Project Dependencies

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupIdArtifactIdVersionTypeLicense
commons-clicommons-cli1.2jarThe Apache Software License, Version 2.0
javax.mailmail1.4.3jarCDDL-GPLv2+CE
log4jlog4j1.2.17jarThe Apache Software License, Version 2.0
org.apache.velocityvelocity1.7jarThe Apache Software License, Version 2.0
org.glassfishjavax.json1.0.2jarDual license consisting of the CDDL v1.1 and GPL v2
org.sitemapssitemaps0.9jar-
uk.ac.ebi.biobabelbiobabel-core0.18jar-
uk.ac.ebi.biobabelbiobabel-db1.3.7jar-
uk.ac.ebi.intenzintenz-biopax1.0.6jarThe Apache Software License, Version 2.0
uk.ac.ebi.intenzintenz-core4.3.3jarThe Apache Software License, Version 2.0
uk.ac.ebi.intenzintenz-database1.1.5jarThe Apache Software License, Version 2.0
uk.ac.ebi.intenzintenz-mapper4.6.0jarThe Apache Software License, Version 2.0
uk.ac.ebi.intenzintenz-translator1.0.12jarThe Apache Software License, Version 2.0
uk.ac.ebi.intenzintenz-xml1.1.2jar-
uk.ac.ebi.rhearhea-cml1.0.3jarThe Apache Software License, Version 2.0
uk.ac.ebi.rhearhea-domain1.8.1jarCreative Commons Attribution (CC BY) 3.0
uk.ac.ebi.rhearhea-mapper3.8.2jarThe Apache Software License, Version 2.0
xercesxercesImpl2.9.1jarThe Apache Software License, Version 2.0

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupIdArtifactIdVersionTypeLicense
com.oracleojdbc511.1.0.7.0jar-
junitjunit4.8.2jarCommon Public License Version 1.0

Project Transitive Dependencies

The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupIdArtifactIdVersionTypeLicense
antlrantlr2.7.7jarBSD License
chemaxon.marvinMarvinBeans5.1.0jar-
com.hp.hpl.jenaarq2.6.0jarBSD
com.hp.hpl.jenaconcurrent-jena1.3.2jar-
com.hp.hpl.jenairi0.5jarBSD
com.hp.hpl.jenajena2.5.7jarBSD
com.hp.hpl.jenajson-jena1.0jar-
com.ibm.icuicu4j3.4.4jarICU License
com.sun.org.apache.xml.internalresolver20050927jar-
com.sun.xml.bindjaxb-impl2.1.7jar-
com.sun.xml.bindjaxb-xjc2.1.7jar-
com.sun.xml.messaging.saajsaaj-impl1.3.2jar-
com.sun.xml.streamsjsxp1.0.1jar-
com.sun.xml.stream.bufferstreambuffer0.7jar-
com.sun.xml.wsjaxws-rt2.1.4jarCOMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0-GPLv2 with classpath exception
com.sun.xml.wsjaxws-tools2.1.4jarCOMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0-GPLv2 with classpath exception
commons-collectionscommons-collections3.2.1jarThe Apache Software License, Version 2.0
commons-langcommons-lang2.5jarThe Apache Software License, Version 2.0
commons-loggingcommons-logging1.1.1jarThe Apache Software License, Version 2.0
commons-poolcommons-pool1.6jarThe Apache Software License, Version 2.0
javax.activationactivation1.1jarCommon Development and Distribution License (CDDL) v1.0
javax.xml.bindjaxb-api2.1jar-
javax.xml.soapsaaj-api1.3jarCOMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0
javax.xml.streamstax-api1.0-2jarGNU General Public Library-COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0
javax.xml.wsjaxws-api2.1-1jar-
net.sourceforge.collectionscollections-generic4.01jarApache License V2.0
org.antlrantlr3.0.1jarBSD licence
org.antlrstringtemplate3.1-b1jarBSD licence
org.apache.lucenelucene-core3.0.2jarApache 2
org.biopax.paxtoolspaxtools-core4.2.0jar-
org.biopax.paxtoolspaxtools-jena-io4.2.0jar-
org.cmlcml-react2.0jar-
org.jvnetmimepull1.2jarCOMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0-GPLv2 with classpath exception
org.jvnet.staxexstax-ex1.2jarCommon Development And Distribution License (CDDL) Version 1.0
staxstax-api1.0jar-
uk.ac.ebi.biobabelbiobabel-citations2.0.1jar-
uk.ac.ebi.biobabelbiobabel-lucene1.0.6jar-
uk.ac.ebi.chebi.modelchebi-model1.7jar-
uk.ac.ebi.chebi.utilities.structure.transformerchebi-structure-transformer1.4.2jar-
uk.ac.ebi.chebi.webapps.chebiWS.clientchebiWS-client2.0jar-
uk.ac.ebi.rhearhea-biopax1.4.8jarThe Apache Software License, Version 2.0
uk.ac.ebi.xcharsxchars1.2.6jar-
uk.ac.ebi.xcharsxchars-config1.0.3jar-
uk.ac.ebi.xcharsxchars-taglib1.0.2jar-
woodstoxwstx-asl3.0.0jar-
xercesxmlParserAPIs2.0.2jar-
xml-apisxml-apis1.3.04jarThe Apache Software License, Version 2.0

