IntEnz flat file writer module
The IntEnz flat file writer module dumps enzyme data in SIB's
The dump is done every night. The resulting file is downloaded by
SIB, and at some point they release a new version of the flat file
in both SIB's and EBI's ftp servers.
DE line modifications
EC numbers which have been transferred to more than one target EC
number or whose target has been transferred later on, pose a
problem as the DE line of the flat file is generated by default
using the information in the HISTORY_EVENTS table, that is only
one target, and only the next (not the final one).
Other EC numbers are deleted by NC-IUBMB, but SIB prefers to
consider them as transferred to existing EC numbers. Their DE line
should read "Transferred to..." instead of "Deleted entry".
So we need to translate these DE lines. To that end, we use the file
, which lists
the EC numbers whose DE line should be changed because of the above
reasons, mapped to the new (modified) DE line.
Once a line is added/modified in the file, in order to make it
effective you have to deploy a new version of this module to the
maven repository, as the overnight cron job takes automatically the
latest release (final version, not SNAPSHOT).
Other formatting exceptions
Other exceptions must be done to get the right format. For example,
the characters 'sp.' don't mean the end of a sentence. This concrete
case is defined in CC_LineFormatter.java, in the
For other cases, like capitalisation exceptions at the beginning of a
sentence, it may be necessary to make changes to the