven2-repository.dev.java.nethttp://download.java.net/maven/2/YesYes-
ibibliohttp://mirrors.ibiblio.org/pub/mirrors/maven2/YesYes-
centralhttp://repo.maven.apache.org/maven2Yes--
dev.java.net.2http://download.java.net/maven/2/YesYes-
ebi-repo-snapshotshttp://www.ebi.ac.uk/~maven/m2repo_snapshots-Yes-
maven-repohttp://repo1.maven.org/maven2YesYes-

Repository locations for each of the Dependencies.

Artifactchebi-repoapache.snapshotsebi-repofake.java.net.1jboss-thirdparty-releasesmaven2-repository.dev.java.netibibliocentralfake.dev.java.net.2ebi-repo-snapshotsmaven-repo
antlr:antlr:jar:2.7.7---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
chemaxon.marvin:MarvinBeans:jar:5.1.0Found at http://www.ebi.ac.uk/~biobabel/maven2_repo----------
com.oracle:ojdbc5:jar:11.1.0.7.0--Found at http://www.ebi.ac.uk/~maven/m2repo--------
com.sun.org.apache.xml.internal:resolver:jar:20050927---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://download.java.net/maven/2/Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
com.sun.xml.bind:jaxb-impl:jar:2.1.7---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
com.sun.xml.bind:jaxb-xjc:jar:2.1.7---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
com.sun.xml.messaging.saaj:saaj-impl:jar:1.3.2---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
com.sun.xml.stream:sjsxp:jar:1.0.1---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
com.sun.xml.stream.buffer:streambuffer:jar:0.7---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
com.sun.xml.ws:jaxws-rt:jar:2.1.4---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
com.sun.xml.ws:jaxws-tools:jar:2.1.4---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
commons-collections:commons-collections:jar:3.2.1---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
commons-lang:commons-lang:jar:2.6---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
javax.activation:activation:jar:1.1Found at http://www.ebi.ac.uk/~biobabel/maven2_repo--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
javax.xml.bind:jaxb-api:jar:2.1---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
javax.xml.soap:saaj-api:jar:1.3Found at http://www.ebi.ac.uk/~biobabel/maven2_repo--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://download.java.net/maven/2/Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
javax.xml.stream:stax-api:jar:1.0-2---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
javax.xml.ws:jaxws-api:jar:2.1-1--Found at http://www.ebi.ac.uk/~maven/m2repoFound at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
junit:junit:jar:3.8.1Found at http://www.ebi.ac.uk/~biobabel/maven2_repo--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://download.java.net/maven/2/Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
log4j:log4j:jar:1.2.17---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
org.antlr:antlr:jar:3.0.1---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
org.antlr:stringtemplate:jar:3.1-b1---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
org.apache.lucene:lucene-core:jar:3.0.2---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
org.jvnet:mimepull:jar:1.2---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at https://repository.jboss.org/nexus/content/repositories/thirdparty-releasesFound at http://download.java.net/maven/2/Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
org.jvnet.staxex:stax-ex:jar:1.2---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://download.java.net/maven/2/Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2
uk.ac.ebi.biobabel:biobabel-citations:jar:2.0.1--Found at http://www.ebi.ac.uk/~maven/m2repo--------
uk.ac.ebi.biobabel:biobabel-core:jar:0.13--Found at http://www.ebi.ac.uk/~maven/m2repo--------
uk.ac.ebi.biobabel:biobabel-db:jar:1.3.7--Found at http://www.ebi.ac.uk/~maven/m2repo--------
uk.ac.ebi.biobabel:biobabel-lucene:jar:1.0.6--Found at http://www.ebi.ac.uk/~maven/m2repo--------
uk.ac.ebi.chebi.model:chebi-model:jar:1.7Found at http://www.ebi.ac.uk/~biobabel/maven2_repo----------
uk.ac.ebi.chebi.utilities.structure.transformer:chebi-structure-transformer:jar:1.4.2Found at http://www.ebi.ac.uk/~biobabel/maven2_repo----------
uk.ac.ebi.chebi.webapps.chebiWS.client:chebiWS-client:jar:2.0--Found at http://www.ebi.ac.uk/~maven/m2repo--------
uk.ac.ebi.intenz:intenz-core:jar:4.3.3--Found at http://www.ebi.ac.uk/~maven/m2repo--------
uk.ac.ebi.rhea:rhea-domain:jar:1.8.0--Found at http://www.ebi.ac.uk/~maven/m2repo--------
uk.ac.ebi.rhea:rhea-mapper:jar:3.8.0--Found at http://www.ebi.ac.uk/~maven/m2repo--------
uk.ac.ebi.xchars:xchars:jar:1.2.6--Found at http://www.ebi.ac.uk/~maven/m2repo--------
uk.ac.ebi.xchars:xchars-config:jar:1.0.3Found at http://www.ebi.ac.uk/~biobabel/maven2_repo-Found at http://www.ebi.ac.uk/~maven/m2repo--------
uk.ac.ebi.xchars:xchars-taglib:jar:1.0.2Found at http://www.ebi.ac.uk/~biobabel/maven2_repo-Found at http://www.ebi.ac.uk/~maven/m2repo--------
Totalchebi-repoapache.snapshotsebi-repofake.java.net.1jboss-thirdparty-releasesmaven2-repository.dev.java.netibibliocentralfake.dev.java.net.2ebi-repo-snapshotsmaven-repo
38 (compile: 36, test: 1, provided: 1)80132315232323023