Project Dependency Graph

Dependency Tree

  • uk.ac.ebi.intenz:intenz-export:jar:1.4.1 Information
    • uk.ac.ebi.intenz:intenz-core:jar:4.3.3 (compile) Information
    • uk.ac.ebi.intenz:intenz-mapper:jar:4.6.0 (compile) Information
    • uk.ac.ebi.intenz:intenz-translator:jar:1.0.12 (compile) Information
    • uk.ac.ebi.intenz:intenz-biopax:jar:1.0.6 (compile) Information
      • uk.ac.ebi.rhea:rhea-biopax:jar:1.4.8 (compile) Information
        • org.biopax.paxtools:paxtools-core:jar:4.2.0 (compile) Information
        • org.biopax.paxtools:paxtools-jena-io:jar:4.2.0 (compile) Information
          • com.hp.hpl.jena:jena:jar:2.5.7 (compile) Information
            • com.hp.hpl.jena:arq:jar:2.6.0 (compile) Information
              • stax:stax-api:jar:1.0 (compile) Information
              • woodstox:wstx-asl:jar:3.0.0 (compile) Information
              • com.hp.hpl.jena:json-jena:jar:1.0 (compile) Information
            • com.hp.hpl.jena:iri:jar:0.5 (compile) Information
            • com.hp.hpl.jena:concurrent-jena:jar:1.3.2 (compile) Information
            • com.ibm.icu:icu4j:jar:3.4.4 (compile) Information
            • xerces:xmlParserAPIs:jar:2.0.2 (compile) Information
    • uk.ac.ebi.intenz:intenz-xml:jar:1.1.2 (compile) Information
      • org.cml:cml-react:jar:2.0 (compile) Information
    • uk.ac.ebi.intenz:intenz-database:jar:1.1.5 (compile) Information
    • uk.ac.ebi.rhea:rhea-domain:jar:1.8.1 (compile) Information
      • uk.ac.ebi.xchars:xchars-taglib:jar:1.0.2 (compile) Information
      • uk.ac.ebi.biobabel:biobabel-citations:jar:2.0.1 (compile) Information
        • com.sun.xml.ws:jaxws-tools:jar:2.1.4 (compile) Information
          • com.sun.xml.ws:jaxws-rt:jar:2.1.4 (compile) Information
            • com.sun.xml.bind:jaxb-impl:jar:2.1.7 (compile) Information
            • com.sun.xml.stream.buffer:streambuffer:jar:0.7 (compile) Information
            • com.sun.xml.stream:sjsxp:jar:1.0.1 (compile) Information
            • org.jvnet.staxex:stax-ex:jar:1.2 (compile) Information
            • com.sun.org.apache.xml.internal:resolver:jar:20050927 (compile) Information
            • org.jvnet:mimepull:jar:1.2 (compile) Information
          • com.sun.xml.bind:jaxb-xjc:jar:2.1.7 (compile) Information
        • javax.xml.ws:jaxws-api:jar:2.1-1 (compile) Information
      • commons-lang:commons-lang:jar:2.5 (compile) Information
    • uk.ac.ebi.rhea:rhea-mapper:jar:3.8.2 (compile) Information
      • org.apache.lucene:lucene-core:jar:3.0.2 (compile) Information
      • uk.ac.ebi.biobabel:biobabel-lucene:jar:1.0.6 (compile) Information
      • uk.ac.ebi.chebi.utilities.structure.transformer:chebi-structure-transformer:jar:1.4.2 (compile) Information
        • uk.ac.ebi.chebi.model:chebi-model:jar:1.7 (compile) Information
        • chemaxon.marvin:MarvinBeans:jar:5.1.0 (compile) Information
      • uk.ac.ebi.chebi.webapps.chebiWS.client:chebiWS-client:jar:2.0 (compile) Information
    • uk.ac.ebi.rhea:rhea-cml:jar:1.0.3 (compile) Information
    • uk.ac.ebi.biobabel:biobabel-core:jar:0.18 (compile) Information
    • uk.ac.ebi.biobabel:biobabel-db:jar:1.3.7 (compile) Information
      • org.antlr:antlr:jar:3.0.1 (compile) Information
        • org.antlr:stringtemplate:jar:3.1-b1 (compile) Information
        • antlr:antlr:jar:2.7.7 (compile) Information
    • commons-cli:commons-cli:jar:1.2 (compile) Information
    • org.apache.velocity:velocity:jar:1.7 (compile) Information
    • log4j:log4j:jar:1.2.17 (compile) Information
    • xerces:xercesImpl:jar:2.9.1 (compile) Information
      • xml-apis:xml-apis:jar:1.3.04 (compile) Information
    • javax.mail:mail:jar:1.4.3 (compile) Information
      • javax.activation:activation:jar:1.1 (compile) Information
    • org.sitemaps:sitemaps:jar:0.9 (compile) Information
      • javax.xml.bind:jaxb-api:jar:2.1 (compile) Information
    • org.glassfish:javax.json:jar:1.0.2 (compile) Information
    • junit:junit:jar:4.8.2 (test) Information
    • com.oracle:ojdbc5:jar:11.1.0.7.0 (test) Information

Licenses

ICU License: ICU4J

GPLv2+CE: JavaMail API

Apache 2: Lucene Core

Unknown: CML-React, ChEBI Domain Model, ChEBI Public Web Services Client, ChEBI Structures Transformer, Citations utilities, Core Utility Modules, Database utilities, IntEnzXML, Lucene module, MarvinBeans, XChars Java package, XChars configuration, XChars tag library, concurrent-jena, jaxb-api, jaxb-impl, jaxb-xjc, jaxws-api, json-jena, ojdbc5, paxtools-core, paxtools-jena-io, resolver, saaj-impl, sitemaps, sjsxp, stax-api, streambuffer, wstx-asl, xmlParserAPIs

BSD: ARQ, IRI, Jena

BSD licence: AntLR Parser Generator, StringTemplate Template Engine

COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0: JAX-WS (JSR-224) Reference Implementation, JAX-WS (JSR-224) Reference Implementation Tools, MIME streaming extension, SOAP with Attachments API Package, Streaming API for XML

GPLv2 with classpath exception: JAX-WS (JSR-224) Reference Implementation, JAX-WS (JSR-224) Reference Implementation Tools, MIME streaming extension

Dual license consisting of the CDDL v1.1 and GPL v2: JSR 353 (JSON Processing) Default Provider

The Apache Software License, Version 2.0: Apache Log4j, Apache Velocity, BioPAX for IntEnz, Biopax, Commons CLI, Commons Collections, Commons Lang, Commons Logging, Commons Pool, IntEnz core module, IntEnz database, IntEnz export module, IntEnz mapper module, IntEnz translator, Mapper, Rhea CML, XML Commons External Components XML APIs, Xerces2 Java Parser

CDDL: JavaMail API

Common Development And Distribution License (CDDL) Version 1.0: Extended StAX API

Apache License V2.0: larvalabs collections

BSD License: AntLR Parser Generator

GNU General Public Library: Streaming API for XML

Common Public License Version 1.0: JUnit

Common Development and Distribution License (CDDL) v1.0: JavaBeans Activation Framework (JAF)

Creative Commons Attribution (CC BY) 3.0: Domain model

Dependency File Details

FilenameSizeEntriesClassesPackagesJDK RevDebugSealed
antlr-2.7.7.jar434.85 kB239224121.2debug-
MarvinBeans-5.1.0.jar9.18 MB3,9422,7941451.2release-
arq-2.6.0.jar1.25 MB1,041981531.4debug-
concurrent-jena-1.3.2.jar123.51 kB15114311.2release-
iri-0.5.jar147.42 kB817231.4debug-
jena-2.5.7.jar2.12 MB1,7121,571561.4debug-
json-jena-1.0.jar33.83 kB191511.2debug-
icu4j-3.4.4.jar3.08 MB1,07352561.3debug-
ojdbc5-11.1.0.7.0.jar1.80 MB788713291.5debugsealed
TotalSizeEntriesClassesPackagesJDK RevDebugSealed
918.17 MB9,0467,0383061.571
compile: 8compile: 16.36 MBcompile: 8,258compile: 6,325compile: 277-compile: 6-
test: 1test: 1.80 MBtest: 788test: 713test: 29-test: 1test: 1

Dependency Repository Locations

Repo IDURLReleaseSnapshot
biobabel-repohttp://www.ebi.ac.uk/~biobabel/maven2_repoYesYes
paxtools-snapshotshttp://biopax.sourceforge.net/m2repo/snapshots/-Yes
chebi-repohttp://www.ebi.ac.uk/~biobabel/maven2_repoYesYes
apache.snapshotshttp://people.apache.org/repo/m2-snapshot-repository-Yes
ebi-repohttp://www.ebi.ac.uk/~maven/m2repoYes-
java.nethttps://maven-repository.dev.java.net/nonav/repositoryYesYes
jboss-thirdparty-releaseshttps://repository.jboss.org/nexus/content/repositories/thirdparty-releasesYesYes
maven2-repository.dev.java.nethttp://download.java.net/maven/2/YesYes
paxtoolshttp://biopax.sourceforge.net/m2repo/releases/Yes-
ibibliohttp://mirrors.ibiblio.org/pub/mirrors/maven2/YesYes
centralhttp://repo.maven.apache.org/maven2Yes-
dev.java.net.2http://download.java.net/maven/2/YesYes
ebi-repo-snapshotshttp://www.ebi.ac.uk/~maven/m2repo_snapshots-Yes
maven-repohttp://repo1.maven.org/maven2YesYes
jvnet-nexus-snapshotshttps://maven.java.net/content/repositories/snapshots-Yes

Repository locations for each of the Dependencies.

Artifactbiobabel-repopaxtools-snapshotschebi-repoapache.snapshotsebi-repofake.java.net.1jboss-thirdparty-releasesmaven2-repository.dev.java.netpaxtoolsibibliocentralfake.dev.java.net.2ebi-repo-snapshotsmaven-repojvnet-nexus-snapshots
antlr:antlr:jar:2.7.7-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
chemaxon.marvin:MarvinBeans:jar:5.1.0Found at http://www.ebi.ac.uk/~biobabel/maven2_repo-Found at http://www.ebi.ac.uk/~biobabel/maven2_repo------------
com.hp.hpl.jena:arq:jar:2.6.0-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
com.hp.hpl.jena:concurrent-jena:jar:1.3.2-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
com.hp.hpl.jena:iri:jar:0.5-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
com.hp.hpl.jena:jena:jar:2.5.7-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
com.hp.hpl.jena:json-jena:jar:1.0-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
com.ibm.icu:icu4j:jar:3.4.4-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
com.oracle:ojdbc5:jar:11.1.0.7.0----Found at http://www.ebi.ac.uk/~maven/m2repo----------
com.sun.org.apache.xml.internal:resolver:jar:20050927-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://download.java.net/maven/2/-Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
com.sun.xml.bind:jaxb-impl:jar:2.1.7-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
com.sun.xml.bind:jaxb-xjc:jar:2.1.7-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
com.sun.xml.messaging.saaj:saaj-impl:jar:1.3.2-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
com.sun.xml.stream:sjsxp:jar:1.0.1-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
com.sun.xml.stream.buffer:streambuffer:jar:0.7-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
com.sun.xml.ws:jaxws-rt:jar:2.1.4-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
com.sun.xml.ws:jaxws-tools:jar:2.1.4-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
commons-cli:commons-cli:jar:1.2-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
commons-collections:commons-collections:jar:3.2.1-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
commons-lang:commons-lang:jar:2.5-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
commons-logging:commons-logging:jar:1.1.1-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
commons-pool:commons-pool:jar:1.6-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
javax.activation:activation:jar:1.1Found at http://www.ebi.ac.uk/~biobabel/maven2_repo-Found at http://www.ebi.ac.uk/~biobabel/maven2_repo--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
javax.mail:mail:jar:1.4.3-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://download.java.net/maven/2/-Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
javax.xml.bind:jaxb-api:jar:2.1-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
javax.xml.soap:saaj-api:jar:1.3Found at http://www.ebi.ac.uk/~biobabel/maven2_repo-Found at http://www.ebi.ac.uk/~biobabel/maven2_repo--Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://download.java.net/maven/2/-Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
javax.xml.stream:stax-api:jar:1.0-2-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
javax.xml.ws:jaxws-api:jar:2.1-1----Found at http://www.ebi.ac.uk/~maven/m2repoFound at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
junit:junit:jar:4.8.2-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
log4j:log4j:jar:1.2.17-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
net.sourceforge.collections:collections-generic:jar:4.01-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
org.antlr:antlr:jar:3.0.1-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
org.antlr:stringtemplate:jar:3.1-b1-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
org.apache.lucene:lucene-core:jar:3.0.2-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
org.apache.velocity:velocity:jar:1.7-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
org.biopax.paxtools:paxtools-core:jar:4.2.0--------Found at http://biopax.sourceforge.net/m2repo/releases/------
org.biopax.paxtools:paxtools-jena-io:jar:4.2.0--------Found at http://biopax.sourceforge.net/m2repo/releases/------
org.cml:cml-react:jar:2.0Found at http://www.ebi.ac.uk/~biobabel/maven2_repo-Found at http://www.ebi.ac.uk/~biobabel/maven2_repo------------
org.glassfish:javax.json:jar:1.0.2-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
org.jvnet:mimepull:jar:1.2-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at https://repository.jboss.org/nexus/content/repositories/thirdparty-releasesFound at http://download.java.net/maven/2/-Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
org.jvnet.staxex:stax-ex:jar:1.2-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://download.java.net/maven/2/-Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
org.sitemaps:sitemaps:jar:0.9Found at http://www.ebi.ac.uk/~biobabel/maven2_repo-Found at http://www.ebi.ac.uk/~biobabel/maven2_repo------------
stax:stax-api:jar:1.0-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
uk.ac.ebi.biobabel:biobabel-citations:jar:2.0.1----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.biobabel:biobabel-core:jar:0.18----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.biobabel:biobabel-db:jar:1.3.7----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.biobabel:biobabel-lucene:jar:1.0.6----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.chebi.model:chebi-model:jar:1.7Found at http://www.ebi.ac.uk/~biobabel/maven2_repo-Found at http://www.ebi.ac.uk/~biobabel/maven2_repo------------
uk.ac.ebi.chebi.utilities.structure.transformer:chebi-structure-transformer:jar:1.4.2Found at http://www.ebi.ac.uk/~biobabel/maven2_repo-Found at http://www.ebi.ac.uk/~biobabel/maven2_repo------------
uk.ac.ebi.chebi.webapps.chebiWS.client:chebiWS-client:jar:2.0----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.intenz:intenz-biopax:jar:1.0.6----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.intenz:intenz-core:jar:4.3.3----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.intenz:intenz-database:jar:1.1.5----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.intenz:intenz-mapper:jar:4.6.0----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.intenz:intenz-translator:jar:1.0.12----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.intenz:intenz-xml:jar:1.1.2----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.rhea:rhea-biopax:jar:1.4.8----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.rhea:rhea-cml:jar:1.0.3----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.rhea:rhea-domain:jar:1.8.1----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.rhea:rhea-mapper:jar:3.8.2----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.xchars:xchars:jar:1.2.6----Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.xchars:xchars-config:jar:1.0.3Found at http://www.ebi.ac.uk/~biobabel/maven2_repo-Found at http://www.ebi.ac.uk/~biobabel/maven2_repo-Found at http://www.ebi.ac.uk/~maven/m2repo----------
uk.ac.ebi.xchars:xchars-taglib:jar:1.0.2Found at http://www.ebi.ac.uk/~biobabel/maven2_repo-Found at http://www.ebi.ac.uk/~biobabel/maven2_repo-Found at http://www.ebi.ac.uk/~maven/m2repo----------
woodstox:wstx-asl:jar:3.0.0-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
xerces:xercesImpl:jar:2.9.1-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
xerces:xmlParserAPIs:jar:2.0.2-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
xml-apis:xml-apis:jar:1.3.04-----Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/---Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/Found at http://repo.maven.apache.org/maven2Found at http://mirrors.ibiblio.org/pub/mirrors/maven2/-Found at http://repo1.maven.org/maven2-
Totalbiobabel-repopaxtools-snapshotschebi-repoapache.snapshotsebi-repofake.java.net.1jboss-thirdparty-releasesmaven2-repository.dev.java.netpaxtoolsibibliocentralfake.dev.java.net.2ebi-repo-snapshotsmaven-repojvnet-nexus-snapshots
67 (compile: 65, test: 2)909020411524141410410